BAC Information

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BAC

Clone NameB6Ng01-053A24
Chromosome14 (Build37)
Map Location 84,331,546 - 84,469,419
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053A24.bB6Ng01-053A24.g
ACCDH876223DH876224
length1,0491,126
definitionDH876223|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A24, 5' end.DH876224|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,468,367 - 84,469,419)(84,331,546 - 84,332,666)
sequence
gaattctccttaaggtaataaaactgctcaacattttgcttagaacatta
cagttttgttctttaaacccaatcataaaaatagtatttaatggctgtag
agatatcaagagtctataaataagaccttgctcaatctatctaggtatcc
cactgcaagcttctgtcttaggatgttgcttactcgctttagtagtgctc
tcttacattttttttaatgtgtccacaataaattcacagtaatatttgaa
tactttgggtatttgcatattaaggattgaattattcattttaaagttgt
taattttatgctctatgaattatatctcactaaccaaattaagggacaat
atagcagagtctctcatagagtacagtaaatttcacctttattaatatct
tatatctgcacagtatatttttcaaattaatgagaaaatattgaatatga
aaattactagtacttatctatacctttttctttaagtaattatctttact
cctaatattctatgttattttgaaaagttttatcgatgttgagttattgt
taactttaaaatatattttgacacttttttttagatattttcttcattta
catttcaaatctatccctaaagtcccccattcccctcccgcccccactcc
cctacccacccactccccctgcttggccctggcgtccccttgtactgggg
cagatgaagtttgcacaactttaagttttgataacctgcagtgcttttta
catatatttgtcacatactttagactgtccctttttgatatgttttatca
tggttaagctgcagtaatgtgtttttaaaagtggattacacaggcaaaga
aacttgaatgaaacttcttcatggaagatagacactaacagaacagtata
aggttctcagtcactgactttttttttttttctggttctgttagagtaat
agggcaagagttcattctcttggatagatctaacggctatcatgaagctg
tcaatcaacaggttcatggtcatacagtggtaccctaatgctccatggg
gaattctgcactcatgcactgccagtggtacccagctgcattgttcttcc
aactgaaggactgaagaccagtgaacacccatgatttctccaggccatgg
gaggcagatgaggactgctctgtaagatgcagaaaattgcatctaatgta
gaaaattggaacaggggcatgagtggtcataggaactaaatttgaccttg
gattccttaccctttgggaactgaattatgggccaaatttagaaatcttt
ggagagatgcactgaaagagcctatgattctataagtacaacttaatggg
tgatctagtgagatctcagaaaacaatgccaacagtgacggctgcagact
ttctcagcaattaaagttgaagtccttttacatctcatcctccagaggga
tttttttctccttttgatctatacctggaggtttcaaatgagtttgagat
taaaaaaaaaaatgactgaatgattaattttgatcttccctccacctgtc
acatccatgtcctaactgtaaactgtgccacaatgttcataggcacctct
gcctaaatcataagatgtacaaggaacataatataggactaaggctcaga
cattttcccaattatattgaaagaaaaacctgggaaaaggggtcaggagt
gtgtatctttttgagccaaagaagtaagtggatttcttttccaaagtaaa
taacaaaaatgctggactctgtatcatcatatattacaattatcaaaaat
tgtgaaactgttagtaaactgatatatcttgttatatttaatatcacatg
ctaacaatctattaaacaaacttgttttaattatatttaacaaagcaaac
aaacaaacaaacaactaaatgcagaaaatctggagctaaatgatgctgta
aaccaaatgaacccaaaagaatatttcacccaaatacagaatatatcttc
atcattgacacttctaaagattgtgaaacctgggataatggatttgataa
atgaagcaaactcataagaaacttacttgttttcttgggagtttttaaca
gaagaacttgcatttctccctcacatgatgccatttctgggaccaaattc
tgggcatttcctgtagtggaaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84468367_84469419
seq2: B6Ng01-053A24.b_46_1094 (reverse)

seq1  CCCACTGGAGCAATAGTGGTACAACTGTTATGACATTGAA-CTGTTGATG  49
      |||| ||||||| ||| ||||| |||| ||||||  |||| |||||||| 
seq2  CCCA-TGGAGCATTAG-GGTACCACTG-TATGACCATGAACCTGTTGATT  47

seq1  AACAGCTTCATGATAGCAGTTAGAATCTATCCAAGAGAATGAACTCTTG-  98
       |||||||||||||||| ||||| ||||||||||||||||||||||||| 
seq2  GACAGCTTCATGATAGCCGTTAG-ATCTATCCAAGAGAATGAACTCTTGC  96

seq1  CCTATTACTCTTAACAGAACCAGAAAAAAAAAAAAAGTCAGTGACTGAGA  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTATTACTC-TAACAGAACCAGAAAAAAAAAAAAAGTCAGTGACTGAGA  145

seq1  ACCTAATACTGTTCTGTTAGTGTCTAATCTTCCATGAAGAAGTTTCATTC  198
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCTTATACTGTTCTGTTAGTGTCT-ATCTTCCATGAAGAAGTTTCATTC  194

seq1  AAGTTTCTTTGCCTGTGTAATCCACTTTTAAAAACACATTACTGCAGCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTTGCCTGTGTAATCCACTTTTAAAAACACATTACTGCAGCTT  244

seq1  AACCATGATAAAACATATCAAAAAGGGACAGTCTAAAGTATGTGACAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGATAAAACATATCAAAAAGGGACAGTCTAAAGTATGTGACAAAT  294

seq1  ATATGTAAAAAGCACTGCAGGTTATCAAAACTTAAAGTTGTGCAAACTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAAAAGCACTGCAGGTTATCAAAACTTAAAGTTGTGCAAACTTC  344

seq1  ATCTGCCCCAGTACAAGGGGACGCCAGGGCCAAGCAGGGGGAGTGGGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCCAGTACAAGGGGACGCCAGGGCCAAGCAGGGGGAGTGGGTGG  394

seq1  GTAGGGGAGTGGGGGCGGGAGGGGAATGGGGGACTTTAGGGATAGATTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAGTGGGGGCGGGAGGGGAATGGGGGACTTTAGGGATAGATTTG  444

seq1  AAATGTAAATGAAGAAAATATCTAAAAAAAAGTGTCAAAATATATTTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATGAAGAAAATATCTAAAAAAAAGTGTCAAAATATATTTTAA  494

seq1  AGTTAACAATAACTCAACATCGATAAAACTTTTCAAAATAACATAGAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACAATAACTCAACATCGATAAAACTTTTCAAAATAACATAGAATA  544

seq1  TTAGGAGTAAAGATAATTACTTAAAGAAAAAGGTATAGATAAGTACTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTAAAGATAATTACTTAAAGAAAAAGGTATAGATAAGTACTAGT  594

seq1  AATTTTCATATTCAATATTTTCTCATTAATTTGAAAAATATACTGTGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATATTCAATATTTTCTCATTAATTTGAAAAATATACTGTGCAG  644

seq1  ATATAAGATATTAATAAAGGTGAAATTTACTGTACTCTATGAGAGACTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATATTAATAAAGGTGAAATTTACTGTACTCTATGAGAGACTCT  694

seq1  GCTATATTGTCCCTTAATTTGGTTAGTGAGATATAATTCATAGAGCATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATTGTCCCTTAATTTGGTTAGTGAGATATAATTCATAGAGCATAA  744

seq1  AATTAACAACTTTAAAATGAATAATTCAATCCTTAATATGCAAATACCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAACTTTAAAATGAATAATTCAATCCTTAATATGCAAATACCCA  794

seq1  AAGTATTCAAATATTACTGTGAATTTATTGTGGACACATTAAAAAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCAAATATTACTGTGAATTTATTGTGGACACATTAAAAAAAATG  844

seq1  TAAGAGAGCACTACTAAAGCGAGTAAGCAACATCCTAAGACAGAAGCTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGCACTACTAAAGCGAGTAAGCAACATCCTAAGACAGAAGCTTG  894

seq1  CAGTGGGATACCTAGATAGATTGAGCAAGGTCTTATTTATAGACTCTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGATACCTAGATAGATTGAGCAAGGTCTTATTTATAGACTCTTGA  944

seq1  TATCTCTACAGCCATTAAATACTATTTTTATGATTGGGTTTAAAGAACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTACAGCCATTAAATACTATTTTTATGATTGGGTTTAAAGAACAA  994

seq1  AACTGTAATGTTCTAAGCAAAATGTTGAGCAGTTTTATTACCTTAAGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATGTTCTAAGCAAAATGTTGAGCAGTTTTATTACCTTAAGGAG  1044

seq1  AATTC  1053
      |||||
seq2  AATTC  1049

seq1: chr14_84331546_84332666
seq2: B6Ng01-053A24.g_69_1194

seq1  GAATTCTGCACTCATGCACTGCCAGTGGTACCCAGCTGCATTGTTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTCATGCACTGCCAGTGGTACCCAGCTGCATTGTTCTTCC  50

seq1  AACTGAAGGACTGAAGACCAGTGAACACCCATGATTTCTCCAGGCCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGGACTGAAGACCAGTGAACACCCATGATTTCTCCAGGCCATGG  100

seq1  GAGGCAGATGAGGACTGCTCTGTAAGATGCAGAAAATTGCATCTAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATGAGGACTGCTCTGTAAGATGCAGAAAATTGCATCTAATGTA  150

seq1  GAAAATTGGAACAGGGGCATGAGTGGTCATAGGAACTAAATTTGACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGAACAGGGGCATGAGTGGTCATAGGAACTAAATTTGACCTTG  200

seq1  GATTCCTTACCCTTTGGGAACTGAATTATGGGCCAAATTTAGAAATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTACCCTTTGGGAACTGAATTATGGGCCAAATTTAGAAATCTTT  250

seq1  GGAGAGATGCACTGAAAGAGCCTATGATTCTATAAGTACAACTTAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGCACTGAAAGAGCCTATGATTCTATAAGTACAACTTAATGGG  300

seq1  TGATCTAGTGAGATCTCAGAAAACAATGCCAACAGTGACGGCTGCAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTGAGATCTCAGAAAACAATGCCAACAGTGACGGCTGCAGACT  350

seq1  TTCTCAGCAATTAAAGTTGAAGTCCTTTTACATCTCATCCTCCAGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCAATTAAAGTTGAAGTCCTTTTACATCTCATCCTCCAGAGGGA  400

seq1  TTTTTTTCTCCTTTTGATCTATACCTGGAGGTTTCAAATGAGTTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCCTTTTGATCTATACCTGGAGGTTTCAAATGAGTTTGAGAT  450

seq1  TAAAAAAAAAAATGACTGAATGATTAATTTTGATCTTCCCTCCACCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAATGACTGAATGATTAATTTTGATCTTCCCTCCACCTGTC  500

seq1  ACATCCATGTCCTAACTGTAAACTGTGCCACAATGTTCATAGGCACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATGTCCTAACTGTAAACTGTGCCACAATGTTCATAGGCACCTCT  550

seq1  GCCTAAATCATAAGATGTACAAGGAACATAATATAGGACTAAGGCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATCATAAGATGTACAAGGAACATAATATAGGACTAAGGCTCAGA  600

seq1  CATTTTCCCAATTATATTGAAAGAAAAACCTGGGAAAAGGGGTCAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCAATTATATTGAAAGAAAAACCTGGGAAAAGGGGTCAGGAGT  650

seq1  GTGTATCTTTTTGAGCCAAAGAAGTAAGTGGATTTCTTTTCCAAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTTTTTGAGCCAAAGAAGTAAGTGGATTTCTTTTCCAAAGTAAA  700

seq1  TAACAAAAATGCTGGACTCTGTATCATCATATATTACAATTATCAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAATGCTGGACTCTGTATCATCATATATTACAATTATCAAAAAT  750

seq1  TGTGAAACTGTTAGTAAACTGATATATCTTGTTATATTTAATATCACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACTGTTAGTAAACTGATATATCTTGTTATATTTAATATCACATG  800

seq1  CTAACAATCTATTAAACAAACTTGTTTTAATTATATTTAACAAAGCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATCTATTAAACAAACTTGTTTTAATTATATTTAACAAAGCAAAC  850

seq1  AAACAAACAAACAACTAAATGCAGAAAATCTGGAGCTAAATGATGCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAACTAAATGCAGAAAATCTGGAGCTAAATGATGCTGTA  900

seq1  AACCAAATGAACCCAAAAGAATATTTCACCCAAATACAGAATATATCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATGAACCCAAAAGAATATTTCACCCAAATACAGAATATATCTTC  950

seq1  ATCATTTGACAC-TCTAAAGATTGTGAGACCTGGGATAATGGATTTGATA  999
      |||| ||||||| |||||||||||||| ||||||||||||||||||||||
seq2  ATCA-TTGACACTTCTAAAGATTGTGAAACCTGGGATAATGGATTTGATA  999

seq1  AATGAAGCAAACTCATAAGATACTTACTTTGTTTTCTT-GGAG-TTTTAA  1047
      |||||||||||||||||||| |||||| |||||||||| |||| ||||||
seq2  AATGAAGCAAACTCATAAGAAACTTAC-TTGTTTTCTTGGGAGTTTTTAA  1048

seq1  CAGAAGGACTTGCATTTCT-CCTCACATGATGCCATTCCT-GGACCATAT  1095
      |||||| |||||||||||| ||||||||||||||||| || |||||| ||
seq2  CAGAAGAACTTGCATTTCTCCCTCACATGATGCCATTTCTGGGACCAAAT  1098

seq1  TCT-GGCATTT-CTGTAGTGGAATTTTT  1121
      ||| ||||||| ||||||||||| ||||
seq2  TCTGGGCATTTCCTGTAGTGGAAATTTT  1126