BAC Information

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BAC

Clone NameB6Ng01-059H01
Chromosome14 (Build37)
Map Location 110,838,596 - 110,966,321
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059H01.bB6Ng01-059H01.g
ACCDH880723DH880724
length1,1271,043
definitionDH880723|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H01, 5' end.DH880724|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,838,596 - 110,839,741)(110,965,265 - 110,966,321)
sequence
gaattctacacctttcatatctcctttaagaatacagataatgttcgtgt
tgctttatatccatgaatgaacttatatttttcaatagatctcggtatca
gaggaaactctagaattgattttatgcaacaagagaccctagggttgaat
ggagtttgtaggttgggaggccttggttttccaccattatatttggaaga
agaaggcacatgcctatatttgtgaaggacaaaactttatctaataggaa
gaaacaaatttatagctatgaaaactaaaataattatttatttgtataca
tttatgaaatattgtttttcactgatacctccagacacttaaaccatatt
tttctgaatacagagtcatttatttaataagcagagtgcagctgaagtac
tagaaaatatggaacatgattttcattattccaagtaaaggaaagtgtgt
ccaacctgtggtaggcatagaaactttggaagtattcagtaaagaacctg
tgataggagcaaaacatacctatccattttaatagtcagagtaaaaataa
gtatataaaatatgtctgtaatcaagagctcaggcccagcttccagccaa
ataaaagaatactatatgaaacatgataaaaatctattgattctagtgaa
gaatagtttaaatcaactttcagtcagagtggaaagtgactgtgtgtaag
cttcatgccatctcatttttagagatatgtggatgttaattgtcaaacaa
tgggatacaaagagtattatatgataacatcaagagagatggaagcttag
tgttatgaattcaaaggaagaaggcatctttatagttttaaagatcaaag
aagccactattaaaaacaggaaagaacccagatgcccctcaacagaggga
atggatacagaaaacgtggtacatttacacaatggagtactactcagcta
ttaaaagaatgaatttatgaaattctagccaaatggatggactggagggc
atcatcctgagtgagcacccatccaaaagactcacacaatatgtactcac
tgatagtggatattagcccagaactaaaatccagaaataagatacattgc
aaaccatgaactcagaagaacgaagac
gaattcttacagtatatgagaagataatcagctttttcctggtaggtctt
atcatacctgatgcacaacagaaggtccctctgcccattgctttgttcct
gtttcaaaataaacattaaacacaattaaatttattcatctgaaaaggat
gtatgttatgtgtgtattcttatataattatgatatatatatatacatat
atatatgtatatatatgtatatatatacatggaatggtacaataatattg
taatgataaaaatatatttcttaacagcccctaattaaattaaaaaatat
tttggaggagaagcatgagataatttgcccataagcatagctgacatttg
actttgtagtattggaaaaaatttaaagtatgaaatgatcaatagactat
gttgtgaagtaatgattaaaaactgaggacttcactggcaagtttgaaat
ggccaactgaaaagtagacagactgctacttcaatagtcttcattcagaa
ggcatcccgatgtgttgatgtaatagcctgaaaatggagtgacctgcctg
cctctattacaaagaatcctttgactctttgaaaggggattctttgggga
tcacataaacatggcacaacatgaaaaattgtgtccttaagtgtttttat
attttcttcgtaaacagtaactcaaataaatttggctgctaaggttaatg
tgtttgttaagaatattagggtttcacattatataatattttgctgtccc
tctgcactcaaataaaattatactttgtgacactctggcaaaaaaaaaat
cagtaagtcaaaactgagtaattactctgtctagactcaagtaaatacat
cgtaactcaaattttatgataaataatagagtacttgttgaagcatgggg
atcacttatctgactcatctttgcagaactcgatggttgacttgaatctt
ctgggacttcagattcaggaaagaaccaaatgaaagaaatagatagacta
catttccagaaaagcagtattaagtggagtagcaaaactacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110838596_110839741
seq2: B6Ng01-059H01.b_47_1173

seq1  GAATTCTACACCTTTCATATCTCCTTTAAGAATACAGATAATGTTCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACCTTTCATATCTCCTTTAAGAATACAGATAATGTTCGTGT  50

seq1  TGCTTTATATCCATGAATGAACTTATATTTTTCAATAGATCTCGGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATATCCATGAATGAACTTATATTTTTCAATAGATCTCGGTATCA  100

seq1  GAGGAAACTCTAGAATTGATTTTATGCAACAAGAGACCCTAGGGTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTCTAGAATTGATTTTATGCAACAAGAGACCCTAGGGTTGAAT  150

seq1  GGAGTTTGTAGGTTGGGAGGCCTTGGTTTTCCACCATTATATTTGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGTAGGTTGGGAGGCCTTGGTTTTCCACCATTATATTTGGAAGA  200

seq1  AGAAGGCACATGCCTATATTTGTGAAGGACAAAACTTTATCTAATAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCACATGCCTATATTTGTGAAGGACAAAACTTTATCTAATAGGAA  250

seq1  GAAACAAATTTATAGCTATGAAAACTAAAATAATTATTTATTTGTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTTATAGCTATGAAAACTAAAATAATTATTTATTTGTATACA  300

seq1  TTTATGAAATATTGTTTTTCACTGATACCTCCAGACACTTAAACCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAATATTGTTTTTCACTGATACCTCCAGACACTTAAACCATATT  350

seq1  TTTCTGAATACAGAGTCATTTATTTAATAAGCAGAGTGCAGCTGAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATACAGAGTCATTTATTTAATAAGCAGAGTGCAGCTGAAGTAC  400

seq1  TAGAAAATATGGAACATGATTTTCATTATTCCAAGTAAAGGAAAGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATGGAACATGATTTTCATTATTCCAAGTAAAGGAAAGTGTGT  450

seq1  CCAACCTGTGGTAGGCATAGAAACTTTGGAAGTATTCAGTAAAGAACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTGGTAGGCATAGAAACTTTGGAAGTATTCAGTAAAGAACCTG  500

seq1  TGATAGGAGCAAAACATACCTATCCATTTTAATAGTCAGAGTAAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAGCAAAACATACCTATCCATTTTAATAGTCAGAGTAAAAATAA  550

seq1  GTATATAAAATATGTCTGTAATCAAGAGCTCAGGCCCAGCTTCCAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAAATATGTCTGTAATCAAGAGCTCAGGCCCAGCTTCCAGCCAA  600

seq1  ATAAAAGAATACTATATGAAACATGATAAAAATCTATTGATTCTAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAATACTATATGAAACATGATAAAAATCTATTGATTCTAGTGAA  650

seq1  GAATAGTTTAAATCAACTTTCAGTCAGAGTGGAAAGTGACTGTGTGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTTAAATCAACTTTCAGTCAGAGTGGAAAGTGACTGTGTGTAAG  700

seq1  CTTCATGCCATCTCATTTTTAGAGATATGTGGATGTTAATTGTCAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCCATCTCATTTTTAGAGATATGTGGATGTTAATTGTCAAACAA  750

seq1  TGGGATACAAAGAGTATTATATGATAACATCAAGAGAGATGGAAGCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATACAAAGAGTATTATATGATAACATCAAGAGAGATGGAAGCTTAG  800

seq1  TGTTATGAATTCAAAGGAAGAAGGCATCTTTATAGTTTTAAAGATCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAATTCAAAGGAAGAAGGCATCTTTATAGTTTTAAAGATCAAAG  850

seq1  AAGCCACTATTAAAAACAGGAAAGAACCCAGATGCCCCTCAACAGA-GGA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCCACTATTAAAAACAGGAAAGAACCCAGATGCCCCTCAACAGAGGGA  900

seq1  ATGGATACAGAAAACGTGGTACATTTACACAATGGAGTACTACTCAGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGAAAACGTGGTACATTTACACAATGGAGTACTACTCAGCTA  950

seq1  TTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAG  999
      || |||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TT-AAAAGAATGAATTTATGAAATT-CTAGCCAAATGGATGGA-CTGGAG  997

seq1  GGCATCATCCTGAGTGAGGCAACCCAATCACAAAAGAACTCACACAATAT  1049
      ||||||||||||||||| |||  || ||| |||||| |||||||||||||
seq2  GGCATCATCCTGAGTGA-GCA--CCCATC-CAAAAG-ACTCACACAATAT  1042

seq1  GTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGAT  1099
      |||||||||||| |||||||||||||||||||   || |||   | ||| 
seq2  GTACTCACTGAT-AGTGGATATTAGCCCAGAA--CTAAAAT---CCAGAA  1086

seq1  ATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGAC  1146
      ||||||||||  |||||||   |||| ||||| ||||||||||||||
seq2  ATAAGATACA--TTGCAAA--CCATG-AACTC-AGAAGAACGAAGAC  1127

seq1: chr14_110965265_110966321
seq2: B6Ng01-059H01.g_68_1110 (reverse)

seq1  TGGTAAGTTTTGCTTAACT-CACTTAATACTGCTTTTCTTGGAAATTGTA  49
      |||| |||||||||  ||| |||||||||||||||||| |||||| ||||
seq2  TGGT-AGTTTTGCT--ACTCCACTTAATACTGCTTTTC-TGGAAA-TGTA  45

seq1  TGTCTATTCTTATTTTTCTTTCATTTGTTTCTTTTCCTGATATCTGGAAG  99
       |||||    | | ||||||||||||| ||| |||||||| |||| ||||
seq2  -GTCTA----TCTATTTCTTTCATTTGGTTC-TTTCCTGA-ATCT-GAAG  87

seq1  TCCCATGAAGATTCAAGTCAACCATTCGAGTTCTGGCAAAGATTGAGTCA  149
      ||||| |||||||||||||||||| ||||||||| ||||||| |||||||
seq2  TCCCA-GAAGATTCAAGTCAACCA-TCGAGTTCT-GCAAAGA-TGAGTCA  133

seq1  GATAAGTGAATCCCATGCTTCAAACAAGTACTCTATTATTTATTCATAAA  199
      |||||||||  |||||||||| |||||||||||||||||||| |||||||
seq2  GATAAGTGATCCCCATGCTTC-AACAAGTACTCTATTATTTA-TCATAAA  181

seq1  A-TTGGGTGACGATGTATTTACTTGAGTCTAGACAGAGTAATTACTCAGT  248
      | ||| || |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTTACGATGTATTTACTTGAGTCTAGACAGAGTAATTACTCAGT  231

seq1  TTTGACTTACTGATTTTTTTTTTGCCAGAGTGTCACAAAGTATAATTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTACTGATTTTTTTTTTGCCAGAGTGTCACAAAGTATAATTTTA  281

seq1  TTTGAGTGCAGAGGGACAGC-AAATATTATATAATGTGAAACCCTAATAT  347
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGAGTGCAGAGGGACAGCAAAATATTATATAATGTGAAACCCTAATAT  331

seq1  TCTTAACAAACACATTAACCTTAGCAGCC-AATTTATTTGAGTTACTGTT  396
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTAACAAACACATTAACCTTAGCAGCCAAATTTATTTGAGTTACTGTT  381

seq1  TACGAAGAAAATAT-AAAACACTTAAGGACACAATTTTTCATGTTGTGCC  445
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACGAAGAAAATATAAAAACACTTAAGGACACAATTTTTCATGTTGTGCC  431

seq1  ATGTTTATGTGATCCCCAAAGAATCCCCTTTCAAAGAGTCAAAGGATTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGTGATCCCCAAAGAATCCCCTTTCAAAGAGTCAAAGGATTCT  481

seq1  TTGTAATAGAGGCAGGCAGGTCACTCCATTTTCAGGCTATTACATCAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAGAGGCAGGCAGGTCACTCCATTTTCAGGCTATTACATCAACA  531

seq1  CATCGGGATGCCTTCTGAATGAAGACTATTGAAGTAGCAGTCTGTCTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGGATGCCTTCTGAATGAAGACTATTGAAGTAGCAGTCTGTCTACT  581

seq1  TTTCAGTTGGCCATTTCAAACTTGCCAGTGAAGTCCTCAGTTTTTAATCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGGCCATTTCAAACTTGCCAGTGAAGTCCTCAGTTTTTAATCA  631

seq1  TTACTTCACAACATAGTCTATTGATCATTTCATACTTTAAATTTTTTCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCACAACATAGTCTATTGATCATTTCATACTTTAAATTTTTTCCA  681

seq1  ATACTACAAAGTCAAATGTCAGCTATGCTTATGGGCAAATTATCTCATGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACAAAGTCAAATGTCAGCTATGCTTATGGGCAAATTATCTCATGC  731

seq1  TTCTCCTCCAAAATATTTTTTAATTTAATTAGGGGCTGTTAAGAAATATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCAAAATATTTTTTAATTTAATTAGGGGCTGTTAAGAAATATA  781

seq1  TTTTTATCATTACAATATTATTGTACCATTCCATGTATATATATACATAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATTACAATATTATTGTACCATTCCATGTATATATATACATAT  831

seq1  ATATACATATATATATGTATATATATATATCATAATTATATAAGAATACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATATATGTATATATATATATCATAATTATATAAGAATACA  881

seq1  CACATAACATACATCCTTTTCAGATGAATAAATTTAATTGTGTTTAATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACATACATCCTTTTCAGATGAATAAATTTAATTGTGTTTAATGT  931

seq1  TTATTTTGAAACAGGAACAAAGCAATGGGCAGAGGGACCTTCTGTTGTGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAAACAGGAACAAAGCAATGGGCAGAGGGACCTTCTGTTGTGC  981

seq1  ATCAGGTATGATAAGACCTACCAGGAAAAAGCTGATTATCTTCTCATATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTATGATAAGACCTACCAGGAAAAAGCTGATTATCTTCTCATATA  1031

seq1  CTGTAAGAATTC  1057
      ||||||||||||
seq2  CTGTAAGAATTC  1043