BAC Information

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BAC

Clone NameB6Ng01-059I16
Chromosome14 (Build37)
Map Location 43,399,135 - 43,445,668
singlet/doubletdoublet
Overlap geneLOC635209, 1700091H14Rik
Upstream geneLOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055
Downstream geneEG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059I16.bB6Ng01-059I16.g
ACCDH880792DH880793
length9601,100
definitionDH880792|Mus musculus domesticus DNA, BAC clone: B6Ng01-059I16, 5' end.DH880793|Mus musculus domesticus DNA, BAC clone: B6Ng01-059I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,399,135 - 43,400,110)(43,444,575 - 43,445,668)
sequence
gaattctttcactggtttttaaccttttcccctgttattttatttcggga
ttgtcgaattgactccttttttttgttttctggagatcgtgtgcagattt
tgaaatgataatcccactcaatcttatatgggatccctattattagtggt
cctgaaaatacttaagcagttactcaacatcctgtaggaagactaaacac
aaaagtaactacatataatgggggacaatttactccgaaagagagagcag
ggtttgtatagaagagcatatacccaataaggctcagaaaccagtggggc
tctgcagcctggaaatgggacaacaatgtatggttcggtgccattcctga
cgaacaaggatggaattcatcctcatccttagggaacaagccccctccaa
atgaaaattaaaattgtttccttcaactaccctccccagaacgcaaaaaa
acctgtcttaattatacaaggacacacaggttaggaagattagccaagat
cttctcaagtctcataatctctgtatcatttagaaattcgctctatttat
tactttaaaaatatgtgaaattaattattatctttatttatatttcaaat
gttttcccatttcctggtttctcatataaaaaacccctatcccctaccca
ctcccactgctcactgaccaacctactccaactacctggtcctgacattc
ccctacattaggacattgagccttcacaagactaaggacatcttctctca
ttgataaccaacatagccatcctctgctaaaatgcatctagagaaatggt
ctctccatatgtactcttgggcagtgctttagtccctagatcactgtggg
tacgggaggtggtatgctcctctatggggtgctaacccgccagatcctgg
gtccctcccttctctgcagtgtgtcccggtgatcgtccatggtttgatga
gagcatcctc
gaattctccaggtgcctcagaaccgccacctcgtggatggtggagagccg
aatgccctcctcactggtctgcactcccaaaatgcttgaagtcaggaagg
ggctgcgtgtcttcaggttgcaagccttgaacagctacctgtaggcaggg
acttctcccatctctgccatgcactcatactgctgatcagtgtgacttgg
gatgtccttctccttgctggctgcaagctgtcggagtggcaaattggaac
cggggtgcgcacttgctgccttacatgcctcatggactcccggagttgta
ctggccaccaggctagagggaccgatctcctctccttccagagcaaacca
ggagcagctgcagtgaaactccacctagccaagttgctgcaccttgctgg
tgctgcaggagagcgccaatccctcctcttccccctcctcagctattaca
aagtctgcccacaatctctgcacctaggaggaggagactggaggacaagg
agaaagtgtgatcagactgcccaggagacttccaccaggttcctccagct
cccctcctcctccactcttctcaccttggcttcctaatccggccaggttt
cttggagaaaaatcaagttacttttccccccagcagggcccatgcagtct
tagcgaggaaaaggttgttggggcccctcaggggatgagtgcagtgcaag
aagagagggtgcttgcccagcagcccagagtgtgcccagagcacagggga
ggggaggcgccgggtaggtcaatgtcatggctcaatatttatacctatat
tctccgcatcatagttaatatcagctgataaactgtatagaaatactgat
gggtggttgcatgcaacattactcatcatagcccagtcataaatctctgt
gttgaccctgtctctttgataggagacctattattttatgtattattttg
ctgttgaaatataaccacacataatgtgatcagattgacgctttactcct
cttccatcatcaatctgctccccccctttttctgaccactcgtgctcgat
gacaaaaagacgacccttttatctcgctgtgataaacggactctcctctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43399135_43400110
seq2: B6Ng01-059I16.b_42_1001

seq1  GAATTCATTCACTGGTTTTTAAGCTTTTCCCATGTTATTTTATTTCTGGA  50
      |||||| ||||||||||||||| |||||||| |||||||||||||| |||
seq2  GAATTCTTTCACTGGTTTTTAACCTTTTCCCCTGTTATTTTATTTCGGGA  50

seq1  TTATCAAATTGACTCCTTTTCTTTGTTTTCTGGAGATCATGTGCAGATTT  100
      || || |||||||||||||| ||||||||||||||||| |||||||||||
seq2  TTGTCGAATTGACTCCTTTTTTTTGTTTTCTGGAGATCGTGTGCAGATTT  100

seq1  TGAAATGATAATCCCACTCAATCTTATATAAAAGCACTAAGATTAGTGGT  150
      |||||||||||||||||||||||||||||   | | |||  |||||||||
seq2  TGAAATGATAATCCCACTCAATCTTATATGGGATCCCTATTATTAGTGGT  150

seq1  CCTGAAAATACTTAAGCAGTTACTCAACATCCTGTAGGAAGACAAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGAAAATACTTAAGCAGTTACTCAACATCCTGTAGGAAGACTAAACAC  200

seq1  AAAATTAAGTACATATAATGGGGGACAATTTACTCCAAAAGAGAGAGCAG  250
      |||| ||| ||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAGTAACTACATATAATGGGGGACAATTTACTCCGAAAGAGAGAGCAG  250

seq1  GGTTTGTAGAGAAGAGCAAATAGCCAATAAAGCTCAGAAACCAGTGGGGC  300
      |||||||| ||||||||| ||| ||||||| |||||||||||||||||||
seq2  GGTTTGTATAGAAGAGCATATACCCAATAAGGCTCAGAAACCAGTGGGGC  300

seq1  TCTGCAGCCTGGAAATGGGACAACAATGTATGGTTCAGTGCCATTCCTGA  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGCAGCCTGGAAATGGGACAACAATGTATGGTTCGGTGCCATTCCTGA  350

seq1  CAGACAAGGTCAGAATTCATCCTCATCGTTAGGGAACTAGCCACCTCCAG  400
      |  ||||||   ||||||||||||||| ||||||||| |||| |||||| 
seq2  CGAACAAGGATGGAATTCATCCTCATCCTTAGGGAACAAGCCCCCTCCAA  400

seq1  ATGAAAATTAAAATTGTTTCCTTCAACTACCCTCCCCAGCACACAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||| || |||| ||
seq2  ATGAAAATTAAAATTGTTTCCTTCAACTACCCTCCCCAGAACGCAAAAAA  450

seq1  ACCTGTCTTAATTATACAAGGACACACACGTTAGGAAGATTAGCCAAGAT  500
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTGTCTTAATTATACAAGGACACACAGGTTAGGAAGATTAGCCAAGAT  500

seq1  CTTCTCAAGTCTCATAATCTCTGTATAATTTAGAAGTTTGGTTTATTTAT  550
      |||||||||||||||||||||||||| |||||||| || | | |||||||
seq2  CTTCTCAAGTCTCATAATCTCTGTATCATTTAGAAATTCGCTCTATTTAT  550

seq1  TACTTTAAAAACATTTTTAATTAATTATTTTCTTTATTTATATTTCAAAT  600
      ||||||||||| || |  ||||||||||| ||||||||||||||||||||
seq2  TACTTTAAAAATATGTGAAATTAATTATTATCTTTATTTATATTTCAAAT  600

seq1  GTTTTCCCATTTCCTGGTTTCTCATATGAAAAACCCCTATCCCCTACCCA  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTTTCCCATTTCCTGGTTTCTCATATAAAAAACCCCTATCCCCTACCCA  650

seq1  CTCCCACTGCTCACTGACCAACCTACTCCAGCTACCTGGTCCTGAAATTC  700
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  CTCCCACTGCTCACTGACCAACCTACTCCAACTACCTGGTCCTGACATTC  700

seq1  CCCTACATTAGGACATTGAGCCTTCACAAGACTAAGGACATCTTCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACATTAGGACATTGAGCCTTCACAAGACTAAGGACATCTTCTCTCA  750

seq1  TTGATAACCAACAAAGCCATCCTCTGCTAAATATGCAGCTAGAGAAATGG  800
      ||||||||||||| ||||||||||||||||| ||||| ||||||||||||
seq2  TTGATAACCAACATAGCCATCCTCTGCTAAA-ATGCATCTAGAGAAATGG  799

seq1  TTCTCTCCATATGTACTCTTGGGCAGTGCTTTAGTCCCTAAGATCACTGT  850
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -TCTCTCCATATGTACTCTTGGGCAGTGCTTTAGTCCCT-AGATCACTGT  847

seq1  GGGTACTG--GTTGGTTCATATTGTTCCTCCTATGGGGCTGCAAAACCCT  898
      |||||| |  | ||||      || |||| |||||||| |||  ||||| 
seq2  GGGTACGGGAGGTGGT-----ATGCTCCT-CTATGGGG-TGC-TAACCCG  889

seq1  CCAGTACCTTGGGTCCTTTCTCTATCTCCTCCATTGTGGTCCCTGTGATC  948
      |||| | | |||||||  || || ||| || || ||| ||||| ||||||
seq2  CCAG-ATCCTGGGTCC-CTCCCT-TCT-CTGCAGTGT-GTCCCGGTGATC  934

seq1  AGTCCAATGGTTGGTTGAGAGCATCCTC  976
       |||| |||||| | |||||||||||||
seq2  -GTCC-ATGGTTTGATGAGAGCATCCTC  960

seq1: chr14_43444575_43445668
seq2: B6Ng01-059I16.g_67_1165 (reverse)

seq1  GAGAGGAGAGTCCGTTTTCTTCAGGGATGAATAAATAGGCTCTGTTTTAT  50
      |||||||||||||||||    ||| ||   ||||| ||| || || || |
seq2  GAGAGGAGAGTCCGTTTATCACAGCGA--GATAAA-AGGGTC-GTCTT-T  45

seq1  TTTTCAAC-AGCACATGAATTTGGTCAGAAATAGTGGTGTGAGCAGATTG  99
      || ||| | |||||  |    |||||||||| || || | ||||||||| 
seq2  TTGTCATCGAGCACGAG----TGGTCAGAAAAAG-GGGGGGAGCAGATT-  89

seq1  GATGATTGGGAGGGGAGTAAAGCGTCAATCTGATCAACATATATGTGTGT  149
      ||||| ||| || |||||||||||||||||||||| |||| |||||||| 
seq2  GATGA-TGGAAGAGGAGTAAAGCGTCAATCTGATC-ACAT-TATGTGTG-  135

seq1  GTAATATTTTCAAACAGTAAAATAAATACATTAAAAATAAATATGTTCTC  199
      || ||||||   ||||| ||||| |||||||  ||||| |||| | ||| 
seq2  GTTATATTT--CAACAGCAAAAT-AATACAT--AAAAT-AATA-GGTCT-  177

seq1  CCTATCAATAGAGACAGGGTACAAACACAGAGATTCATGACTTGGCTATG  249
      |||||||| |||||||||||   |||||||||||| |||||| |||||||
seq2  CCTATCAA-AGAGACAGGGT--CAACACAGAGATTTATGACTGGGCTATG  224

seq1  AAGAGTAAATGTTGGCATGCAACCACCCATCAGTATTTCTATACAGTTTA  299
      | |||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGAGT-AATGTT-GCATGCAACCACCCATCAGTATTTCTATACAGTTTA  272

seq1  TCAGCTGATATTAACTATGATGCGGAGAATATAGGTATAAATATTGAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGATATTAACTATGATGCGGAGAATATAGGTATAAATATTGAGCC  322

seq1  ATGACATTGACCTACCCGGCGCCTCCCCTCCCCTGTGCTCTGGGCACACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTGACCTACCCGGCGCCTCCCCTCCCCTGTGCTCTGGGCACACT  372

seq1  CTGGGCTGCTGGGCAAGCACCCTCTCTTCCTGCACTGCACTCATCCCCTG  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGGGCTGCTGGGCAAGCACCCTCTCTTCTTGCACTGCACTCATCCCCTG  422

seq1  AGGGGCCCCAACAACCTTTACCTCGCTAAGACTGCATGGGCCCTGCTGGG  499
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGGCCCCAACAACCTTTTCCTCGCTAAGACTGCATGGGCCCTGCTGGG  472

seq1  GGGAAAAGTAACTTGATTTTTCTCCAAGAAACCTGGCCGGATTAGGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGTAACTTGATTTTTCTCCAAGAAACCTGGCCGGATTAGGAAGC  522

seq1  CAAGGGGAGAAGAGTGGAGGAGGAGGGGAGCTGGAGGAACCTGGTGGAAG  599
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGAAGAGTGGAGGAGGAGGGGAGCTGGAGGAACCTGGTGGAAG  572

seq1  TCTCCTGGGCAGTCTGATCACACTTTCTCCTTGTCCTCCTGTCTCCTCCT  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTCCTGGGCAGTCTGATCACACTTTCTCCTTGTCCTCCAGTCTCCTCCT  622

seq1  CCTAGGTGCAGAGATTGTGGGCAGACTTTGTAATCCCTGAGGAGGGGATA  699
      ||||||||||||||||||||||||||||||||||  |||||||||||  |
seq2  CCTAGGTGCAGAGATTGTGGGCAGACTTTGTAATAGCTGAGGAGGGGGAA  672

seq1  --------------------------------CAAGGTGCAGCAACTTGG  717
                                      ||||||||||||||||||
seq2  GAGGAGGGATTGGCGCTCTCCTGCAGCACCAGCAAGGTGCAGCAACTTGG  722

seq1  CTAGGTGGAGTTTCACTGCAGCTGCTCCTGGTTTGCTCTGGAGGGAGAGG  767
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGGTGGAGTTTCACTGCAGCTGCTCCTGGTTTGCTCTGGAAGGAGAGG  772

seq1  AGGTCGGTCCCTCTAGCCTGGTGGCCAGTACAACTCTGGGAGTCCCTGAG  817
      || ||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AGATCGGTCCCTCTAGCCTGGTGGCCAGTACAACTCCGGGAGTCCATGAG  822

seq1  GCATGTAAGGCACCAAGTGCGCACCCCGGTTCCACTGTGCCATGCCTACA  867
      |||||||||||| ||||||||||||||||||||| | |||||  || |||
seq2  GCATGTAAGGCAGCAAGTGCGCACCCCGGTTCCAATTTGCCACTCCGACA  872

seq1  GCTTGCAGCCAGCATGGAGAAGGACAGCCCGAGTCACACTGATCAGCAGT  917
      |||||||||||||| ||||||||||| ||| |||||||||||||||||||
seq2  GCTTGCAGCCAGCAAGGAGAAGGACATCCCAAGTCACACTGATCAGCAGT  922

seq1  ATGAGTGCATGGCAGAGATTGGAGAAGTGCCTGCCTACAGGAAGGTGTTC  967
      ||||||||||||||||||| |||||||| |||||||||||| || |||||
seq2  ATGAGTGCATGGCAGAGATGGGAGAAGTCCCTGCCTACAGGTAGCTGTTC  972

seq1  AAGGACTGCAACCTGAAGAATGGCAGCCCCTTCCTGACTCTGAAGCA-CT  1016
      ||||  |||||||||||||   ||||||||||||||||| | |||||  |
seq2  AAGGCTTGCAACCTGAAGACACGCAGCCCCTTCCTGACT-TCAAGCATTT  1021

seq1  TGGGAGTGCAGACCAGTGAGGAGGGCATGCGACTCTCCACCATCCACGAG  1066
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  TGGGAGTGCAGACCAGTGAGGAGGGCATTCGGCTCTCCACCATCCACGAG  1071

seq1  GTGGCAGTGCTGAGACACCTGGAGAATT  1094
      ||||| || ||||| |||||||||||||
seq2  GTGGCGGTTCTGAGGCACCTGGAGAATT  1099