BAC Information

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BAC

Clone NameB6Ng01-054L11
Chromosome14 (Build37)
Map Location 111,636,088 - 111,729,518
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L11.bB6Ng01-054L11.g
ACCDH877387DH877388
length1,0811,101
definitionDH877387|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L11, 5' end.DH877388|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,728,420 - 111,729,518)(111,636,088 - 111,637,195)
sequence
gaattcattatgaaaaatatattaataagcttataaggcaattaaattct
aggtattaatatgaattttatgaagaaactgagaaaactggaggaaaaaa
gaaatcttactatttttaagccacatattacttaaaccaatatttgtatg
atataaattaattaattctcttgatatttggaagtaagatttatatagtc
atgctgaatatatagttcataagactataaatatagtaaatatatatgga
ccttccatattacaataaaaagttctagattctttcaaagctttatgcta
gcaggaagcatatgaagatgtctagcacataatgtcaaaatctatggact
tatttttctctaagaagttcattggttaaaataaataaaacatttcttac
ccttccatagcataaattaattgattaattttgttgctaaaataaatgca
aaaaatcctgattttattatatttctatttttaccttcaacaacaacaac
aacaacaacaaaatacttagctgtggtgctagcctgaaaaatacgctcct
aaagtgtccacataataaaatgtaggcaaatttactaatattattgagtt
aagtacattgagaaaagcattatttttcttagattttcttggtcagccat
ttctaatcaagtgaattctccaaaccatttggttcatatctgcttgtttt
aatccaaaaagggttgagagaaaaacaaggtgaagaaaaagtactgctga
cctttaaggtggagagaggtctacctggaaagtgggaaaggcaaagaggg
atacctctggcttattcaatgagatttgtagcacaacaaacctctactct
aaggatccatatctgaagccttcgtacattacagctttatgggagttcct
taactgagtcacagaattagaacctgctatatgtggacacatatgactac
cagtgctccagactcgtgtctctggtgcacatgtagcagagatggcctag
tcgtcatcactggaagagagccccttgtcttgcaactttatatgtccagt
acatgggaccacaggccaagatgtggagtgg
gaattcaggatatgatcccagaaatcctctttatcacatttttgcctcat
tttttgagacaagttcccccaaacatgcccagagcttaccagagcagcta
ggctcacaagcctttttcctatgggaaagctgtctctgcattctaaggct
gagattacaggcagcaatctcctttacctagccttatgttaggttaaggt
agccaaagagtgacctcttgcttgtgtcacaagtgtttcaattttgtgtc
tatatctctacatacttttttttgtcattttaatacgtcttttaatacat
ttaattttaaaactgtattttattttgaaacataaattactaatcacctc
ttaagtttgggataatgtttttcaaaggagcttgataatcattataatga
attttcctttgaggtatgacatcattgctttttaaaattaattgaagagg
gagagcatggccttttgagttttcagtcatttaccagtaaaacagaacaa
aacattaacattcatgaggccatttgaaactagctcatagtctcataatt
tagcgctttttcttactatcctaaatttatgctaattatgttttctttaa
tgaacacaaatcactatactcataacttatatttctattaaaatgttttt
taaagaaagttgaaaacaccagtattgttataaatgcgtacataaacgtt
tacacacagatacatattctatacataaatgacatgacatagggacactt
taattcttctctgcctacattaccttaggacaaataattgtgtacagaag
acacacacacacacacacacacacacacactcaggtgcacacacatgcac
aataaaaacgtgcaaagtattgtaaaactacgatgtattttacatgtgaa
gaatttcagtcacattgtccactctctttcaaaaatagataatatctatc
aatggcagtgcatattctagtcaactgagcaaatgcaatgctgtcttcca
ggtaatatgatatcatggtcctaaaccttgattttttttgttccttaata
aaacaagaagcaatcctcaaagccaataacagttaatagatgctattctt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111728420_111729518
seq2: B6Ng01-054L11.b_46_1126 (reverse)

seq1  CCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAG  50
      ||||| |||| ||||||||   ||| |||| |||||| || |||||||||
seq2  CCACT-CCACATCTTGGCC--TGTGGTCCCATGTACT-GGACATATAAAG  46

seq1  TTTGCAAGACCAAGGGGGCTCTCTTTCCAGTGATGACCGACTAGGCCATC  100
       |||||||||  | ||||||||| |||||||||||| |||||||||||||
seq2  -TTGCAAGAC--AAGGGGCTCTC-TTCCAGTGATGA-CGACTAGGCCATC  91

seq1  TTCTGCTACATGTGCACCCAGAGACACGAGTTCTGGGAGCACTGGTTAGT  150
       ||||||||||||||| ||||||||||||| ||| |||||||||| ||| 
seq2  -TCTGCTACATGTGCA-CCAGAGACACGAG-TCT-GGAGCACTGG-TAG-  135

seq1  TCATATTGTTGTTCCACATATAGCAGGTTCTAATTCTGTGACTCAGTTAA  200
      ||||| |||   ||||||||||||||||||||||||||||||||||||||
seq2  TCATA-TGT--GTCCACATATAGCAGGTTCTAATTCTGTGACTCAGTTAA  182

seq1  GGAACTCCCATAAAGCTGTAATGTACGAAGGCTTCAGATATGGATCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCCATAAAGCTGTAATGTACGAAGGCTTCAGATATGGATCCTTA  232

seq1  GAGTAGAGGTTTGTTGTGCTACAAATCTCATTGAATAAGCCAGAGGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGGTTTGTTGTGCTACAAATCTCATTGAATAAGCCAGAGGTATC  282

seq1  CCTCTTTGCCTTTCCCACTTTCCAGGTAGACCTCTCTCCACCTTAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCCTTTCCCACTTTCCAGGTAGACCTCTCTCCACCTTAAAGGT  332

seq1  CAGCAGTACTTTTTCTTCACCTTGTTTTTCTCTCAACCCTTTTTGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTACTTTTTCTTCACCTTGTTTTTCTCTCAACCCTTTTTGGATTA  382

seq1  AAACAAGCAGATATGAACCAAATGGTTTGGAGAATTCACTTGATTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCAGATATGAACCAAATGGTTTGGAGAATTCACTTGATTAGAAA  432

seq1  TGGCTGACCAAGAAAATCTAAGAAAAATAATGCTTTTCTCAATGTACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACCAAGAAAATCTAAGAAAAATAATGCTTTTCTCAATGTACTTA  482

seq1  ACTCAATAATATTAGTAAATTTGCCTACATTTTATTATGTGGACACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATAATATTAGTAAATTTGCCTACATTTTATTATGTGGACACTTTA  532

seq1  GGAGCGTATTTTTCAGGCTAGCACCACAGCTAAGTATTTTGTTGTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGTATTTTTCAGGCTAGCACCACAGCTAAGTATTTTGTTGTTGTTG  582

seq1  TTGTTGTTGTTGAAGGTAAAAATAGAAATATAATAAAATCAGGATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGAAGGTAAAAATAGAAATATAATAAAATCAGGATTTTTT  632

seq1  GCATTTATTTTAGCAACAAAATTAATCAATTAATTTATGCTATGGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTTTAGCAACAAAATTAATCAATTAATTTATGCTATGGAAGGG  682

seq1  TAAGAAATGTTTTATTTATTTTAACCAATGAACTTCTTAGAGAAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGTTTTATTTATTTTAACCAATGAACTTCTTAGAGAAAAATAA  732

seq1  GTCCATAGATTTTGACATTATGTGCTAGACATCTTCATATGCTTCCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGATTTTGACATTATGTGCTAGACATCTTCATATGCTTCCTGCT  782

seq1  AGCATAAAGCTTTGAAAGAATCTAGAACTTTTTATTGTAATATGGAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGCTTTGAAAGAATCTAGAACTTTTTATTGTAATATGGAAGGT  832

seq1  CCATATATATTTACTATATTTATAGTCTTATGAACTATATATTCAGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATATTTACTATATTTATAGTCTTATGAACTATATATTCAGCATG  882

seq1  ACTATATAAATCTTACTTCCAAATATCAAGAGAATTAATTAATTTATATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAAATCTTACTTCCAAATATCAAGAGAATTAATTAATTTATATC  932

seq1  ATACAAATATTGGTTTAAGTAATATGTGGCTTAAAAATAGTAAGATTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATATTGGTTTAAGTAATATGTGGCTTAAAAATAGTAAGATTTCT  982

seq1  TTTTTCCTCCAGTTTTCTCAGTTTCTTCATAAAATTCATATTAATACCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCAGTTTTCTCAGTTTCTTCATAAAATTCATATTAATACCTA  1032

seq1  GAATTTAATTGCCTTATAAGCTTATTAATATATTTTTCATAATGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATTGCCTTATAAGCTTATTAATATATTTTTCATAATGAATTC  1081

seq1: chr14_111636088_111637195
seq2: B6Ng01-054L11.g_66_1166

seq1  GAATTCAGGATATGATCCCAGAAATCCTCTTTATCACATTTTTGCCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATATGATCCCAGAAATCCTCTTTATCACATTTTTGCCTCAT  50

seq1  TTTTTGAGACAAGTTCCCCCAAACATGCCCAGAGCTTACCAGAGCAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAAGTTCCCCCAAACATGCCCAGAGCTTACCAGAGCAGCTA  100

seq1  GGCTCACAAGCCTTTTTCCTATGGGAAAGCTGTCTCTGCATTCTAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAAGCCTTTTTCCTATGGGAAAGCTGTCTCTGCATTCTAAGGCT  150

seq1  GAGATTACAGGCAGCAATCTCCTTTACCTAGCCTTATGTTAGGTTAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAGGCAGCAATCTCCTTTACCTAGCCTTATGTTAGGTTAAGGT  200

seq1  AGCCAAAGAGTGACCTCTTGCTTGTGTCACAAGTGTTTCAATTTTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGAGTGACCTCTTGCTTGTGTCACAAGTGTTTCAATTTTGTGTC  250

seq1  TATATCTCTACATACTTTTTTTTGTCATTTTAATACGTCTTTTAATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTACATACTTTTTTTTGTCATTTTAATACGTCTTTTAATACAT  300

seq1  TTAATTTTAAAACTGTATTTTATTTTGAAACATAAATTACTAATCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAAACTGTATTTTATTTTGAAACATAAATTACTAATCACCTC  350

seq1  TTAAGTTTGGGATAATGTTTTTCAAAGGAGCTTGATAATCATTATAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGGGATAATGTTTTTCAAAGGAGCTTGATAATCATTATAATGA  400

seq1  ATTTTCCTTTGAGGTATGACATCATTGCTTTTTAAAATTAATTGAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTGAGGTATGACATCATTGCTTTTTAAAATTAATTGAAGAGG  450

seq1  GAGAGCATGGCCTTTTGAGTTTTCAGTCATTTACCAGTAAAACAGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATGGCCTTTTGAGTTTTCAGTCATTTACCAGTAAAACAGAACAA  500

seq1  AACATTAACATTCATGAGGCCATTTGAAACTAGCTCATAGTCTCATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAACATTCATGAGGCCATTTGAAACTAGCTCATAGTCTCATAATT  550

seq1  TAGCGCTTTTTCTTACTATCCTAAATTTATGCTAATTATGTTTTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCTTTTTCTTACTATCCTAAATTTATGCTAATTATGTTTTCTTTAA  600

seq1  TGAACACAAATCACTATACTCATAACTTATATTTCTATTAAAATGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAAATCACTATACTCATAACTTATATTTCTATTAAAATGTTTTT  650

seq1  TAAAGAAAGTTGAAAACACCAGTATTGTTATAAATGCGTACATAAACGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGTTGAAAACACCAGTATTGTTATAAATGCGTACATAAACGTT  700

seq1  TACACACAGATACATATTCTATACATAAATGACATGACATAGGGACACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGATACATATTCTATACATAAATGACATGACATAGGGACACTT  750

seq1  TAATTCTTCTCTGCCTACATTACCTTAGGACAAATAATTGTGTACAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCTCTGCCTACATTACCTTAGGACAAATAATTGTGTACAGAAG  800

seq1  ACACACACACACACACACACACACACACACTCAGGTGCACACACATGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACTCAGGTGCACACACATGCAC  850

seq1  AATAAAAACGTGCAAAGTATTGTAAAACTACGATGTATTTTACATGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACGTGCAAAGTATTGTAAAACTACGATGTATTTTACATGTGAA  900

seq1  GAATTTCAGTCACATTGTCCACTCTCTTTCAAAAATAGATAATATTCTAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTTCAGTCACATTGTCCACTCTCTTTCAAAAATAGATAATA-TCTAT  949

seq1  CAATGGCAGTGCATATTCTTAGTCAACTGAGCAAATGCAATGCTGTCTTC  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAATGGCAGTGCATATTC-TAGTCAACTGAGCAAATGCAATGCTGTCTTC  998

seq1  CAGGGTATATTGATATCATGGTTCTAAACCTTGATATTTTTTGTTCCTTA  1050
      ||||  ||| |||||||||||| |||||||||||| ||||||||||||||
seq2  CAGGTAATA-TGATATCATGGTCCTAAACCTTGATTTTTTTTGTTCCTTA  1047

seq1  TATAAAAACAAG-AGCAAT-CTCAAAGCCAAATAACAGTTTAGTAGTATG  1098
       || |||||||| |||||| ||||||||| |||||||| ||| ||| |||
seq2  -AT-AAAACAAGAAGCAATCCTCAAAGCC-AATAACAG-TTAATAG-ATG  1092

seq1  CTTATTCTTT  1108
      | ||||||||
seq2  C-TATTCTTT  1101