BAC Information

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BAC

Clone NameB6Ng01-055H21
Chromosome14 (Build37)
Map Location 41,555,429 - 41,692,326
singlet/doubletdoublet
Overlap geneSh2d4b
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H21.bB6Ng01-055H21.g
ACCDH877922DH877923
length605899
definitionDH877922|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H21, 5' end.DH877923|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,555,429 - 41,556,033)(41,691,751 - 41,692,326)
sequence
gaattcttttagagtactaaccatattcaaaacatagggagagctaaatc
cacctttcttccttgcagctccatctctccctgaacatccctcttcctct
tcccctcctctagatatgacgtcattgaattctccagggttttcagttta
ccatttcagcatttattccaaaagattgctgtttttataatttactcaag
tttgactactacctggagttcctgttaaaaatagagattgctgaagatga
tttggaatttgggctccaggaaagatattctagagattcttatttgtggg
ctttttgaaaagttttacagaggtgattcagagtatctgaatgttttaga
gcagggtataatataaatactgccacacttctgggagactggtgtttctg
ggaaagccagaacaataaagactataacataaagacataaagactctgta
aagagagtccaatgcaaggttcctaggatgtatctctaatgcttgaatag
aaaagtaagaagcaaaggccctcacatccatctccctcattccccatatg
gccaaagatgagagaaacagcataaacatgtggcatggggttgggggtgg
gggga
gaattccagtgcagccattgttacttctatagagagatcctgtctccaaa
accaaacacaataacaatgaacaaacaaacaaaacacttgcttgtggcta
gagagatgactcagtgctcgcagctctttctgaggaccagggtttggttt
ccagcatccgtatcatgccaatcacagccacctatatctcccagctacac
acaacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacatacacacacacacacacacacatacacacacacaca
cacatacacacacacatacacacacacacacatacacacacacacacaca
cacacatacacacacacacacacacacacacacacacacacacacacaca
cacacacacaccaaaataaaacagaggtaaaatcttgtggaaaaaaacct
ttagatcatttatttgaagtaattcagacttactttagaagaattgcaag
ctcggtgaatttctataacattcccacccaacatcccttaatggtaacat
ctttacacaatgaatggcttttaatataaaaatctcagtggccttattgg
tgtggtttagatttcatgtagtaactaacctttaggaatctactactagc
tggacatggtggcacatgcttataacctagcaccgaagagagttgaggca
ggaggagtatcatacaatcaaaaccactggggctataaaatgagtccggg
gaaagcctagcctacatagcaagactttatctctaaacaacaacaaacaa
acaaatgaagtatccattatttatctgagactttatacagtatttatgac
tacgtgggaaaaagtgaggtcttctcactcttcatttttccaagtacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41555429_41556033
seq2: B6Ng01-055H21.b_38_642

seq1  GAATTCTTTTAGAGTACTAACCATATTCAAAACATAGGGAGAGCTAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGAGTACTAACCATATTCAAAACATAGGGAGAGCTAAATC  50

seq1  CACCTTTCTTCCTTGCAGCTCCATCTCTCCCTGAACATCCCTCTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTTCCTTGCAGCTCCATCTCTCCCTGAACATCCCTCTTCCTCT  100

seq1  TCCCCTCCTCTAGATATGACGTCATTGAATTCTCCAGGGTTTTCAGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTCTAGATATGACGTCATTGAATTCTCCAGGGTTTTCAGTTTA  150

seq1  CCATTTCAGCATTTATTCCAAAAGATTGCTGTTTTTATAATTTACTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCAGCATTTATTCCAAAAGATTGCTGTTTTTATAATTTACTCAAG  200

seq1  TTTGACTACTACCTGGAGTTCCTGTTAAAAATAGAGATTGCTGAAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACTACCTGGAGTTCCTGTTAAAAATAGAGATTGCTGAAGATGA  250

seq1  TTTGGAATTTGGGCTCCAGGAAAGATATTCTAGAGATTCTTATTTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTGGGCTCCAGGAAAGATATTCTAGAGATTCTTATTTGTGGG  300

seq1  CTTTTTGAAAAGTTTTACAGAGGTGATTCAGAGTATCTGAATGTTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAAAAGTTTTACAGAGGTGATTCAGAGTATCTGAATGTTTTAGA  350

seq1  GCAGGGTATAATATAAATACTGCCACACTTCTGGGAGACTGGTGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTATAATATAAATACTGCCACACTTCTGGGAGACTGGTGTTTCTG  400

seq1  GGAAAGCCAGAACAATAAAGACTATAACATAAAGACATAAAGACTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCAGAACAATAAAGACTATAACATAAAGACATAAAGACTCTGTA  450

seq1  AAGAGAGTCCAATGCAAGGTTCCTAGGATGTATCTCTAATGCTTGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTCCAATGCAAGGTTCCTAGGATGTATCTCTAATGCTTGAATAG  500

seq1  AAAAGTAAGAAGCAAAGGCCCTCACATCCATCTCCCTCATTCCCCATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGAAGCAAAGGCCCTCACATCCATCTCCCTCATTCCCCATATG  550

seq1  GCCAAAGATGAGAGAAACAGCATAAACATGTGGCATGGGGTTGGGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGATGAGAGAAACAGCATAAACATGTGGCATGGGGTTGGGGGTGG  600

seq1  GGGGA  605
      |||||
seq2  GGGGA  605

seq1: chr14_41691751_41692326
seq2: B6Ng01-055H21.g_69_644 (reverse)

seq1  TATTAAAAGCCATTCATTGTGTAAAGATGTTACCATTAAGGGATGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGCCATTCATTGTGTAAAGATGTTACCATTAAGGGATGTTGGG  50

seq1  TGGGAATGTTATAGAAATTCACCGAGCTTGCAATTCTTCTAAAGTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGTTATAGAAATTCACCGAGCTTGCAATTCTTCTAAAGTAAGTC  100

seq1  TGAATTACTTCAAATAAATGATCTAAAGGTTTTTTTCCACAAGATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACTTCAAATAAATGATCTAAAGGTTTTTTTCCACAAGATTTTAC  150

seq1  CTCTGTTTTATTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTATTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATGTGTG  250

seq1  TGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGTGTGTATGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGTGTGTATGTGTGTGTG  300

seq1  TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  350

seq1  TGTGTGTGTGTGTGTGTGTGTGTTGTGTGTAGCTGGGAGATATAGGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTGTGTGTAGCTGGGAGATATAGGTGGC  400

seq1  TGTGATTGGCATGATACGGATGCTGGAAACCAAACCCTGGTCCTCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGGCATGATACGGATGCTGGAAACCAAACCCTGGTCCTCAGAAA  450

seq1  GAGCTGCGAGCACTGAGTCATCTCTCTAGCCACAAGCAAGTGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCGAGCACTGAGTCATCTCTCTAGCCACAAGCAAGTGTTTTGTTT  500

seq1  GTTTGTTCATTGTTATTGTGTTTGGTTTTGGAGACAGGATCTCTCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCATTGTTATTGTGTTTGGTTTTGGAGACAGGATCTCTCTATAG  550

seq1  AAGTAACAATGGCTGCACTGGAATTC  576
      ||||||||||||||||||||||||||
seq2  AAGTAACAATGGCTGCACTGGAATTC  576