BAC Information

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BAC

Clone NameB6Ng01-053K01
Chromosome14 (Build37)
Map Location 80,511,911 - 80,599,955
singlet/doubletdoublet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053K01.bB6Ng01-053K01.g
ACCDH876623DH876624
length1,0391,038
definitionDH876623|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K01, 5' end.DH876624|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,511,911 - 80,512,747)(80,598,922 - 80,599,955)
sequence
gaattcttttgcaatgtaaaaaaaaaaaaaaaaaaaaaaaaaagaatgtg
tgcttgctgtctcccaaaaaatcaaggtgctaggatcctgggaggctgat
ttatagggtagtcaaaggggaacctggagtaaatgactggattgatatgt
aaaatagaagaattttttagaatagcaagagagaagggcttggagaaatg
tctcaagcagaaaagagagggagctgtctggaaatctctggagaaaaagc
agaacagaggaaaagcaacctggaaagctgtcttgtgcagaacataggtc
atcagcttgggccacgatttgactttgagtcatttgttttgtagctctca
aacaccccttctctcagaacccctctccaagccctggctggtcccttaca
ctgagccacatagggtttcccagcaaacaacacaatctctggtttcacag
agtgatcaaatatcctgcaacaagagtctttgtagaatggtgggacatct
tttgtgtatgtgcctaagaatgctatagctgagtagaactagtcccaatt
ttctgagaaactgccaaattgatatctaaagtggctgtacaagtttgcac
tcccaccagcaatagaggaatgttccccttgctccacatcctggccagca
tgtgctgtcatttgcgtttaatgagtttcagtgacttaaaaaaatgttca
tggtagagtttatttttattattataaagcaacctacagtgcatgagata
catgggggaagtatttgaaatatggaatgtgcattatattagattaaagg
aatatatgttatactgaaagtgtggagaaagtataacaacatacgctggc
tggttttgtgtcacttgatacaagttgggagttatcacagagaaaggagc
ctcccttgaggaaatgcctccattaaggcattttcctcaattagtggacc
aacagagggaaactagctccattgtgggtggtgccattcctggcctggta
gtcttgagtctataagaagcaaactgagcagccagggaa
gaattccttttatctttcttttaagttccaatgaatatatatatatatat
attcattctgtgaaatgttgtctattcactgttttaatttctttgcattc
aggtcgctctctcataagtgttccttgtatattctgatagtaaagtactt
ggaagatatacatgcagagtgaacttccatctcactctacaaattacctt
ttcggttttcgttagtgtattttgaagaagttcttcactttgaagaaatg
caaattattgtcttttaaggtagtattttatggcttttctgtcctaccta
ggtaatacttctttatcctgctgttacagagattttttttttaacctagc
tcattttctcaaaacttgatagatagaggtttgacctttacatctgtgat
ccattttaaattacttttttgtgtggtattagtaaagggtcaatgtttgc
tttgttttgttttgtttctcatatggatagccagctgctgtggttccact
cgttgaaaatgatgttcacttttctgttaaattctattgttgcctttgtt
gaaatgggttgtgtacacgtagctctatttccaaatctgttctgttccac
tatctgcctgtctctctgacaattccatactgtcctgactactgtgttta
caatgaattgtgaaaccagatcatatttgccctctaacctttctgggcaa
accgtttgcactaaatataagacaggtttggttttgttttaacatttctg
gataaaatgctagaattggcttctcaatttctataaaagtggcctctgag
acttgagctgagagttgcttgaagtctctctttcaattagaagaaaatga
caacataacaggcttggaacagctagtctgcaagcatgtttgcaagaggt
ttactcatttgcattttgaattttcttccagggatgattattattttaaa
cacccagactttttattttattttatttactttaaagtcactttaatgtt
tcattaacattccttaccatcctaggggcgtatcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80511911_80512747
seq2: B6Ng01-053K01.b_244_1081

seq1  CTCAAGCAGAAAAGAGAGGGAGCTGTCTGGAAATCTCTGGAGAAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGAAAAGAGAGGGAGCTGTCTGGAAATCTCTGGAGAAAAAGCA  50

seq1  GAACAGAGGAAAAGCAACCTGGAAAGCTGTCTTGTGCAGAACATAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGAAAAGCAACCTGGAAAGCTGTCTTGTGCAGAACATAGGTCA  100

seq1  TCAGCTTGGGCCACGATTTGACTTTGAGTCATTTGTTTTGTAGCTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGGCCACGATTTGACTTTGAGTCATTTGTTTTGTAGCTCTCAA  150

seq1  ACACCCCTTCTCTCAGAACCCCTCTCCAAGCCCTGGCTGGTCCCTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTTCTCTCAGAACCCCTCTCCAAGCCCTGGCTGGTCCCTTACAC  200

seq1  TGAGCCACATAGGGTTTCCCAGCAAACAACACAATCTCTGGTTTCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACATAGGGTTTCCCAGCAAACAACACAATCTCTGGTTTCACAGA  250

seq1  GTGATCAAATATCCTGCAACAAGAGTCTTTGTAGAATGGTGGGACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAATATCCTGCAACAAGAGTCTTTGTAGAATGGTGGGACATCTT  300

seq1  TTGTGTATGTGCCTAAGAATGCTATAGCTGAGTAGAACTAGTCCCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGTGCCTAAGAATGCTATAGCTGAGTAGAACTAGTCCCAATTT  350

seq1  TCTGAGAAACTGCCAAATTGATATCTAAAGTGGCTGTACAAGTTTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAACTGCCAAATTGATATCTAAAGTGGCTGTACAAGTTTGCACT  400

seq1  CCCACCAGCAATAGAGGAATGTTCCCCTTGCTCCACATCCTGGCCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCAATAGAGGAATGTTCCCCTTGCTCCACATCCTGGCCAGCAT  450

seq1  GTGCTGTCATTTGCGTTTAATGAGTTTCAGTGACTTAAAAAAATGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCATTTGCGTTTAATGAGTTTCAGTGACTTAAAAAAATGTTCAT  500

seq1  GGTAGAGTTTATTTTTATTATTATAAAGCAACCTACAGTGCATGAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTTTATTTTTATTATTATAAAGCAACCTACAGTGCATGAGATAC  550

seq1  AT-GGGGAAGTATTTGAAATATGGAATGTGCATTATATTAGATTAAAGGA  599
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAAGTATTTGAAATATGGAATGTGCATTATATTAGATTAAAGGA  600

seq1  ATATATGTTATACTGAAAGTGTGGAGAAAGTATAACAACATACGCTGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTATACTGAAAGTGTGGAGAAAGTATAACAACATACGCTGGCT  650

seq1  GGTTTTGTGTCAACTTGATACAAGTT-GGAGTTATCACAGAGAAAGGAGC  698
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GGTTTTGTGTC-ACTTGATACAAGTTGGGAGTTATCACAGAGAAAGGAGC  699

seq1  CTCCCTTGAGGAAATGCCTCCATT-AGGCATTTT-CTCAATTAGT-GACC  745
      |||||||||||||||||||||||| ||||||||| |||||||||| ||||
seq2  CTCCCTTGAGGAAATGCCTCCATTAAGGCATTTTCCTCAATTAGTGGACC  749

seq1  AACAGAGGGAAACCTAGC-CCATTGTGGGTGGTGCCATTCCTGGCCTGGT  794
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AACAGAGGGAAA-CTAGCTCCATTGTGGGTGGTGCCATTCCTGGCCTGGT  798

seq1  AGTCCTGAGTTCTATAAGAAAGCAAACTGAGCAAGCCAGGGAA  837
      |||| |||| |||||||| ||||||||||||| ||||||||||
seq2  AGTCTTGAG-TCTATAAG-AAGCAAACTGAGC-AGCCAGGGAA  838

seq1: chr14_80598922_80599955
seq2: B6Ng01-053K01.g_69_1106 (reverse)

seq1  GAATGATTAGCACCTAGGATGGTAAGG-ATGGTAATGAAACA-TAAAGTA  48
      |||||||  || ||||||||||||||| ||| |||||||||| |||||| 
seq2  GAATGATACGCCCCTAGGATGGTAAGGAATGTTAATGAAACATTAAAGTG  50

seq1  GCTTT-AAGTAAATATAATAAAATATAAAGTCTTGTGTGTTTAAAATAAT  97
       |||| ||||||||| ||||||||| |||||| || ||||||||||||||
seq2  ACTTTAAAGTAAATAAAATAAAATAAAAAGTC-TGGGTGTTTAAAATAAT  99

seq1  AATCATCCCTGGGAGAAAATTTCAAAATTGCAAATGAGTAAACCTC-TGC  146
      |||||||||||| |||||| ||||||| |||||||||||||||||| |||
seq2  AATCATCCCTGGAAGAAAA-TTCAAAA-TGCAAATGAGTAAACCTCTTGC  147

seq1  -AACATGCTTGCAGACTAGCTGTTCCAAGCCTGTTATGTTGTTCATTTTC  195
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACATGCTTGCAGACTAGCTGTTCCAAGCCTGTTATGTTG-TCATTTTC  196

seq1  -TCTAATTTGAAAGAGAGAC-TCAAGGCACTCTCAGCTCAAGTCTCAGAG  243
       ||||| ||||||||||||| |||||  ||||||||||||||||||||||
seq2  TTCTAA-TTGAAAGAGAGACTTCAAGCAACTCTCAGCTCAAGTCTCAGAG  245

seq1  GCCACTTTTATAGAAATTGAGAAGCCAATTCTAGCA-TTTATCCAGAAAT  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCACTTTTATAGAAATTGAGAAGCCAATTCTAGCATTTTATCCAGAAAT  295

seq1  GTTAAAACAAAACCAAACCTGTCTTATATTTAGTGCAAACGGTTTG-CCA  341
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTAAAACAAAACCAAACCTGTCTTATATTTAGTGCAAACGGTTTGCCCA  345

seq1  GAAAGGTTAGAGGGCAAATATGATCTGGTTTCACAATTCATTGTAAACAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTAGAGGGCAAATATGATCTGGTTTCACAATTCATTGTAAACAC  395

seq1  AGTAGTCAGGACAGTATGGAATTGTCAGAGAGACAGGCAGATAGTGGAAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAGGACAGTATGGAATTGTCAGAGAGACAGGCAGATAGTGGAAC  445

seq1  AGAACAGATTTGGAAATAGAGCTACGTGTACACAACCCATTTCAACAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATTTGGAAATAGAGCTACGTGTACACAACCCATTTCAACAAAG  495

seq1  GCAACAATAGAATTTAACAGAAAAGTGAACATCATTTTCAACGAGTGGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATAGAATTTAACAGAAAAGTGAACATCATTTTCAACGAGTGGAA  545

seq1  CCACAGCAGCTGGCTATCCATATGAGAAACAAAACAAAACAAAGCAAACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGCTGGCTATCCATATGAGAAACAAAACAAAACAAAGCAAACA  595

seq1  TTGACCCTTTACTAATACCACACAAAAAAGTAATTTAAAATGGATCACAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTTTACTAATACCACACAAAAAAGTAATTTAAAATGGATCACAG  645

seq1  ATGTAAAGGTCAAACCTCTATCTATCAAGTTTTGAGAAAATGAGCTAGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGGTCAAACCTCTATCTATCAAGTTTTGAGAAAATGAGCTAGGT  695

seq1  TAAAAAAAAAATCTCTGTAACAGCAGGATAAAGAAGTATTACCTAGGTAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAATCTCTGTAACAGCAGGATAAAGAAGTATTACCTAGGTAG  745

seq1  GACAGAAAAGCCATAAAATACTACCTTAAAAGACAATAATTTGCATTTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAAGCCATAAAATACTACCTTAAAAGACAATAATTTGCATTTCT  795

seq1  TCAAAGTGAAGAACTTCTTCAAAATACACTAACGAAAACCGAAAAGGTAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGAAGAACTTCTTCAAAATACACTAACGAAAACCGAAAAGGTAA  845

seq1  TTTGTAGAGTGAGATGGAAGTTCACTCTGCATGTATATCTTCCAAGTACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGTGAGATGGAAGTTCACTCTGCATGTATATCTTCCAAGTACT  895

seq1  TTACTATCAGAATATACAAGGAACACTTATGAGAGAGCGACCTGAATGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCAGAATATACAAGGAACACTTATGAGAGAGCGACCTGAATGCA  945

seq1  AAGAAATTAAAACAGTGAATAGACAACATTTCACAGAATGAATATATATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAAACAGTGAATAGACAACATTTCACAGAATGAATATATATA  995

seq1  TATATATATTCATTGGAACTTAAAAGAAAGATAAAAGGAATTC  1034
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATTCATTGGAACTTAAAAGAAAGATAAAAGGAATTC  1038