BAC Information

Click to search

BAC

Clone NameB6Ng01-057E02
Chromosome14 (Build37)
Map Location 25,828,037 - 25,972,251
singlet/doubletdoublet
Overlap geneLOC100039411
Upstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057E02.bB6Ng01-057E02.g
ACCDH879180DH879181
length758889
definitionDH879180|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E02, 5' end.DH879181|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,828,037 - 25,828,631)(25,971,361 - 25,972,251)
sequence
gaattccactccctggtgactatgttttccatatatgagcctatgggtgc
catcttattcaaatcaccacagtgtccatataaagaatcagcaaggagcc
attcgcccatctttaaaatttttgacccataattgctcctgtctaaagga
aatgcaggaacaaaaatggagctgaaactgaaggaaaggccatccagata
cctgcccaatttaggatccatcccatgctcaggcaccaaaccctgacacc
attactgatgccatgttgtacttgcagacaggagctagcatggctgtcct
ctgagaggctctaccatcagctgactgagacagatgctgatacttagagc
caaccattggactgaggtcagggacccctatggaagagttaggggaagga
ctgaaggagctgaagaggattgcaaccccgtaggaagaacaacactatca
actaacccagacccctcaaagctcccagagacgaagccaccaaccaaaga
gcattcatgggctggtctatgcctcctctacatttgtagcagaggattgc
cttgtctggcctcagtgggaaaggacgtgcttaatcctgtagaaacttga
ggccccagggaagggggatgctagtggggtgaggtgggagtgctttgaat
catttccctctgtatttaaggcctcccctcccctcccaaccccacccccc
gccactggagaactaaccaccagaggcttcactccagctgtctgtctccc
tctacaaa
gaattcaggcattgtgctatacagacttagagatacttactctgatgaaa
caccagactgagcgccgtaagagtggaagggggatgctgatcatttcctt
tatcatggcagccaggacacacagagagagactgcctgggctccacgctg
gttttcctctccttttccctttcattctatccaggactcccagcctctaa
catggtgctgcttgtattcagagcagatttctttctcttctctgtagttg
actgtgtctggaaaaccctcacagacatacccaggggtgtgctttcctga
tttcccaggtcattctctattcaatcaagttacaatcaggatcggcagtc
acgggtagatttattttagttataatgcttttgcacagttagttgggtat
ggtgggcacatgattgctacgtgtactgggagatcagagcatccctgtgg
cttattgtgttgggacatgtgctttaatgctgtgctgtgcaaaggcagag
tgttaactctgagcactgtcagtagtcttcattgctgaaaaatacatgaa
gaatcgtgaagacagggtgcctggattaacttaggaaggagccttggttt
gggttccatgcatcgagctaatcaccactgcagggcaatgttgtgctctg
acgcatccattcccagatctgggtctagggccagctgcacctgataccag
aactgggtgttagcaggtttccccatgaatgtctagggctacttaagaaa
gggaatgcttgctgagtttcagaaagcagtctccagaagagcttctggat
tagaggatgcctgccctataacagtaactgcatacatctatgactttaaa
atctggcatctgtggcatgtctattgacatgcctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25828037_25828631
seq2: B6Ng01-057E02.b_44_637

seq1  GAATTCCACTCCCTGGTGACTATGTTTTCAAATATATGAGCCTATGGGTG  50
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCCACTCCCTGGTGACTATGTTTTC-CATATATGAGCCTATGGGTG  49

seq1  CCATCTTATTCAAATCACCACAGTGTCCATATAAAGAATCAGCAAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTATTCAAATCACCACAGTGTCCATATAAAGAATCAGCAAGGAGC  99

seq1  CATTCGCCCATCTTTAAAATTTTTGACCCAGAATTGCTCCTGTCTAAAGG  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTCGCCCATCTTTAAAATTTTTGACCCATAATTGCTCCTGTCTAAAGG  149

seq1  AAATGCAGGAACAAAAATGGAGCTGAAACTGAAGGAAAGGCCATCCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGAACAAAAATGGAGCTGAAACTGAAGGAAAGGCCATCCAGAT  199

seq1  ACCTGCCCAATTTAGGATCCATCCCATGCTCAGGCACCAAACCCTGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCAATTTAGGATCCATCCCATGCTCAGGCACCAAACCCTGACAC  249

seq1  CATTACTGATGCCATGTTGTACTTGCAGACAGGAGCTAGCATGGCTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGATGCCATGTTGTACTTGCAGACAGGAGCTAGCATGGCTGTCC  299

seq1  TCTGAGAGGCTCTACCATCAGCTGACTGAGACAGATGCTGATACTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGCTCTACCATCAGCTGACTGAGACAGATGCTGATACTTAGAG  349

seq1  CCAACCATTGGACTGAGGTCAGGGACCCCTATGGAAGAGTTAGGGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATTGGACTGAGGTCAGGGACCCCTATGGAAGAGTTAGGGGAAGG  399

seq1  ACTGAAGGAGCTGAAGAGGATTGCAACCCCGTAGGAAGAACAACACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGAGCTGAAGAGGATTGCAACCCCGTAGGAAGAACAACACTATC  449

seq1  AACTAACCCAGACCCCTCAAAGCTCCCAGAGACGAAGCCACCAACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCCAGACCCCTCAAAGCTCCCAGAGACGAAGCCACCAACCAAAG  499

seq1  AGCATTCATGGGCTGGTCTATGCCTCCTCTACATTTGTAGCAGAGGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATGGGCTGGTCTATGCCTCCTCTACATTTGTAGCAGAGGATTG  549

seq1  CCTTGTCTGGCCTCAGTGGGAAAGGACGTGCTTAATCCTGTAGAA  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTGGCCTCAGTGGGAAAGGACGTGCTTAATCCTGTAGAA  594

seq1: chr14_25971361_25972251
seq2: B6Ng01-057E02.g_66_954 (reverse)

seq1  AAAATAGGCATGTAAATAAACATGCCACAGATGCCAGATTTTTAAAGACA  50
      ||||||||||||| |||| ||||||||||||||||||| |||||||| ||
seq2  AAAATAGGCATGTCAATAGACATGCCACAGATGCCAGA-TTTTAAAGTCA  49

seq1  AAGATGTATGAAGTTACTGTTCTAGGGCAGGCATCCTCTAATCCAGAAGC  100
       ||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TAGATGTATGCAGTTACTGTTATAGGGCAGGCATCCTCTAATCCAGAAGC  99

seq1  TCTTCTGGAGACTGCTTTCTGAAACTCAGCAAGCATTCCCTTTCTTTTTG  150
      |||||||||||||||||||||||||||||||||||||||||||| ||  |
seq2  TCTTCTGGAGACTGCTTTCTGAAACTCAGCAAGCATTCCCTTTC-TTAAG  148

seq1  TAGCCCTAGGCATTCCTGGGGAAACCTGCTAACACCCAGTTCTGGTATCA  200
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TAGCCCTAGACATTCATGGGGAAACCTGCTAACACCCAGTTCTGGTATCA  198

seq1  GGTGCAGCTGGCCCTAGACCCAGATCTGGGAATGGATGCGTCAGAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCTGGCCCTAGACCCAGATCTGGGAATGGATGCGTCAGAGCACA  248

seq1  ACATTGCCCTGCAGTGGTGATTAGCTCGATGCATGGAACCCAAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCCTGCAGTGGTGATTAGCTCGATGCATGGAACCCAAACCAAGG  298

seq1  CTCCTTCCTAAGCTAATCCAGGCACCCTGTCTTCACGATTCTTCATGTAT  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTAAGTTAATCCAGGCACCCTGTCTTCACGATTCTTCATGTAT  348

seq1  TTTACAGCAATGAAGACTACTGACAGTGCTCAGAGTTAACACTCTGCCTT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCAATGAAGACTACTGACAGTGCTCAGAGTTAACACTCTGCCTT  398

seq1  TGCACAGCACAGCATTAAAGCACATGTCCCAACACAATAAGCCACAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCACAGCATTAAAGCACATGTCCCAACACAATAAGCCACAGGGA  448

seq1  TGCTCTGATCTCCCAGTACACGTAGCAATCATGTGCCCACCATACCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGATCTCCCAGTACACGTAGCAATCATGTGCCCACCATACCCAAC  498

seq1  TAACTGTGCAAAAGCATTATAACTAAAATAAATCTACCCGTGACTGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGCAAAAGCATTATAACTAAAATAAATCTACCCGTGACTGCCGA  548

seq1  TCCTGATTGTAACTTGATTGAATAGAGAATGACCTGGGAAATCAGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTGTAACTTGATTGAATAGAGAATGACCTGGGAAATCAGGAAAG  598

seq1  CACACCCCTGGGTATGTCTGTGAGGGTTTTCCAGACACAGTCAACTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTGGGTATGTCTGTGAGGGTTTTCCAGACACAGTCAACTACAG  648

seq1  AGAAGAGAAAGAAATCTGCTCTGAATACAAGCAGCACCATGTTAGAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAAGAAATCTGCTCTGAATACAAGCAGCACCATGTTAGAGGCT  698

seq1  GGGAGTCCTGGATAGAATGAAAGGGAAAAGGAGAGGAAAACCAGCGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCTGGATAGAATGAAAGGGAAAAGGAGAGGAAAACCAGCGTGGA  748

seq1  GCCCAGGCAGTCTCTCTCTGTGTGTCCTGGCTGCCATGATAAAGGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCAGTCTCTCTCTGTGTGTCCTGGCTGCCATGATAAAGGAAATG  798

seq1  ATCAGCATCCCCCTTCCACTCTTACGGCGCTCAGTCTGGTGTTTCATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCCCCCTTCCACTCTTACGGCGCTCAGTCTGGTGTTTCATCAG  848

seq1  AGTAAGTATCTCTAAGTCTGTATAGCACAATGCCTGAATTC  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATCTCTAAGTCTGTATAGCACAATGCCTGAATTC  889