BAC Information

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BAC

Clone NameB6Ng01-057L20
Chromosome14 (Build37)
Map Location 32,354,604 - 32,514,422
singlet/doubletdoublet
Overlap geneColq, Hacl1, Btd, Ankrd28
Upstream geneTkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L20.bB6Ng01-057L20.g
ACCDH879520DH879521
length9901,073
definitionDH879520|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L20, 5' end.DH879521|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,513,426 - 32,514,422)(32,354,604 - 32,355,686)
sequence
gaattccatagaggaaatttttaatgaatttaaaaaacagactatttcac
ctcttgtaatgcagcggtcctggagaagggacatctgagcctctctgtgc
gcggcacacctgcatcacgttagttactttgggacctctaccttttttgg
ctggaggaattctattgtcatttattttaatctttgaactttaaaaacaa
gaatcaaaattttaaaaagtttgaagactcttgttatgaaacattgtcga
aagctggttgtgaattctatacaaactgggattgtaaatgttttatgtaa
aagaaaatacttaaaaatgtacctgcttcctctcctgcgtcctcacagca
ctggaaggttcttgaatgcatcctttcctttgttgttgttgttgttgttg
tagtcgtttgttgttttaagacagggctctctatgtgtagccctggctgt
actagagtttgctttgtagaccaggctggcctcgatctcacagagattca
cctgtctcagcttcctaagtgctgggattaaaggtgtgcaccaccactgc
ctggcttcagatgttttctttataaaaatcaacatcaaaccatttggctt
ccttctcagaagcattggagtttgctttagatgatgactcataacataaa
cagaatcaggtcatttggaaggcatttctgtactgggcaagatttaaaat
acttcaggctttaggtcctcctgagatctagagtagcgggtgtgcagctt
cttactgtcagagcttgcctgccaaattgaagactgcctttcaggtaaca
gagaagaggctgacagtaggctaattttaaattacacttttctgtggttc
ttttattgtaactgtcactttcccagtaacaatgattttacattgggggg
agggtcttactaaactgggtaaagttcattcattgcacaaatggtaccca
ttccatcttaccctttttggattgggaactggaactttat
gaattccagagaccagtagctggtgaggaccagggccaagctgacctgtc
agcttagcaacaggatgaacctgtccccctccaactcactcagcagttaa
gagcgtttactggctttccagaggatccaagctcagttcccagcactata
tcaggtggctcacatggcctgtaactccaggcagttgtgaatgatcacaa
aattttaaccccgggaggatctaagacctcccaccttcacaggcacacat
acatgaagacacacacacatacacacatactcgggcacacacacacacac
ttaaaaatgaaacctttaagaaagcattttccttaagtccatgttagggt
caatgattccacatggcaatggaggaaccattaacctggttttcacacac
acacacacacacacacacacacccctgggctgtttagaggggcccaggga
atatcttgtttagccaggagaaagcatcaacataaaaaatatgaatttta
aaaaagaggtctttggaaggaagtgtggctcttctctttaccagctggaa
gcagctagggatttcttgatctaattcctctcctaagacctaattacagt
tatcacatcagcccggtcccaaagcagcctgccacgaaagggggaagacg
gcgctctctatgccaagcctggtaaatggcgcacaagccagagaacctgt
caaatttaattttatagtgaccaatgagtctttgatgattactgttgcag
ggaatgagaatctagacaaaacatcttaaggtactttcttctcttttgaa
gtttgccttaatttgtttatatgattcatctatttttaaatgtagcatcc
tacctagggtagcaggaactgagtttctgacaggctaaggtaaggataag
ttatagtgacttgcataagacccatggctgtataccaccggataaaaatg
ctttacttagaaagtaacacttaaagtgaatgggtttaaaattaaagaca
ttgaagaaacgtttgtttgcattttgaggcattcagtatgacttaggtag
aaataaccatttcagtgtcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_32513426_32514422
seq2: B6Ng01-057L20.b_47_1036 (reverse)

seq1  ATAAAGTTCCAGTTTCACAATACAAAAAGGGTAAGATGGAATTGGGTATC  50
      |||||||||||| ||| |||| ||||||||||||||||||| |||||| |
seq2  ATAAAGTTCCAG-TTCCCAATCCAAAAAGGGTAAGATGGAA-TGGGTACC  48

seq1  ATTTTGTTGCAATGTATGGAACTTTACCCAGCTCTAGTAAGACCCCTCCC  100
      ||||   ||||||| || ||||||||||||| | |||||||| |||||||
seq2  ATTT--GTGCAATGAAT-GAACTTTACCCAG-TTTAGTAAGA-CCCTCCC  93

seq1  CCCAATGTAAAATCATTGTTACTGGGAAAGTGACAGTTACAATAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTAAAATCATTGTTACTGGGAAAGTGACAGTTACAATAAAAGAA  143

seq1  CCACAGAAAAGTGTAATTTAAAATTAGCCTACTGTCAGCCTCTTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAAAGTGTAATTTAAAATTAGCCTACTGTCAGCCTCTTCTCTGT  193

seq1  TACCTGAAAGGCAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAAGGCAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAG  243

seq1  CTGCACACCCGCTACTCTAGATCTCAGGAGGACCTAAAGCCTGAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACCCGCTACTCTAGATCTCAGGAGGACCTAAAGCCTGAAGTATT  293

seq1  TTAAATCTTGCCCAGTACAGAAATGCCTTCCAAATGACCTGATTCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTGCCCAGTACAGAAATGCCTTCCAAATGACCTGATTCTGTTT  343

seq1  ATGTTATGAGTCATCATCTAAAGCAAACTCCAATGCTTCTGAGAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGAGTCATCATCTAAAGCAAACTCCAATGCTTCTGAGAAGGAAG  393

seq1  CCAAATGGTTTGATGTTGATTTTTATAAAGAAAACATCTGAAGCCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGTTTGATGTTGATTTTTATAAAGAAAACATCTGAAGCCAGGCA  443

seq1  GTGGTGGTGCACACCTTTAATCCCAGCACTTAGGAAGCTGAGACAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCACACCTTTAATCCCAGCACTTAGGAAGCTGAGACAGGTGA  493

seq1  ATCTCTGTGAGATCGAGGCCAGCCTGGTCTACAAAGCAAACTCTAGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGAGATCGAGGCCAGCCTGGTCTACAAAGCAAACTCTAGTACA  543

seq1  GCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTACAA  593

seq1  CAACAACAACAACAACAAAGGAAAGGATGCATTCAAGAACCTTCCAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAACAAAGGAAAGGATGCATTCAAGAACCTTCCAGTGC  643

seq1  TGTGAGGACGCAGGAGAGGAAGCAGGTACATTTTTAAGTATTTTCTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGACGCAGGAGAGGAAGCAGGTACATTTTTAAGTATTTTCTTTTA  693

seq1  CATAAAACATTTACAATCCCAGTTTGTATAGAATTCACAACCAGCTTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATTTACAATCCCAGTTTGTATAGAATTCACAACCAGCTTTCG  743

seq1  ACAATGTTTCATAACAAGAGTCTTCAAACTTTTTAAAATTTTGATTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTCATAACAAGAGTCTTCAAACTTTTTAAAATTTTGATTCTTG  793

seq1  TTTTTAAAGTTCAAAGATTAAAATAAATGACAATAGAATTCCTCCAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTTCAAAGATTAAAATAAATGACAATAGAATTCCTCCAGCCA  843

seq1  AAAAAGGTAGAGGTCCCAAAGTAACTAACGTGATGCAGGTGTGCCGCGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTAGAGGTCCCAAAGTAACTAACGTGATGCAGGTGTGCCGCGCA  893

seq1  CAGAGAGGCTCAGATGTCCCTTCTCCAGGACCGCTGCATTACAAGAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGCTCAGATGTCCCTTCTCCAGGACCGCTGCATTACAAGAGGTG  943

seq1  AAATAGTCTGTTTTTTAAATTCATTAAAAATTTCCTCTATGGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTGTTTTTTAAATTCATTAAAAATTTCCTCTATGGAATTC  990

seq1: chr14_32354604_32355686
seq2: B6Ng01-057L20.g_70_1142

seq1  GAATTCCAGAGACCAGTAGCTGGTGAGGACCAGGGCCAAGCTGACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACCAGTAGCTGGTGAGGACCAGGGCCAAGCTGACCTGTC  50

seq1  AGCTTAGCAACAGGATGAACCTGTCCCCCTCCAACTCACTCAGCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCAACAGGATGAACCTGTCCCCCTCCAACTCACTCAGCAGTTAA  100

seq1  GAGCGTTTACTGGCTTTCCAGAGGATCCAAGCTCAGTTCCCAGCACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTTTACTGGCTTTCCAGAGGATCCAAGCTCAGTTCCCAGCACTATA  150

seq1  TCAGGTGGCTCACATGGCCTGTAACTCCAGGCAGTTGTGAATGATCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCTCACATGGCCTGTAACTCCAGGCAGTTGTGAATGATCACAA  200

seq1  AATTTTAACCCCGGGAGGATCTAAGACCTCCCACCTTCACAGGCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACCCCGGGAGGATCTAAGACCTCCCACCTTCACAGGCACACAT  250

seq1  ACATGAAGACACACACACATACACACATACTCGGGCACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGACACACACACATACACACATACTCGGGCACACACACACACAC  300

seq1  TTAAAAATGAAACCTTTAAGAAAGCATTTTCCTTAAGTCCATGTTAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGAAACCTTTAAGAAAGCATTTTCCTTAAGTCCATGTTAGGGT  350

seq1  CAATGATTCCACATGGCAATGGAGGAACCATTAACCTGGTTTTCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTCCACATGGCAATGGAGGAACCATTAACCTGGTTTTCACACAC  400

seq1  ACACACACACACACACACACACCCCTGGGCTGTTTAGAGGGGCCCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCCCTGGGCTGTTTAGAGGGGCCCAGGGA  450

seq1  ATATCTTGTTTAGCCAGGAGAAAGCATCAACATAAAAAATATGAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGTTTAGCCAGGAGAAAGCATCAACATAAAAAATATGAATTTTA  500

seq1  AAAAAGAGGTCTTTGGAAGGAAGTGTGGCTCTTCTCTTTACCAGCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGTCTTTGGAAGGAAGTGTGGCTCTTCTCTTTACCAGCTGGAA  550

seq1  GCAGCTAGGGATTTCTTGATCTAATTCCTCTCCTAAGACCTAATTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGGGATTTCTTGATCTAATTCCTCTCCTAAGACCTAATTACAGT  600

seq1  TATCACATCAGCCCGGTCCCAAAGCAGCCTGCCACGAAAGGGGGAAGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATCAGCCCGGTCCCAAAGCAGCCTGCCACGAAAGGGGGAAGACG  650

seq1  GCGCTCTCTATGCCAAGCCTGGTAAATGGCGCACAAGCCAGAGAACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCTCTATGCCAAGCCTGGTAAATGGCGCACAAGCCAGAGAACCTGT  700

seq1  CAAATTTAATTTTATAGTGACCAATGAGTCTTTGATGATTACTGTTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAATTTTATAGTGACCAATGAGTCTTTGATGATTACTGTTGCAG  750

seq1  GGAATGAGAATCTAGACAAAACATCTTAAGGTACTTTCTTCTCTTTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGAATCTAGACAAAACATCTTAAGGTACTTTCTTCTCTTTTGAA  800

seq1  GTTTGCCTTAATTTGTTTATATGATTCATCTATTTTTAAAATGTAGCATC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTTGCCTTAATTTGTTTATATGATTCATCTATTTTT-AAATGTAGCATC  849

seq1  CTACCTAGGGTAGCAGGAACTGAGTTTCTGACAGGCTAAGGTAAGGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGGGTAGCAGGAACTGAGTTTCTGACAGGCTAAGGTAAGGATAA  899

seq1  GTTATAGTGACTTGCATAAAGACCCATGGCTGTATACCACCGGATAAAAA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTATAGTGACTTGCAT-AAGACCCATGGCTGTATACCACCGGATAAAAA  948

seq1  TGCTTTACTTTAGAAAGTAACACTTTAAAGTGAATGGGTTTAAAAATTAT  1000
      |||||||| |||||||||||||| ||||||||||||||||| ||||||| 
seq2  TGCTTTAC-TTAGAAAGTAACAC-TTAAAGTGAATGGGTTT-AAAATTAA  995

seq1  AGACATTGAGAAAACGTTTGTTTGCATATTTGAAGCATTCCAGTTTATGA  1050
      |||||||||  |||||||||||||||| ||||| ||||| |||  |||||
seq2  AGACATTGAAGAAACGTTTGTTTGCAT-TTTGAGGCATT-CAG--TATGA  1041

seq1  CCTAGGTAGAGATAACAATTTCCAGTGTCAAAG  1083
      | |||||||| ||||| |||| |||||||||||
seq2  CTTAGGTAGAAATAACCATTT-CAGTGTCAAAG  1073