BAC Information

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BAC

Clone NameB6Ng01-058E16
Chromosome14 (Build37)
Map Location 77,863,828 - 78,027,165
singlet/doubletdoublet
Overlap geneD230005D02Rik, EG629678
Upstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171
Downstream geneGm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E16.bB6Ng01-058E16.g
ACCDH879909DH879910
length927695
definitionDH879909|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E16, 5' end.DH879910|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,026,236 - 78,027,165)(77,863,828 - 77,864,520)
sequence
gaattccttggaggaggccctctcttgttactcggcttcttattgaacac
aagagaaagtgctgtggagagcttctataaagggctttgttaacacaggg
ctgatgatccggcatcaattagaatattccttaggagcctaaatgttaca
tggcaggggctgaaagaaagagtctaatttaaatgttaatttctatttga
aaagcccaaggacctagcaactttcacactcccccccctcaaaaaattta
aaaaaaaaatcaactatagatgtatttttcatctgtggtaattttaccct
acctctcatttcaacctcgctgttctttgtcagcttcgtcctttaccttc
ccctgtttgctcaggatttaatgacctgaaaggacagctcattcattcaa
ccccgcggagttacatatggagcctctgatacacagttaggaaagcggaa
tgccacagaaaagaggggaagtagtctgggggactgcctcgtacttctga
ggagcagtggatgtgagagaaatgccatcattctctgtacaccccgccta
tactgccgtccctgtcgctactggagtgcaggtgacatggactctgtgaa
ggagagaggcactagtgggtcagagatggaaaggtggaggggcaggacga
aagctcaggaggtaaagaaagggcttgccttgtgaacatgaggccctgag
tttttatctctgagaacctatgttaaaacaagcaaacagagaggtatttc
actgcatgcctgtgacccctacacatggggagacatagatggttaaatcc
ttggacctctctggctagccaaccagcccggcatactgggtgaggtttat
gccagtggagggtggaggtgaggggcaaacaaaccaaatggatgatgcct
gaggaccactgcaaggttgttctccgg
gaattccatctaactcagttccacccagccctccaggacctcctgaaacc
ttgcatgcctgtggcaagttttctagccagctcaggcctttggccacttc
ctctgtaagcttgcctttgtggtcagttgttccaatcattttgtttttaa
aaatagtgatgtcggtagctggtaatggttggtgaccagaatgcagacac
gacaggggagaaacatgagtgacatgtagaatcacaaggaccagccacag
gtggtagaaacgagtttttccaccgaggcatattaagaaataacaattgt
tagctgtaatgctaataatccaaaccaaactcactcctaccgctacacct
gggagggacacagaagcagactccaagtacaagtccacgtttttaaagaa
tctgaggtcacaagactcttgtcttgttttcttgtagtttttgaactcaa
aattcccctcacatgacccattcttggaccatgttccaatacatacatac
atacatacatacatacataccaataaatatagtttgtgtgttctgttttt
atgtatgaagtagatgttggcatgctgcattttttaaggcaaagctcata
aagaggattgttgttgttgttgttgttgttgttgttagaagggggctgtt
tgtagacctgtaattttgaatcttgtgtaatgtagcatattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78026236_78027165
seq2: B6Ng01-058E16.b_44_970 (reverse)

seq1  CCGGAGGACAACCTTGGCAGTTGGTCCTCAGGCATCATCCATTTTGGTTT  50
      |||||| |||||||| |||| |||||||||||||||||||| ||||||||
seq2  CCGGAGAACAACCTT-GCAG-TGGTCCTCAGGCATCATCCA-TTTGGTTT  47

seq1  GTTTGCCCCTCACCTCCACCCTCCACTGGCATAAACCTCACCCAGTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCCTCACCTCCACCCTCCACTGGCATAAACCTCACCCAGTATGC  97

seq1  CGGGCTGGTTGGCTAGCCAGAGAGGTCCAAGGATTTAACCATCTATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGGTTGGCTAGCCAGAGAGGTCCAAGGATTTAACCATCTATGTCT  147

seq1  CCCCATGTGTAGGGGTCACAGGCATGCAGTGAAATACCTCTCTGTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTGTAGGGGTCACAGGCATGCAGTGAAATACCTCTCTGTTTGCT  197

seq1  TGTTTTAACATAGGTTCTCAGAGATAAAAACTCAGGGCCTCATGTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAACATAGGTTCTCAGAGATAAAAACTCAGGGCCTCATGTTCACA  247

seq1  AGGCAAGCCCTTTCTTTACCTCCTGAGCTTTCGTCCTGCCCCTCCACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCCTTTCTTTACCTCCTGAGCTTTCGTCCTGCCCCTCCACCTT  297

seq1  TCCATCTCTGACCCACTAGTGCCTCTCTCCTTCACAGAGTCCATGTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTGACCCACTAGTGCCTCTCTCCTTCACAGAGTCCATGTCACC  347

seq1  TGCACTCCAGTAGCGACAGGGACGGCAGTATAGGCGGGGTGTACAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCAGTAGCGACAGGGACGGCAGTATAGGCGGGGTGTACAGAGAA  397

seq1  TGATGGCATTTCTCTCACATCCACTGCTCCTCAGAAGTACGAGGCAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCATTTCTCTCACATCCACTGCTCCTCAGAAGTACGAGGCAGTCC  447

seq1  CCCAGACTACTTCCCCTCTTTTCTGTGGCATTCCGCTTTCCTAACTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTACTTCCCCTCTTTTCTGTGGCATTCCGCTTTCCTAACTGTGT  497

seq1  ATCAGAGGCTCCATATGTAACTCCGCGGGGTTGAATGAATGAGCTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGCTCCATATGTAACTCCGCGGGGTTGAATGAATGAGCTGTCCT  547

seq1  TTCAGGTCATTAAATCCTGAGCAAACAGGGGAAGGTAAAGGACGAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCATTAAATCCTGAGCAAACAGGGGAAGGTAAAGGACGAAGCTG  597

seq1  ACAAAGAACAGCGAGGTTGAAATGAGAGGTAGGGTAAAATTACCACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACAGCGAGGTTGAAATGAGAGGTAGGGTAAAATTACCACAGAT  647

seq1  GAAAAATACATCTATAGTTGATTTTTTTTTTAAATTTTTTGAGGGGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACATCTATAGTTGATTTTTTTTTTAAATTTTTTGAGGGGGGGG  697

seq1  AGTGTGAAAGTTGCTAGGTCCTTGGGCTTTTCAAATAGAAATTAACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAGTTGCTAGGTCCTTGGGCTTTTCAAATAGAAATTAACATTT  747

seq1  AAATTAGACTCTTTCTTTCAGCCCCTGCCATGTAACATTTAGGCTCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGACTCTTTCTTTCAGCCCCTGCCATGTAACATTTAGGCTCCTAA  797

seq1  GGAATATTCTAATTGATGCCGGATCATCAGCCCTGTGTTAACAAAGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTCTAATTGATGCCGGATCATCAGCCCTGTGTTAACAAAGCCCT  847

seq1  TTATAGAAGCTCTCCACAGCACTTTCTCTTGTGTTCAATAAGAAGCCGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGCTCTCCACAGCACTTTCTCTTGTGTTCAATAAGAAGCCGAG  897

seq1  TAACAAGAGAGGGCCTCCTCCAAGGAATTC  930
      ||||||||||||||||||||||||||||||
seq2  TAACAAGAGAGGGCCTCCTCCAAGGAATTC  927

seq1: chr14_77863828_77864520
seq2: B6Ng01-058E16.g_68_762

seq1  GAATTCCATCTAACTCAGTTCCACCCAGCCCTCCAGGACCTCCTGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTAACTCAGTTCCACCCAGCCCTCCAGGACCTCCTGAAACC  50

seq1  TTGCATGCCTGTGGCAAGTTTTCTAGCCAGCTCAGGCCTTTGGCCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCCTGTGGCAAGTTTTCTAGCCAGCTCAGGCCTTTGGCCACTTC  100

seq1  CTCTGTAAGCTTGCCTTTGTGGTCAGTTGTTCCAATCATTTTGTTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAGCTTGCCTTTGTGGTCAGTTGTTCCAATCATTTTGTTTTTAA  150

seq1  AAATAGTGATGTCGGTAGCTGGTAATGGTTGGTGACCAGAATGCAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGATGTCGGTAGCTGGTAATGGTTGGTGACCAGAATGCAGACAC  200

seq1  GACAGGGGAGAAACATGAGTGACATGTAGAATCACAAGGACCAGCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGAGAAACATGAGTGACATGTAGAATCACAAGGACCAGCCACAG  250

seq1  GTGGTAGAAACGAGTTTTTCCACCGAGGCATATTAAGAAATAACAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAAACGAGTTTTTCCACCGAGGCATATTAAGAAATAACAATTGT  300

seq1  TAGCTGTAATGCTAATAATCCAAACCAAACTCACTCCTACCGCTACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAATGCTAATAATCCAAACCAAACTCACTCCTACCGCTACACCT  350

seq1  GGGAGGGACACAGAAGCAGACTCCAAGTACAAGTCCACGTTTTTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGACACAGAAGCAGACTCCAAGTACAAGTCCACGTTTTTAAAGAA  400

seq1  TCTGAGGTCACAAGACTCTTGTCTTGTTTTCTTGTAGTTTTTGAACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCACAAGACTCTTGTCTTGTTTTCTTGTAGTTTTTGAACTCAA  450

seq1  AATTCCCCTCACATGACCCATTCTTGGACCATGTTCCAATACATACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCTCACATGACCCATTCTTGGACCATGTTCCAATACATACATAC  500

seq1  ATACATACATACATACATACCAATAAATATAGTTTGTGTGTTCTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACCAATAAATATAGTTTGTGTGTTCTGTTTTT  550

seq1  ATGTATGAAGTAGATGTTGGCATGCTGCATTTTTTAAGGCAAAGCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAAGTAGATGTTGGCATGCTGCATTTTTTAAGGCAAAGCTCATA  600

seq1  AAGAGGATTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGAA-GGGGCTGTT  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAGGATTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGAAGGGGGCTGTT  650

seq1  TGTAGACCTGTAA-TTTGAATCTTGGTAAATGTAGCATATTCTTT  693
      ||||||||||||| |||||||||||   |||||||||||||||||
seq2  TGTAGACCTGTAATTTTGAATCTTGTGTAATGTAGCATATTCTTT  695