BAC Information

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BAC

Clone NameB6Ng01-053H18
Chromosome14 (Build37)
Map Location 42,629,079 - 42,777,994
singlet/doubletdoublet
Overlap geneLOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H18.bB6Ng01-053H18.g
ACCDH876519DH876520
length1,1401,111
definitionDH876519|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H18, 5' end.DH876520|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,629,079 - 42,630,226)(42,776,888 - 42,777,994)
sequence
gaattccagaacaaatttaaaaccatgtcggtgtgctgggcatggtggtg
catgcctgtaatctcagcactcaggaggcagaggcaggtggatttctgca
ttcagttcaaggtaatcctggtatacaaagtgagctccaggacagccaga
gctatacagagaaaccctgtcttaaaaaaaacaaacaaacaaagaaatgc
cttgtgtagtagcataagaatactttaatctctgcacttgaaaggcagca
cttgcaggcagatatctgtgagtttgaggccaatatggtcccatgagtcc
caaaacaggcagggcttcatagagagaccctatctcaaagaataaataaa
tctaaaaataaagttctatacacacaatgaaaatgtgatatagttatgca
aggataacacaatagatgtaaatcaaataaatgtatctcagcacaaaaat
agtctcaaaaattaatagttgaattgtcatctcagtacctgcagaaaatg
cattgcacatgtccatcatcacctcatgataaaattcctgaagaaactag
gaataggagaaacatgcctcacccgaataaatcttctattcaacaaacat
agtcaacattatggtaatgggagagagaaaaggtctgtataaaacaagaa
acaagaccagagtatacattctctctgcctcattcaacataatacctgag
acttagaagcaatgagcaagtataaagaaacaagatagaaagagaaaata
aacatgtggatccctgcaaactctactttcattagggaagtggtcttggt
gaagtaagaagaaaagtaagatcagtttcaaattagtcagcaaggctggt
tcaaacttctggagcttggtgcctagtggatgaatttttacaaatctgaa
ctcagtaaaactttggaaaatggttcctgttgacaggtactacaagaaaa
ctttagcatgactaggtcagaactcctctcaaagtatatgacttcaacaa
agcacccatgacttttcaccagaatgagttgtcctgacagagaaagcatt
tgagttctagtagaagtcaacttacattgaagaatgataccctttaccaa
atggtgcctgccaaggtgggtcctcatttgtgtgaaaaga
gaattctttttatagtgagggattgttctgtaatcttatgagtcccatta
ccttttacagagaagaaaggggacagaagtaattgaagctcatgggtatt
taaaatctatactcaattaggttagggaggggagctgggaaactgatgag
ataacaatcaataaagctagggtcaggaggccattcaggtgtgaatttct
gagtgacttttctactcttttttttataatttatttttattcattttcta
atcagaattacaaatagggacaaaaccaacaaagaatgtttcatgacaca
tgaagcaaaaataaaagcaactatatgaaacaccaggaaaaatacatata
cctcctatcaaagacaaaaaaactgatccccttaagatagaaggaacaca
gaagtcaaggaaattctggcatcccagtgcaaaatcaaggttgagaagga
ggggatgacccaaatctgctgaaagagaagtatgcttcttagacacactg
tcacactcctgagaaagaaatgcatatggtcaaattctcttagctaccag
aatgacaggaatcttcgtctccaccagacatatttcagtgggcctgtggt
tattccacattactgaatcaagcatacacacaccacaggattgctaagta
gtgccacttatatccataattgtttaaataacataatcatctattctcta
cccatgagctgagtttcctaataatatttttcaccactaatcttcagcta
aatcaactagggaatgtccccatgataaaacacatttgacgtctgtctct
actgccaagctgtattaaatgcaaacgacataggcataatgtaagtattt
tatgctgctctgtatctgaattaaaaaaaaaatgagaagagctctcgagt
aaaaagagtaaaatgttcacctgaagacattgtgcagccaagatttactg
gggagagcaaaatctctcatcatgtacctccttacataatcataataaca
ttgaaattatataaaatatatatccataagacttttctactcttaaacag
aaattttccaccaaactgaacattccctcaacccacagggcaatttaggt
ggattttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42629079_42630226
seq2: B6Ng01-053H18.b_43_1182

seq1  GAATTCCAGAACAAATTTAAAACCATGTCGGTGTGCTGGGCATGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAAATTTAAAACCATGTCGGTGTGCTGGGCATGGTGGTG  50

seq1  CATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGCA  100

seq1  TTCAGTTCAAGGTAATCCTGGTATACAAAGTGAGCTCCAGGACAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAAGGTAATCCTGGTATACAAAGTGAGCTCCAGGACAGCCAGA  150

seq1  GCTATACAGAGAAACCCTGTCTTAAAAAAAACAAACAAACAAAGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTCTTAAAAAAAACAAACAAACAAAGAAATGC  200

seq1  CTTGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAAAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAAAGGCAGCA  250

seq1  CTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATATGGTCCCATGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATATGGTCCCATGAGTCC  300

seq1  CAAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATAAATAAA  350

seq1  TCTAAAAATAAAGTTCTATACACACAATGAAAATGTGATATAGTTATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATAAAGTTCTATACACACAATGAAAATGTGATATAGTTATGCA  400

seq1  AGGATAACACAATAGATGTAAATCAAATAAATGTATCTCAGCACAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACACAATAGATGTAAATCAAATAAATGTATCTCAGCACAAAAAT  450

seq1  AGTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTGCAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTGCAGAAAATG  500

seq1  CATTGCACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAG  550

seq1  GAATAGGAGAAACATGCCTCACCCGAATAAATCTTCTATTCAACAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAGAAACATGCCTCACCCGAATAAATCTTCTATTCAACAAACAT  600

seq1  AGTCAACATTATGGTAATGGGAGAGAGAAAAGGTCTGTATAAAACAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATTATGGTAATGGGAGAGAGAAAAGGTCTGTATAAAACAAGAA  650

seq1  ACAAGACCAGAGTATACATTCTCTCTGCCTCATTCAACATAATACCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCAGAGTATACATTCTCTCTGCCTCATTCAACATAATACCTGAG  700

seq1  ACTTAGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATA  750

seq1  AACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGGTCTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGGTCTTGGT  800

seq1  GAAGTAAGAAGAAAAGTAAGATCAG-TTCAAATTAGTCAGCAAGGCTGGT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGTAAGAAGAAAAGTAAGATCAGTTTCAAATTAGTCAGCAAGGCTGGT  850

seq1  TCAAACTTCTGGAGCTTGGTGCCTAGTGGATGAATTTTTACAAATCTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCTGGAGCTTGGTGCCTAGTGGATGAATTTTTACAAATCTGAA  900

seq1  CTCAGTAAAACTTTGGAAAATGGTTCCTGTTGACAGGTACTACAAGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAAACTTTGGAAAATGGTTCCTGTTGACAGGTACTACAAGAAAA  950

seq1  CTTTAGGCATGACTAGGTCAGAACTCCTCTTCAAAGTATATGACTTCAAC  999
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTA-GCATGACTAGGTCAGAACTCCTC-TCAAAGTATATGACTTCAAC  998

seq1  AAAGCACCCATGACCTTTTCACCCAGAATGAGTTGTCCTGACAGAGAAAA  1049
      ||||||||||||| ||||||| ||||||||||||||||||||||||||| 
seq2  AAAGCACCCATGA-CTTTTCA-CCAGAATGAGTTGTCCTGACAGAGAAA-  1045

seq1  GGCATGTGAGTTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAGGATAC  1099
       |||| ||||||||||||  |||||| |||||||||||||| || |||||
seq2  -GCATTTGAGTTCTAGTA--GAAGTC-AACTTACATTGAAG-AATGATAC  1090

seq1  CC-TTACCAAATGGTGCCTGGCCATGTGGGTCCTCATATGTGTGAAAAGA  1148
      || ||||||||||||||||| | | |||||||||||| ||||||||||||
seq2  CCTTTACCAAATGGTGCCTGCCAAGGTGGGTCCTCATTTGTGTGAAAAGA  1140

seq1: chr14_42776888_42777994
seq2: B6Ng01-053H18.g_67_1177 (reverse)

seq1  AGAG-AAATCAACTTAAA-TGCCCTGT-GGTTGA-GGAATG-TCAG-TTG  44
      |||| ||||| || |||| |||||||| |||||| |||||| |||| |||
seq2  AGAGAAAATCCACCTAAATTGCCCTGTGGGTTGAGGGAATGTTCAGTTTG  50

seq1  GTGGAAATATTTCTG-TTAAGAGTAGAAAAGTCTTATTGATATATA-TTT  92
      ||||||| ||||||| ||||||||||||||||||||| |||||||| |||
seq2  GTGGAAA-ATTTCTGTTTAAGAGTAGAAAAGTCTTATGGATATATATTTT  99

seq1  ATATAATTTCAATGTTATTATGATTATGTAAGGAGGTACATGATGAGAGA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTCAATGTTATTATGATTATGTAAGGAGGTACATGATGAGAGA  149

seq1  TTTTGCCTCT-CCCAGTAAATCTTGGCTTGCACAATGTCTTCAGGTGAAC  191
      ||||| |||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTTTG-CTCTCCCCAGTAAATCTTGGC-TGCACAATGTCTTCAGGTGAAC  197

seq1  ATTTTTACTCTTCTTTACTTCGAGAGCTCTTCTCATTTTTTTTTTAAATT  241
      | |||||||||| ||||| |||||||||||||||||||||||||| ||||
seq2  A-TTTTACTCTT-TTTAC-TCGAGAGCTCTTCTCATTTTTTTTTT-AATT  243

seq1  CAGATACAGAGCAGCAT-AAATACTTACATTATGCCTATGTCGTTTGCAT  290
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGATACAGAGCAGCATAAAATACTTACATTATGCCTATGTCGTTTGCAT  293

seq1  TTAATACAGCTTGGCAGTAGAGACAGACGTCAAATGTGTTTTATCATGGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGCTTGGCAGTAGAGACAGACGTCAAATGTGTTTTATCATGGG  343

seq1  GACATTCCCTAGTTGATTTAGCTGAAGATTAGTGGTG-AAAATATTATTA  389
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACATTCCCTAGTTGATTTAGCTGAAGATTAGTGGTGAAAAATATTATTA  393

seq1  GGAAACTCAGCTCATGGGTAGAGAATAGATGATTATGTTATTTAAACAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCAGCTCATGGGTAGAGAATAGATGATTATGTTATTTAAACAAT  443

seq1  TATGGATATAAGTGGCACTACTTAGCAATCCTGTGGTGTGTGTATGCTTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATATAAGTGGCACTACTTAGCAATCCTGTGGTGTGTGTATGCTTG  493

seq1  ATTCAGTAATGTGGAATAACCACAGGCCCACTGAAATATGTCTGGTGGAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAATGTGGAATAACCACAGGCCCACTGAAATATGTCTGGTGGAG  543

seq1  ACGAAGATTCCTGTCATTCTGGTAGCTAAGAGAATTTGACCATATGCATT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGATTCCTGTCATTCTGGTAGCTAAGAGAATTTGACCATATGCATT  593

seq1  TCTTTCTCAGGAGTGTGACAGTGTGTCTAAGAAGCATACTTCTCTTTCAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAGGAGTGTGACAGTGTGTCTAAGAAGCATACTTCTCTTTCAG  643

seq1  CAGATTTGGGTCATCCCCTCCTTCTCAACCTTGATTTTGCACTGGGATGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGGGTCATCCCCTCCTTCTCAACCTTGATTTTGCACTGGGATGC  693

seq1  CAGAATTTCCTTGACTTCTGTGTTCCTTCTATCTTAAGGGGATCAGTTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCCTTGACTTCTGTGTTCCTTCTATCTTAAGGGGATCAGTTTT  743

seq1  TTTGTCTTTGATAGGAGGTATATGTATTTTTCCTGGTGTTTCATATAGTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTGATAGGAGGTATATGTATTTTTCCTGGTGTTTCATATAGTT  793

seq1  GCTTTTATTTTTGCTTCATGTGTCATGAAACATTCTTTGTTGGTTTTGTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATTTTTGCTTCATGTGTCATGAAACATTCTTTGTTGGTTTTGTC  843

seq1  CCTATTTGTAATTCTGATTAGAAAATGAATAAAAATAAATTATAAAAAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTAATTCTGATTAGAAAATGAATAAAAATAAATTATAAAAAAA  893

seq1  AGAGTAGAAAAGTCACTCAGAAATTCACACCTGAATGGCCTCCTGACCCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAAAAGTCACTCAGAAATTCACACCTGAATGGCCTCCTGACCCT  943

seq1  AGCTTTATTGATTGTTATCTCATCAGTTTCCCAGCTCCCCTCCCTAACCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTGATTGTTATCTCATCAGTTTCCCAGCTCCCCTCCCTAACCT  993

seq1  AATTGAGTATAGATTTTAAATACCCATGAGCTTCAATTACTTCTGTCCCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTATAGATTTTAAATACCCATGAGCTTCAATTACTTCTGTCCCC  1043

seq1  TTTCTTCTCTGTAAAAGGTAATGGGACTCATAAGATTACAGAACAATCCC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTGTAAAAGGTAATGGGACTCATAAGATTACAGAACAATCCC  1093

seq1  TCACTATAAAAAGAATTC  1107
      ||||||||||||||||||
seq2  TCACTATAAAAAGAATTC  1111