BAC Information

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BAC

Clone NameB6Ng01-053H14
Chromosome14 (Build37)
Map Location 84,747,091 - 84,916,387
singlet/doubletdoublet
Overlap genePcdh17, 9630013A20Rik
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H14.bB6Ng01-053H14.g
ACCDH876511DH876512
length1,1271,152
definitionDH876511|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H14, 5' end.DH876512|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,747,091 - 84,748,233)(84,915,222 - 84,916,387)
sequence
gaattcattaactgatagctctagtaagaaaagtctttttaatggatcca
tcctctaaggatctctactaggatataactgtaaatgaaatagtgttaaa
gctgtacatagtgactatttcctataatccttgtactttgagatactgag
gcagaaggattacagttagaatccacccaaggctactcagtgagtatcta
aaaaatatgagccagtaacaaatgagttgaaaagtaaatcaaagcattat
tgtggtaacagtccagacatccacttctttatccaagaaataatgtcaat
ggtaccacaaacactttaaaattcaaatgaaatgtcataagcagatacag
atagaggaatagatagtgagaaagtctgcataaaagtcaatcactttata
tttatttaaccctggctaatccaatcttcttgttgctatatggtgtaagc
aagccactatctctcaaatttgcctatacagatgcaggaaagtagttctt
cctaacacataaaataataacaattaaggcgcattagtcaattctttatt
tgtacactaaaagctcgccacacaatatccatcattcaaaatattaataa
tgattagtgaaatcaaaatacagcaacaaactagccaaaacatgttaact
tgataactagataaattttttccattaatttacataatgattcattttac
atcttgatcagtgttctcctccttattcaccctcacagaatcccttcccc
tacccacctttccttctcctctgagaagttaggggccacctatgagtgac
acaaaaagtctcaacagagttagggtcaccactgacgccagacaagggag
cccagttggtgaacagattccaaagacaaacaacagttttagggacaatc
ccagctctcattgtttggggtacccacatggggactgaactgcatgtctg
ctacatatgtgccaggtgcatcagtacagcctgcttatgctctttggttg
gtgatcagtctctgagagcttcaagggtcagtatttgacctctgttgatt
tttgggacttctatcactttcgagccttcatcatgctcaaatctctgaga
gtccctaagcttgccacctcctcaccc
gaattcattcctacagaagacataggagaaaatgtatataacccatgata
ttgattaattttaattgctattagacatagtattatttctgtatattatt
cagattccttgtattttcatccaacctatcaacaaatgaacctctgtttc
taactgatggatcaccaatcaatatctaacgcattttagatacagccaaa
ctactatattattttaccataacatagataaagccatatatggtatagac
agactttaattggaaaaattcagtaagtttattgctgcaggctgaattga
aaccaagtcctccaaatttatttccatccagtactaaaacagaggaactt
atttagaaataaggtctttgagactgaaattccctaggatgaagtcacac
tggattacatttgctctaatgcaaagattattgtaagaagacaaagcaga
catagagacaggccgagagatctcaaaggggccagggtgacagacattag
aagtgcatccgagattgctgataactgcttgaagctaggaagaaacaagg
aagtgtgtctgaaacagcatggcacagctacctccttaattctgtaggta
tagtttctgtatatgtgagatcttacaaactgttgctttaaggcacataa
catcagcatgttgctacagcagctcttgccaactgatactgcctatttga
gaaagaaatgtcaagtcataaaagaaataagaagaaaaaaatatctctat
aaaggaaaacgggacaattagccacaaatttaaaaaaaaaaaaaaaaagc
actacaaagttcaaacttgtcaagttaattaaaggtttttttttgttttt
ttttggttttttgtttttttcccctatgcaatgattcctaaattcctttg
gccaaagagtattactgtatgctactgaaaatcaatgacattgactacag
acctgccagaccattatggaaattaatctttaaaaaaaattactcaaagc
accttgaattatagattccagtcttgaatttatagtcttggagttagata
caatttcgagaagttaaaattatttatgatgaaaaaactggaatcagtaa
aaatactttcactttttttggaaatgaaatgatttccaggtctcttgaga
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84747091_84748233
seq2: B6Ng01-053H14.b_45_1171

seq1  GAATTCATTAACTGATAGCTCTAGTAAGAAAAGTCTTTTTAATGGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACTGATAGCTCTAGTAAGAAAAGTCTTTTTAATGGATCCA  50

seq1  TCCTCTAAGGATCTCTACTAGGATATAACTGTAAATGAAATAGTGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAGGATCTCTACTAGGATATAACTGTAAATGAAATAGTGTTAAA  100

seq1  GCTGTACATAGTGACTATTTCCTATAATCCTTGTACTTTGAGATACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACATAGTGACTATTTCCTATAATCCTTGTACTTTGAGATACTGAG  150

seq1  GCAGAAGGATTACAGTTAGAATCCACCCAAGGCTACTCAGTGAGTATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGATTACAGTTAGAATCCACCCAAGGCTACTCAGTGAGTATCTA  200

seq1  AAAAATATGAGCCAGTAACAAATGAGTTGAAAAGTAAATCAAAGCATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGAGCCAGTAACAAATGAGTTGAAAAGTAAATCAAAGCATTAT  250

seq1  TGTGGTAACAGTCCAGACATCCACTTCTTTATCCAAGAAATAATGTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAACAGTCCAGACATCCACTTCTTTATCCAAGAAATAATGTCAAT  300

seq1  GGTACCACAAACACTTTAAAATTCAAATGAAATGTCATAAGCAGATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACAAACACTTTAAAATTCAAATGAAATGTCATAAGCAGATACAG  350

seq1  ATAGAGGAATAGATAGTGAGAAAGTCTGCATAAAAGTCAATCACTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAATAGATAGTGAGAAAGTCTGCATAAAAGTCAATCACTTTATA  400

seq1  TTTATTTAACCCTGGCTAATCCAATCTTCTTGTTGCTATATGGTGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAACCCTGGCTAATCCAATCTTCTTGTTGCTATATGGTGTAAGC  450

seq1  AAGCCACTATCTCTCAAATTTGCCTATACAGATGCAGGAAAGTAGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTATCTCTCAAATTTGCCTATACAGATGCAGGAAAGTAGTTCTT  500

seq1  CCTAACACATAAAATAATAACAATTAAGGCGCATTAGTCAATTCTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACATAAAATAATAACAATTAAGGCGCATTAGTCAATTCTTTATT  550

seq1  TGTACACTAAAAGCTCGCCACACAATATCCATCATTCAAAATATTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTAAAAGCTCGCCACACAATATCCATCATTCAAAATATTAATAA  600

seq1  TGATTAGTGAAATCAAAATACAGCAACAAACTAGCCAAAACATGTTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTGAAATCAAAATACAGCAACAAACTAGCCAAAACATGTTAACT  650

seq1  TGATAACTAGATAAATTTTTTCCATTAATTTACATAATGATTCATTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTAGATAAATTTTTTCCATTAATTTACATAATGATTCATTTTAC  700

seq1  ATCTTGATCAGTGTTCTCCTCCTTATTCACCCTCACAGAATCCCTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATCAGTGTTCTCCTCCTTATTCACCCTCACAGAATCCCTTCCCC  750

seq1  TACCCACCTTTCCTTCTCCTCTGAGAAGTTAGGGGCCACCTATGAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCTTTCCTTCTCCTCTGAGAAGTTAGGGGCCACCTATGAGTGAC  800

seq1  ACAAAAAGTCTCAACAGAGTTAGGGTCACCACTGACGCCAGACAAGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTCTCAACAGAGTTAGGGTCACCACTGACGCCAGACAAGGGAG  850

seq1  CCCAGTTGGTGAACAGATTCCAAAGACAAACAACAGTTTTAGGGACAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGTGAACAGATTCCAAAGACAAACAACAGTTTTAGGGACAATC  900

seq1  CCAGCTCTCATTGTTTGGGGTACCCACATGGGGACTGAACTGCATGTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCATTGTTTGGGGTACCCACATGGGGACTGAACTGCATGTCTG  950

seq1  CTACATATGTGCCAGGGTGCATCAGTACAGCCTGCTTATGCTCTTTGGTT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACATATGTGCCA-GGTGCATCAGTACAGCCTGCTTATGCTCTTTGGTT  999

seq1  GGTGGATCAGTCTCTGAGAGCTTCCAAGGGTCCAAGTTATTTGA-CTCTG  1049
      ||| ||||||||||||||||||| ||||||||  || ||||||| |||||
seq2  GGT-GATCAGTCTCTGAGAGCTT-CAAGGGTC--AG-TATTTGACCTCTG  1044

seq1  TTGATTTTTTTGTGGACTTCCTATCACCTTCCGAGCCTTCAATCATTGCT  1099
      |||||||||    |||||| |||||| ||| ||||||||| |||| ||||
seq2  TTGATTTTT---GGGACTT-CTATCA-CTTTCGAGCCTTC-ATCA-TGCT  1087

seq1  CCAAATCTTCTGTAAGAGTCCCTAAGCTTGCCACCTCCTCACCC  1143
       |||||| ||||  ||||||||||||||||||||||||||||||
seq2  -CAAATC-TCTG--AGAGTCCCTAAGCTTGCCACCTCCTCACCC  1127

seq1: chr14_84915222_84916387
seq2: B6Ng01-053H14.g_68_1219 (reverse)

seq1  GTTCTCAAGAGAACATGAGAATCATATCATTTTCCCAAAAAAGTTGAAAA  50
      ||||||||||| || ||  |||||| ||||||  ||||||||  ||||| 
seq2  GTTCTCAAGAG-ACCTGGAAATCATTTCATTT--CCAAAAAAAGTGAAAG  47

seq1  TTATTTTTTACTGATTTCATGTTATTTTTCATCATAATAATTTTTAACTA  100
      |   |||||||||||| || ||  |||||||||||||  | |||||||| 
seq2  T--ATTTTTACTGATTCCA-GT--TTTTTCATCATAAATAATTTTAACT-  91

seq1  TCT-GAAATTTAGTTATCATAACTTCAAGACTATGAATTCAAGACTTGAA  149
      ||| ||||||    |||| ||||| ||||||||| ||||||||||| |||
seq2  TCTCGAAATT---GTATC-TAACTCCAAGACTATAAATTCAAGACTGGAA  137

seq1  TTCTATAATTCAAGGTGCTTTGTGTTATTTTTTTTTAAAGATTAATTTCC  199
       ||||||||||||||||||||| | || ||||||||||||||||||||||
seq2  -TCTATAATTCAAGGTGCTTTGAG-TAATTTTTTTTAAAGATTAATTTCC  185

seq1  ATAATGGTCTGGCAGGTCTTGTAGTCATTGTCATTGATTTTCAGTAGCAT  249
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  ATAATGGTCTGGCAGGTC-TGTAGTCAATGTCATTGATTTTCAGTAGCAT  234

seq1  ACAGTTATAACTCTTTGGCCAAAGG-ATTTAGGAATCATTGCATAGGGGA  298
      ||||| || |||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGTAAT-ACTCTTTGGCCAAAGGAATTTAGGAATCATTGCATAGGGGA  283

seq1  AAAAAACAAAAAAACCAAAAAAAACCAAAAAAAAACCTTAATTTAACTTG  348
      ||||||| |||||||||||||||| |||||||||||||| | ||||||||
seq2  AAAAAAC-AAAAAACCAAAAAAAAACAAAAAAAAACCTTTAATTAACTTG  332

seq1  ACAAGTTTGAACTTTGTAGTGC-TTTTTTTTTTTTTTTTAAATTTGTGGC  397
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAAGTTTGAACTTTGTAGTGCTTTTTTTTTTTTTTTTTAAATTTGTGGC  382

seq1  TAATTGTCCCGTTTTCCTTTATAGAGATATTTTTTTCTTCTTATTTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCCGTTTTCCTTTATAGAGATATTTTTTTCTTCTTATTTCTTT  432

seq1  TATGACTTGACATTTCTTTCTC-AATAGGCAGTATCAGTTGGCAAGAGCT  496
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATGACTTGACATTTCTTTCTCAAATAGGCAGTATCAGTTGGCAAGAGCT  482

seq1  GCTGTAGCAACATGCTGATGTTATGTGCCTTAAAGCAACAGTTTGTAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCAACATGCTGATGTTATGTGCCTTAAAGCAACAGTTTGTAAGA  532

seq1  TCTCACATATACAGAAACTATACCTACAGAATTAAGGAGGTAGCTGTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATATACAGAAACTATACCTACAGAATTAAGGAGGTAGCTGTGCC  582

seq1  ATGCTGTTTCAGACACACTTCCTTGTTTCTTCCTAGCTTCAAGCAGTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTTCAGACACACTTCCTTGTTTCTTCCTAGCTTCAAGCAGTTAT  632

seq1  CAGCAATCTCGGATGCACTTCTAATGTCTGTCACCCTGGCCCCTTTGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCTCGGATGCACTTCTAATGTCTGTCACCCTGGCCCCTTTGAGA  682

seq1  TCTCTCGGCCTGTCTCTATGTCTGCTTTGTCTTCTTACAATAATCTTTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGGCCTGTCTCTATGTCTGCTTTGTCTTCTTACAATAATCTTTGC  732

seq1  ATTAGAGCAAATGTAATCCAGTGTGACTTCATCCTAGGGAATTTCAGTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCAAATGTAATCCAGTGTGACTTCATCCTAGGGAATTTCAGTCT  782

seq1  CAAAGACCTTATTTCTAAATAAGTTCCTCTGTTTTAGTACTGGATGGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCTTATTTCTAAATAAGTTCCTCTGTTTTAGTACTGGATGGAAA  832

seq1  TAAATTTGGAGGACTTGGTTTCAATTCAGCCTGCAGCAATAAACTTACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGAGGACTTGGTTTCAATTCAGCCTGCAGCAATAAACTTACTG  882

seq1  AATTTTTCCAATTAAAGTCTGTCTATACCATATATGGCTTTATCTATGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCAATTAAAGTCTGTCTATACCATATATGGCTTTATCTATGTT  932

seq1  ATGGTAAAATAATATAGTAGTTTGGCTGTATCTAAAATGCGTTAGATATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAATAATATAGTAGTTTGGCTGTATCTAAAATGCGTTAGATATT  982

seq1  GATTGGTGATCCATCAGTTAGAAACAGAGGTTCATTTGTTGATAGGTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGATCCATCAGTTAGAAACAGAGGTTCATTTGTTGATAGGTTGG  1032

seq1  ATGAAAATACAAGGAATCTGAATAATATACAGAAATAATACTATGTCTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATACAAGGAATCTGAATAATATACAGAAATAATACTATGTCTAA  1082

seq1  TAGCAATTAAAATTAATCAATATCATGGGTTATATACATTTTCTCCTATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTAAAATTAATCAATATCATGGGTTATATACATTTTCTCCTATG  1132

seq1  TCTTCTGTAGGAATGAATTC  1166
      ||||||||||||||||||||
seq2  TCTTCTGTAGGAATGAATTC  1152