BAC Information

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BAC

Clone NameB6Ng01-055H16
Chromosome14 (Build37)
Map Location 29,194,077 - 29,368,877
singlet/doubletdoublet
Overlap geneErc2, LOC100040206, Wnt5a, LOC100040218
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H16.bB6Ng01-055H16.g
ACCDH877914DH877915
length1,1711,096
definitionDH877914|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H16, 5' end.DH877915|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,367,324 - 29,368,877)(29,194,077 - 29,195,177)
sequence
gaattccaggagataaaggcagctgtgttgataggagtgacttggaatgg
agccctggatgaggaggtagtgcctggagacaaggggttattagaggtga
tggcaccaggggaaatatcccaccttatcacacaaaaatagtgtctttta
aaataccaaattaacaacttgcttcacagctgttttgcttactcagtaaa
caacgatcccaaaacccgccatgtaccacacaagcactgtgtgcacagca
agcggcccaggaccacaagcagaagagaagcaacgtggcaaaggacccag
agggaagcttcgggcaggcagcagagaccgcagccagtcctaatgcctcc
atgtatgggagagagctttggtctgcaatcctagcactcagagagcaagg
cacaaaagaccaaggggtcaaggtgagcctgcactacccattcagacact
gtctgaaaacacaaaaccaggaaatttctcagcctaaacctgtctttcct
tttaaaatgtaaacattctctttaatactttcattactaatgatttggaa
gacatatgaattcatgaagtataaactaaggtatatctaaccagactagt
caagtatagctactactagtgttttggtattttaccacagctgtaagtct
ttctcaatttagtttcctcctttccttcttttggtaaatatttgcaacct
actgggtagtggtggtgcatgcctttaatcacagcacttggtggacagag
gcaaataagatcgatgtgagttcaaggccaacccagtctacagagccagt
tccaggacagccaggctacacagagaaatctagcctcaaaagaacccaac
aataataaataataataatatcattattatcaataatacctgcaaccctg
aagcaatatgattttaaattagtcattttcttttcatcataaaagtattc
ataatttattttatgtttgctttagaaaaggttggaatacattccagtat
aaaataaaatcactcacaacttcaacagcaggtcaataccaccttataat
tttaagtaactttctagaatcactcaaccatataaatacccgctttacta
tagaggttatagtaattatgattggataatcaggaaaagggtccactttt
aagttttatataatttattat
gaattcagtgtcctgagatcttacatcccgtatggatccgggcattagag
aaaataggggcactgccgagctgggcaaaatgcaagtcaagggaggtctt
cccagctccaacagctgccttaactctaagaagagacaactttgacaaaa
gcagaggaccaaaaagttacaaggatgtttagtttgtgataaaaatcatt
ttgcagattaaagtctttcttcctgcccataaaatggtatgttctttaaa
taactaagaaactggccgcatttaactgtgttgcgaggagtgggggcaag
attgttgcccatagccatgccgcgttaaatctgcccttatcctattcaca
actgtgtcccagctgtaggtcccgatagctctcatcctttctctccggta
ttttagacctggccagttttctaaatgtgctgtctgcatagatggattca
cggcagctgttttatagagccaagttctcctgtctttggtctccattttc
tcattctctctggggcaaggatgactaccgagcaccagtgctttcttctt
cccacatgcaagtacagtgaataagagtgagacttctttccaagaccctc
agcaaggctccatgggttctatcagcttggaatcatgtgctgaggctaga
gaatgtaagaggcaatgggggctgtcactgtgacctaggtatgtcatagc
cctgagctggaatgaaacatctggtagatgtgttcctgcagagggtagtt
ggggtgaaacagttaaaaagaaagaatatggtgcctagaataataaatag
agcttaaaacactcgcacgcacacatacacacacattcacgggctttgct
gctagaaatattgagtttccagctcaaaagactaccataggtctctcccc
agcactggaagtcggccggctgcttaactcagacattgttatgagcttct
tcacctctcttctcagcacacgtaggatcttctgtcatggagggataaaa
aatcaatttatctacttatcttagactattgaaggactgtgcaaatacac
atagtgattgtgccatagaacaaccattccattcagtcctgcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29367324_29368877
seq2: B6Ng01-055H16.b_45_1215 (reverse)

seq1  ATAATAAATTATAAATAACACCTCCCATTCATAAACCTTTAGCATCCATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGGATGAAATCATTTAATGTCCTCTCATGTATGCTCTCTAAGCATAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCATAACTGTAGAAGAATTGTCACTGAGAAGAGCTTTTAGAAATTTCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATTGAATGTGACAGGTTCAAAGCCCTAACAAGGTGGCGTTGGAAAGATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCAGAGGTCAAGGGCAAGTGTACTGTTTGGAAGAATGGAAGCTGAGTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAGCGCTCATGTTAGACAGCTTCTAACTGTAACTCCGGTGCCAGGGAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAATGCCCCCTTCTGGCTTCCATGGTCACATGCATAATCCAAACCAGA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCATCCTCAGCCCAACACACACTAATAAATAATAATAAAACTTTAAAA  400
                              |||||||| || |||||||||  |||
seq2  -----------------------ATAATAAATTAT-ATAAAACTT--AAA  24

seq1  AGTGGACACTATTTTCTTGATTATTTCAATCATAATTACTATAACCTCTA  450
      ||||||| |  ||||| |||||| | ||||||||||||||||||||||||
seq2  AGTGGACCC--TTTTCCTGATTA-TCCAATCATAATTACTATAACCTCTA  71

seq1  TTAGTAAAGCGGTGTATTTATA-GTTTGAAGTGA-TCTAGGAAAGTTACT  498
       ||||||||||| ||||||||| | ||| ||||| |||| ||||||||||
seq2  -TAGTAAAGCGG-GTATTTATATGGTTG-AGTGATTCTA-GAAAGTTACT  117

seq1  TAAAAATAT-AGGTGGTATTGACCTGCTGTTGGAAAGTTGTGGGTGATTT  547
      ||||| ||| ||||||||||||||||||||||  |||||||| |||| ||
seq2  TAAAATTATAAGGTGGTATTGACCTGCTGTTG--AAGTTGTGAGTGA-TT  164

seq1  TTATTTTATACTGGAATGTATTTCAAACCTTTTCTAAAGCAAACATAAAA  597
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TTATTTTATACTGGAATGTA-TTCCAACCTTTTCTAAAGCAAACATAAAA  213

seq1  TAAA-TATGAATACTTTTATGATGAAAAG-AAATGACT-ATTTAAAATCA  644
      |||| |||||||||||||||||||||||| |||||||| |||||||||||
seq2  TAAATTATGAATACTTTTATGATGAAAAGAAAATGACTAATTTAAAATCA  263

seq1  TATTTGCTTCAGGGTTGCAGGTATTATTGATAATAATGATATTATTATTA  694
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTGCTTCAGGGTTGCAGGTATTATTGATAATAATGATATTATTATTA  312

seq1  TTTATTATTGTTGGGTTCTTTTGAGGCTAGATTTCTCTGTGTAGCCCTGG  744
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATTATTGTTGGGTTCTTTTGAGGCTAGATTTCTCTGTGTAG-CCTGG  361

seq1  CTGTCCTGGAACTGGCTCTGTAGACTGGGTTGGCCTTGAACTCACATCGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTGGCTCTGTAGACTGGGTTGGCCTTGAACTCACATCGA  411

seq1  TCTTATTTGCCTCTGTCCACCAAGTGCTGTGATTAAAGGCATGCACCACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGCCTCTGTCCACCAAGTGCTGTGATTAAAGGCATGCACCACC  461

seq1  ACTACCCAGTAGGTTGCAAATATTTACCAAAAGAAGGAAAGGAGGAAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCAGTAGGTTGCAAATATTTACCAAAAGAAGGAAAGGAGGAAACT  511

seq1  AAATTGAGAAAGACTTACAGCTGTGGTAAAATACCAAAACACTAGTAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGAAAGACTTACAGCTGTGGTAAAATACCAAAACACTAGTAGTA  561

seq1  GCTATACTTGACTAGTCTGGTTAGATATACCTTAGTTTATACTTCATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTTGACTAGTCTGGTTAGATATACCTTAGTTTATACTTCATGAA  611

seq1  TTCATATGTCTTCCAAATCATTAGTAATGAAAGTATTAAAGAGAATGTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTCTTCCAAATCATTAGTAATGAAAGTATTAAAGAGAATGTTT  661

seq1  ACATTTTAAAAGGAAAGACAGGTTTAGGCTGAGAAATTTCCTGGTTTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAAAGGAAAGACAGGTTTAGGCTGAGAAATTTCCTGGTTTTGT  711

seq1  GTTTTCAGACAGTGTCTGAATGGGTAGTGCAGGCTCACCTTGACCCCTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGACAGTGTCTGAATGGGTAGTGCAGGCTCACCTTGACCCCTTG  761

seq1  GTCTTTTGTGCCTTGCTCTCTGAGTGCTAGGATTGCAGACCAAAGCTCTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTGCCTTGCTCTCTGAGTGCTAGGATTGCAGACCAAAGCTCTC  811

seq1  TCCCATACATGGAGGCATTAGGACTGGCTGCGGTCTCTGCTGCCTGCCCG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATACATGGAGGCATTAGGACTGGCTGCGGTCTCTGCTGCCTGCCCG  861

seq1  AAGCTTCCCTCTGGGTCCTTTGCCACGTTGCTTCTCTTCTGCTTGTGGTC  1294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCCTCTGGGTCCTTTGCCACGTTGCTTCTCTTCTGCTTGTGGTC  911

seq1  CTGGGCCGCTTGCTGTGCACACAGTGCTTGTGTGGTACATGGCGGGTTTT  1344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCGCTTGCTGTGCACACAGTGCTTGTGTGGTACATGGCGGGTTTT  961

seq1  GGGATCGTTGTTTACTGAGTAAGCAAAACAGCTGTGAAGCAAGTTGTTAA  1394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGTTGTTTACTGAGTAAGCAAAACAGCTGTGAAGCAAGTTGTTAA  1011

seq1  TTTGGTATTTTAAAAGACACTATTTTTGTGTGATAAGGTGGGATATTTCC  1444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTTTAAAAGACACTATTTTTGTGTGATAAGGTGGGATATTTCC  1061

seq1  CCTGGTGCCATCACCTCTAATAACCCCTTGTCTCCAGGCACTACCTCCTC  1494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCCATCACCTCTAATAACCCCTTGTCTCCAGGCACTACCTCCTC  1111

seq1  ATCCAGGGCTCCATTCCAAGTCACTCCTATCAACACAGCTGCCTTTATCT  1544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCTCCATTCCAAGTCACTCCTATCAACACAGCTGCCTTTATCT  1161

seq1  CCTGGAATTC  1554
      ||||||||||
seq2  CCTGGAATTC  1171

seq1: chr14_29194077_29195177
seq2: B6Ng01-055H16.g_70_1165

seq1  GAATTCAGTGTCCTGAGATCTTACATCCCGTATGGATCCGGGCATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCCTGAGATCTTACATCCCGTATGGATCCGGGCATTAGAG  50

seq1  AAAATAGGGGCACTGCCGAGCTGGGCAAAATGCAAGTCAAGGGAGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGGGCACTGCCGAGCTGGGCAAAATGCAAGTCAAGGGAGGTCTT  100

seq1  CCCAGCTCCAACAGCTGCCTTAACTCTAAGAAGAGACAACTTTGACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCAACAGCTGCCTTAACTCTAAGAAGAGACAACTTTGACAAAA  150

seq1  GCAGAGGACCAAAAAGTTACAAGGATGTTTAGTTTGTGATAAAAATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACCAAAAAGTTACAAGGATGTTTAGTTTGTGATAAAAATCATT  200

seq1  TTGCAGATTAAAGTCTTTCTTCCTGCCCATAAAATGGTATGTTCTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTAAAGTCTTTCTTCCTGCCCATAAAATGGTATGTTCTTTAAA  250

seq1  TAACTAAGAAACTGGCCGCATTTAACTGTGTTGCGAGGAGTGGGGGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGAAACTGGCCGCATTTAACTGTGTTGCGAGGAGTGGGGGCAAG  300

seq1  ATTGTTGCCCATAGCCATGCCGCGTTAAATCTGCCCTTATCCTATTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCCCATAGCCATGCCGCGTTAAATCTGCCCTTATCCTATTCACA  350

seq1  ACTGTGTCCCAGCTGTAGGTCCCGATAGCTCTCATCCTTTCTCTCCGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCCAGCTGTAGGTCCCGATAGCTCTCATCCTTTCTCTCCGGTA  400

seq1  TTTTAGACCTGGCCAGTTTTCTAAATGTGCTGTCTGCATAGATGGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACCTGGCCAGTTTTCTAAATGTGCTGTCTGCATAGATGGATTCA  450

seq1  CGGCAGCTGTTTTATAGAGCCAAGTTCTCCTGTCTTTGGTCTCCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCTGTTTTATAGAGCCAAGTTCTCCTGTCTTTGGTCTCCATTTTC  500

seq1  TCATTCTCTCTGGGGCAAGGATGACTACCGAGCACCAGTGCTTTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTCTGGGGCAAGGATGACTACCGAGCACCAGTGCTTTCTTCTT  550

seq1  CCCACATGCAAGTACAGTGAATAAGAGTGAGACTTCTTTCCAAGACCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCAAGTACAGTGAATAAGAGTGAGACTTCTTTCCAAGACCCTC  600

seq1  AGCAAGGCTCCATGGGTTCTATCAGCTTGGAATCATGTGCTGAGGCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTCCATGGGTTCTATCAGCTTGGAATCATGTGCTGAGGCTAGA  650

seq1  GAATGTAAGAGGCAAT-GGGGCTGTCACTGTGACCTAGGTATGTCATAGC  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATGTAAGAGGCAATGGGGGCTGTCACTGTGACCTAGGTATGTCATAGC  700

seq1  CCTGAGCTGGAATGAAACATCTGGTAGATGTGTTCCTGCAGAGGGTAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTGGAATGAAACATCTGGTAGATGTGTTCCTGCAGAGGGTAGTT  750

seq1  GGGGTGAAACAGTTAAAAAGAAAGAATATGGTGCCTAGAATAATAAATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAACAGTTAAAAAGAAAGAATATGGTGCCTAGAATAATAAATAG  800

seq1  AGCTTAAAACACTCGCACGCACACATACACACACATTCACGGTCTTTGCT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTTAAAACACTCGCACGCACACATACACACACATTCACGGGCTTTGCT  850

seq1  GCTAGAAAATATGGAGTTTCCAGCTCAAAAGACTTACCATAGGTCTCTCC  899
      ||||| |||||| |||||||||||||||||||| ||||||||||||||||
seq2  GCTAG-AAATATTGAGTTTCCAGCTCAAAAGAC-TACCATAGGTCTCTCC  898

seq1  CCAGCACTGG-AGTCGGCCGGCTGCCTAACTCAGACATTGTTATGAGCCT  948
      |||||||||| |||||||||||||| |||||||||||||||||||||| |
seq2  CCAGCACTGGAAGTCGGCCGGCTGCTTAACTCAGACATTGTTATGAGCTT  948

seq1  CTTCACCTCCCTTCTCAGCCACACGTAGAATCTCCTGTCATGGAGGGATA  998
      ||||||||| |||||||| ||||||||| |||| ||||||||||||||| 
seq2  CTTCACCTCTCTTCTCAG-CACACGTAGGATCTTCTGTCATGGAGGGAT-  996

seq1  AAAAAATCAA-TTATCTAC-TATCTTAGACTATTGGAAGGACTGTGCAAA  1046
      |||||||||| |||||||| |||||||||||||| |||||||||||||||
seq2  AAAAAATCAATTTATCTACTTATCTTAGACTATT-GAAGGACTGTGCAAA  1045

seq1  TACACATAGTGATTGTGCCATTAGAACAAACCAATTCCATCCAGTCTCTG  1096
      |||||||||||||||||||| ||||||||  | ||||||| ||||| |||
seq2  TACACATAGTGATTGTGCCA-TAGAACAA--CCATTCCATTCAGTC-CTG  1091

seq1  CAGTT  1101
      |||||
seq2  CAGTT  1096