BAC Information

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BAC

Clone NameB6Ng01-057L17
Chromosome14 (Build37)
Map Location 81,004,434 - 81,123,211
singlet/doubletdoublet
Overlap genenone
Upstream geneSugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L17.bB6Ng01-057L17.g
ACCDH879514DH879515
length1,1521,120
definitionDH879514|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L17, 5' end.DH879515|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,004,434 - 81,005,606)(81,122,073 - 81,123,211)
sequence
gaattcaaaagtaagggtagtccaaccggatgtagaaaatagcatccctc
ttttctgtgtattgaatccaagatacaaagttgttagtttttaacataat
agtgccaatatgatttttgcttctggttgactttactttaaacattttat
atattcattatctatttcttgtttcagaaatggaggtacccaaggaacaa
atactaaactgtgaaaccaaagccagtctggttggcccactttgtgactg
tcactttcttcatgagcctgtggctcagttcccagcctgcagatgcacag
catcagatcgataaggttttccttctcactcatttcacacaatgtccagc
gttgattctcatagccagttttacaagtgggtctagggctgaccatgtaa
cctaggctggctggccattgagtcccagggatgcaacgattacaggggct
gtcaccatgtgtgggtccttttacttgggctctagggattacattcgggg
gttcatccttgagaggtaaccttaccagctgagctctatctccaactcag
ctgaggaatctttaattactttctttactattgtaaatttcatatataaa
tacaatagaatatggtcacatctgctttggcttcctcctccatactttca
catcctcctcaacatgttctttctcaacttagtgtactacaattacaatt
acaattacaattacaattacaattacaattacaattacaattacaattac
aattactattactattactattactattactattattattattattacct
acaaggtgccgtcagtgatgcctatgcatgtgtgggtgctgagaccatcc
tattgagcatggaaatcttatcactggtcacatcctcaaacaaaccgatt
ttctttccccgagaaactatcagtgccattatctctcagttagactggtc
tggagatcatttacctcattcatgtgggactttgcacgtttgtcttgtgc
agatacttgacagatgtggagttcgtgagtgtgaagtctggaatccagaa
gaaaaccactcttttcgtccccccggccttaattattctctacctccctt
tcaggtttcaggctgggaagattggctcatgcgtctcatcccagcatcta
at
gaattctcttctttgaatattccatgtgaaataagccaaacctctccaaa
gctatagtgtgctgcacgccaatgccactgctcatcaaagctccaattat
tcttacaaaaattagcattttcatttgaagttaaatgcaaaatctgcaat
ggtaataaaggaaataacaccagggttctaatttattagctgaaaatttg
ttttgaatttatatatggattctgcttcaagatttttatttcaaaacatt
ttgttagcgtattagtttatgttgagcactcatttagctgcatttatata
ctctgcctattttaattaactcattcatgcattctgatgcttttgctaat
tttagatgatggatccatcattgtttgtttataaaggctgattggaaaca
aggcattcattatgtcgtgcctgataatctgctcacttcattatctcggg
gcagtttctgaacctgcatctttgttgtcatcaagtctttataaatacta
tgtccctattgattaatgctcattggcagtatagtctgcactggttattc
cccaattattgtctcttgtgctgttttctaaggtgttaccctaatacaca
gaaaattatgccttcaagaaaatctatatctctctcatttctttaataaa
tctttgaatcacagatatggtatttggctaaattaacaacgaggcttctg
ttccccaaattgcattatattcatgactacagcagcttctttaataaatt
gcctttattttatgccttgatgaaatctaggttttgtttttaaagcagac
tcggctctttatctcatggaaattccactgtgcagaataaatccttatgc
atggtttatgaacactaaaaacaggaaaaagttactttctaaaatagatc
attcagtttactatcattccagaaaatgtactgagaggcagtgagaggaa
taattgatctgtggctttttgtagtcctctttcctctaggtgttgcaata
aatgggaaaataataacttgaataccttttaactatttgcataaatgagt
tggcctagaaaaactctatctaaagattcctaagcagcatcagccaagac
tggtgggtctttgtgaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_81004434_81005606
seq2: B6Ng01-057L17.b_48_1199

seq1  GAATTCAAAAGTAAGGGTAGTCCAACCGGATGTAGAAAATAGCATCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTAAGGGTAGTCCAACCGGATGTAGAAAATAGCATCCCTC  50

seq1  TTTTCTGTGTATTGAATCCAAGATACAAAGTTGTTAGTTTTTAACATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTATTGAATCCAAGATACAAAGTTGTTAGTTTTTAACATAAT  100

seq1  AGTGCCAATATGATTTTTGCTTCTGGTTGACTTTACTTTAAACATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAATATGATTTTTGCTTCTGGTTGACTTTACTTTAAACATTTTAT  150

seq1  ATATTCATTATCTATTTCTTGTTTCAGAAATGGAGGTACCCAAGGAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTATCTATTTCTTGTTTCAGAAATGGAGGTACCCAAGGAACAA  200

seq1  ATACTAAACTGTGAAACCAAAGCCAGTCTGGTTGGCCCACTTTGTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAACTGTGAAACCAAAGCCAGTCTGGTTGGCCCACTTTGTGACTG  250

seq1  TCACTTTCTTCATGAGCCTGTGGCTCAGTTCCCAGCCTGCAGATGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTTCATGAGCCTGTGGCTCAGTTCCCAGCCTGCAGATGCACAG  300

seq1  CATCAGATCGATAAGGTTTTCCTTCTCACTCATTTCACACAATGTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCGATAAGGTTTTCCTTCTCACTCATTTCACACAATGTCCAGC  350

seq1  GTTGATTCTCATAGCCAGTTTTACAAGTGGGTCTAGGGCTGACCATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCTCATAGCCAGTTTTACAAGTGGGTCTAGGGCTGACCATGTAA  400

seq1  CCTAGGCTGGCTGGCCATTGAGTCCCAGGGATGCAACGATTACAGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTGGCTGGCCATTGAGTCCCAGGGATGCAACGATTACAGGGGCT  450

seq1  GTCACCATGTGTGGGTCCTTTTACTTGGGCTCTAGGGATTACATTCGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGTGTGGGTCCTTTTACTTGGGCTCTAGGGATTACATTCGGGG  500

seq1  GTTCATCCTTGAGAGGTAACCTTACCAGCTGAGCTCTATCTCCAACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCTTGAGAGGTAACCTTACCAGCTGAGCTCTATCTCCAACTCAG  550

seq1  CTGAGGAATCTTTAATTACTTTCTTTACTATTGTAAATTTCATATATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATCTTTAATTACTTTCTTTACTATTGTAAATTTCATATATAAA  600

seq1  TACAATAGAATATGGTCACATCTGCTTTGGCTTCCTCCTCCATACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGAATATGGTCACATCTGCTTTGGCTTCCTCCTCCATACTTTCA  650

seq1  CATCCTCCTCAACATGTTCTTTCTCAACTTAGTGTACTACAATTACAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTCAACATGTTCTTTCTCAACTTAGTGTACTACAATTACAATT  700

seq1  ACAATTACAATTACAATTACAATTACAATTACAATTACAATTACAATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACAATTACAATTACAATTACAATTACAATTACAATTACAATTAC  750

seq1  AATTACTATTACTATTACTATTACTATTACTATTATTATTATTATTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATTACTATTACTATTACTATTACTATTATTATTATTATTACCT  800

seq1  ACAAGGTGCCGTCAGTGATGCCTATGCATGTGTGGGTGCTGAGACCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGCCGTCAGTGATGCCTATGCATGTGTGGGTGCTGAGACCATCC  850

seq1  TATTGAGCATGGAAATCTTATCACTGGTCACATCCTCAAACAAAACCGAT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTGAGCATGGAAATCTTATCACTGGTCACATCCTCAAAC-AAACCGAT  899

seq1  TTTCTTTCCCCGAGAAACTATCAGGTGCCATTATCTCCTCAGTTAGACTG  950
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  TTTCTTTCCCCGAGAAACTATCA-GTGCCATTATCT-CTCAGTTAGACTG  947

seq1  GATCTGGAGATCATTTACCTCATTCATGGTGGGACTTTGGCACGTTTGAT  1000
      | ||||||||||||||||||||||||| |||||||||| ||||||||| |
seq2  G-TCTGGAGATCATTTACCTCATTCAT-GTGGGACTTT-GCACGTTTG-T  993

seq1  CTTGTGCAGATAACTGGACAGATGT-GAGTTCGTGAGTGTGATAGTCGTG  1049
      ||||||||||| ||| ||||||||| |||||||||||||||| |||| ||
seq2  CTTGTGCAGAT-ACTTGACAGATGTGGAGTTCGTGAGTGTGA-AGTC-TG  1040

seq1  ACATCCAGAGAGAACA-CACTCCTTTCTGTCACCCCTGCTCTTACATATT  1098
        ||||||| |||| | ||||| |||| ||| |||| || ||||  ||||
seq2  GAATCCAGA-AGAAAACCACTCTTTTC-GTCCCCCCGGC-CTTAATTATT  1087

seq1  CTCTACCCTCCCTTCCATGTTTCCCAAGCCTTTGGCAGCGATTGGGCTAC  1148
      ||||| |||||||| || |||||   || |  ||| |  |||| ||||  
seq2  CTCTA-CCTCCCTTTCAGGTTTC---AGGC--TGGGA-AGATT-GGCTCA  1129

seq1  TGCTGCTCAATCCCCAGCATCTAAT  1173
      |||  ||||   |||||||||||||
seq2  TGCGTCTCA--TCCCAGCATCTAAT  1152

seq1: chr14_81122073_81123211
seq2: B6Ng01-057L17.g_68_1187 (reverse)

seq1  GCATTTCCACAAAGGACCCCACAGTCTTGGGCTGATGGCTGCTTAGGGAA  50
      |||||  |||||| |||||  ||||||| ||||||| |||||||| ||||
seq2  GCATT--CACAAA-GACCCACCAGTCTT-GGCTGAT-GCTGCTTA-GGAA  44

seq1  TCTCTAGATAG-GTTTCTCTAGGCCATACTTCAATTTATGCATATGATTA  99
      ||| ||||||| |||| ||||||||| |||   ||||||||| ||  |||
seq2  TCTTTAGATAGAGTTTTTCTAGGCCA-ACT--CATTTATGCAAATAGTTA  91

seq1  AAGGGGTATTACAAGTTATTATTTTCCCATTTTATTTGCAAACACCTAGA  149
      ||  |||||| |||||||||||||||||||||   |||| ||||||||||
seq2  AA-AGGTATT-CAAGTTATTATTTTCCCATTT--ATTGC-AACACCTAGA  136

seq1  GGAAAGAGGGACTACAAAAAGCCACAGATCAATTATTCCTCTCACCTGCC  199
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GGAAAGA-GGACTACAAAAAGCCACAGATCAATTATTCCTCTCA-CTGCC  184

seq1  TCTCCAGTACATTTTCTGGAATGATAGTAAACTGAATGATCTATTTTAGA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCT-CAGTACATTTTCTGGAATGATAGTAAACTGAATGATCTATTTTAGA  233

seq1  AAGTTAACTTTTTTCCTGTTTTTAAGTGTTCATAAACCATGCATAAGGAT  299
      ||| |||| |||||||||||||| ||||||||||||||||||||||||||
seq2  AAG-TAAC-TTTTTCCTGTTTTT-AGTGTTCATAAACCATGCATAAGGAT  280

seq1  TTATTCTGCACAGTGGAATTTCCATGAGATAAAGAGCCGAGTCTGCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCACAGTGGAATTTCCATGAGATAAAGAGCCGAGTCTGCTTTA  330

seq1  AAAACAAAACCTAGATTTCATCAAGGCATAAAATAAAGGCAATTTATTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACCTAGATTTCATCAAGGCATAAAATAAAGGCAATTTATTAA  380

seq1  AGAAGCTGCTGTAGTCATGAATATAATGCAATTTGGGGAACAGAAGCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGCTGTAGTCATGAATATAATGCAATTTGGGGAACAGAAGCCTC  430

seq1  GTTGTTAATTTAGCCAAATACCATATCTGTGATTCAAAGATTTATTAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATTTAGCCAAATACCATATCTGTGATTCAAAGATTTATTAAAG  480

seq1  AAATGAGAGAGATATAGATTTTCTTGAAGGCATAATTTTCTGTGTATTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAGAGATATAGATTTTCTTGAAGGCATAATTTTCTGTGTATTAG  530

seq1  GGTAACACCTTAGAAAACAGCACAAGAGACAATAATTGGGGAATAACCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACCTTAGAAAACAGCACAAGAGACAATAATTGGGGAATAACCAG  580

seq1  TGCAGACTATACTGCCAATGAGCATTAATCAATAGGGACATAGTATTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTATACTGCCAATGAGCATTAATCAATAGGGACATAGTATTTAT  630

seq1  AAAGACTTGATGACAACAAAGATGCAGGTTCAGAAACTGCCCCGAGATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTGATGACAACAAAGATGCAGGTTCAGAAACTGCCCCGAGATAA  680

seq1  TGAAGTGAGCAGATTATCAGGCACGACATAATGAATGCCTTGTTTCCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGCAGATTATCAGGCACGACATAATGAATGCCTTGTTTCCAAT  730

seq1  CAGCCTTTATAAACAAACAATGATGGATCCATCATCTAAAATTAGCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTATAAACAAACAATGATGGATCCATCATCTAAAATTAGCAAAA  780

seq1  GCATCAGAATGCATGAATGAGTTAATTAAAATAGGCAGAGTATATAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAATGCATGAATGAGTTAATTAAAATAGGCAGAGTATATAAATG  830

seq1  CAGCTAAATGAGTGCTCAACATAAACTAATACGCTAACAAAATGTTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAATGAGTGCTCAACATAAACTAATACGCTAACAAAATGTTTTGA  880

seq1  AATAAAAATCTTGAAGCAGAATCCATATATAAATTCAAAACAAATTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATCTTGAAGCAGAATCCATATATAAATTCAAAACAAATTTTCA  930

seq1  GCTAATAAATTAGAACCCTGGTGTTATTTCCTTTATTACCATTGCAGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAAATTAGAACCCTGGTGTTATTTCCTTTATTACCATTGCAGATT  980

seq1  TTGCATTTAACTTCAAATGAAAATGCTAATTTTTGTAAGAATAATTGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTAACTTCAAATGAAAATGCTAATTTTTGTAAGAATAATTGGAG  1030

seq1  CTTTGATGAGCAGTGGCATTGGCGTGCAGCACACTATAGCTTTGGAGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGAGCAGTGGCATTGGCGTGCAGCACACTATAGCTTTGGAGAGG  1080

seq1  TTTGGCTTATTTCACATGGAATATTCAAAGAAGAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTATTTCACATGGAATATTCAAAGAAGAGAATTC  1120