BAC Information

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BAC

Clone NameB6Ng01-059N23
Chromosome14 (Build37)
Map Location 103,511,196 - 103,597,146
singlet/doubletdoublet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N23.bB6Ng01-059N23.g
ACCDH881023DH881024
length1,0961,090
definitionDH881023|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N23, 5' end.DH881024|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,596,036 - 103,597,146)(103,511,196 - 103,512,312)
sequence
gaattctggcagtttgctagaaagagcagattaactgttcactgctacag
ttgtcagtaatggaaactgaaaatgagaggtagccaccactccctgcatt
caggagctctagctgtgcctaatgtgcagggaacaaagtcagcatagata
gaccatgccatctaccaaggagattttacagttacagaatataggcaaca
ggtactgttttcctgtattttcttagtataacttgtatgtcatggaccaa
agatagtaaggctggggcataggaggaaatagttgttctcaataaggcat
accaaaaatgtgtgcatgttgaaaaattcatagagaggtttctgttttcc
tttatttgccatgtatattgcacacatatttaacctctgcactcaaaagg
ccaagacaacgaatcataaatgtaaggccatgggtggactgtgagatgga
gcctttcttataaataaattagaaataagtaagatacaaagattctcttt
ttttcccaataggtgtgcaaaactcactctggcattcttggaaagggttt
ggctctttctcattcaccaactatcttagaggcacttgaaggaaacttgc
cgcttcaaatccaaagcaatgagcagtcctttctggatgatttcattgct
tgtgtcccagggtcaagtggtggaaggcttgcaaggtatttttaatgtta
caattaatttcttttaaggcttcatctctgaggagaaattaaaggaggaa
atggccattttcgtgttaaaatgctgtcttttaaaatccagattatgtgt
tttggacctaaagcaaaaggtgataatattttaaaatatgacacttatta
ctgtattgtctttctccattggctgtattagaatgaaaagagaaacatgc
tagcttgtgttaactaattaataaaaataaaagtggaacctccttttggt
ttgatctttaagtttcagagttgcccttcactattaaagccaaatgtgac
cagagacatagctagcctttcaatagcctccctttgtgcttatagaactt
gtataaatgcatgataggcagagggaaatggtttttttttttctcc
gaattctgtaaaatagttattagttacctgtgttcagaattgatgtcaca
tatatactcataatttttattaaaagctcatttttgggggacagaatctt
atagttaatccattcatgaccttgtattttctccttctctactttgttcc
cagaaaaaaatgactctcagatttcttatatatgaataaatgcttagttt
tatgactttggctctgttcctagactagcttatatcttaattaataatgc
ttgtttcattgtaagtcatgccacatgctggttacctggtcctcaggttc
acacaactgttttctcctgtgtctggggtgtgaattcctttgtgcctaac
tttattcccaggattctctctctctgccctggaacttccacctcactatt
tcctgcctaaggtaaaaggccaacattttattgacaagtaatgcttccct
aacagtgcaagagattctctgtacagaatctcatctatcccaggatggct
tcaaaactgctatgcagcttagtatgctctcctgcctccgcttccagagc
gctgtagtaaagttgtgcaccaccgtgccttcttcctggggtgctgtgga
tggaactgagggacttgtacagggtgggcaggccctatttcttctcttct
ggtgctgtcctttccctttcaactgctcccactcatgttctcatttgtct
gcaggtatgtgtaggctcaggtgaacctttgtgctcgtggggagctgaga
caacaaggcagaactaccacacagagctgccttttcaaagtgtgttctgg
ggaaccagacctctatcctaaagtgcacggcaagcaccttactgactgag
ctgctcctggctcccaatgctggtttaaactcctcacattgattacagag
atgaagccattaaatttgttaataatttatatgctggcaactgatttctg
tatttccacatgaaaatattttaaaagtgggtcaatctttctcagtatca
tgaatacacaaattctaaattatagttcacaaatgaaaaaaatctactat
tgtcagcaataaagtaacaataatgaagctgtgtctacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103596036_103597146
seq2: B6Ng01-059N23.b_49_1144 (reverse)

seq1  GGAGAAAAAAAAAAAAACCATTTCCCTCTGCCTATCATGCATTATATACA  50
      ||||  ||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAG--AAAAAAAAAAACCATTTCCCTCTGCCTATCATGCATT-TATACA  47

seq1  AGTGTCTATAAGCACAAAAGGGAGGCTAATTGAAAAGCCTAGCTATTGTC  100
      ||| ||||||||||| ||||||||||| |||| |||| ||||||| ||||
seq2  AGT-TCTATAAGCAC-AAAGGGAGGCT-ATTG-AAAGGCTAGCTA-TGTC  92

seq1  TCTTGGTCAACATTTTGGCTTTAAATAGTGAAGTGCAACCTCTGAAACTT  150
      || ||||| ||| ||||||||| |||||||||| |||| |||||||||||
seq2  TC-TGGTC-ACA-TTTGGCTTT-AATAGTGAAGGGCAA-CTCTGAAACTT  137

seq1  AAAGATCAAAACCAAAAGGAGGTTCCACTTTTATTTTTTATTAATTAGTT  200
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGATC-AAACCAAAAGGAGGTTCCACTTTTA-TTTTTATTAATTAGTT  185

seq1  AACACAAGCTAGCATGTTTCTCTTTTCATTCTAATACAGCCAATGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGCTAGCATGTTTCTCTTTTCATTCTAATACAGCCAATGGAGAA  235

seq1  AGACAATACAGTAATAAGTGTCATATTTTAAAATATTATCACCTTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATACAGTAATAAGTGTCATATTTTAAAATATTATCACCTTTTGCT  285

seq1  TTAGGTCCAAAACACATAATCTGGATTTTAAAAGACAGCATTTTAACACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCAAAACACATAATCTGGATTTTAAAAGACAGCATTTTAACACG  335

seq1  AAAATGGCCATTTCCTCCTTTAATTTCTCCTCAGAGATGAAGCCTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCATTTCCTCCTTTAATTTCTCCTCAGAGATGAAGCCTTAAAA  385

seq1  GAAATTAATTGTAACATTAAAAATACCTTGCAAGCCTTCCACCACTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTGTAACATTAAAAATACCTTGCAAGCCTTCCACCACTTGAC  435

seq1  CCTGGGACACAAGCAATGAAATCATCCAGAAAGGACTGCTCATTGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACACAAGCAATGAAATCATCCAGAAAGGACTGCTCATTGCTTTG  485

seq1  GATTTGAAGCGGCAAGTTTCCTTCAAGTGCCTCTAAGATAGTTGGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAGCGGCAAGTTTCCTTCAAGTGCCTCTAAGATAGTTGGTGAAT  535

seq1  GAGAAAGAGCCAAACCCTTTCCAAGAATGCCAGAGTGAGTTTTGCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGCCAAACCCTTTCCAAGAATGCCAGAGTGAGTTTTGCACACC  585

seq1  TATTGGGAAAAAAAGAGAATCTTTGTATCTTACTTATTTCTAATTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGAAAAAAAGAGAATCTTTGTATCTTACTTATTTCTAATTTATTT  635

seq1  ATAAGAAAGGCTCCATCTCACAGTCCACCCATGGCCTTACATTTATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGGCTCCATCTCACAGTCCACCCATGGCCTTACATTTATGATT  685

seq1  CGTTGTCTTGGCCTTTTGAGTGCAGAGGTTAAATATGTGTGCAATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCTTGGCCTTTTGAGTGCAGAGGTTAAATATGTGTGCAATATACA  735

seq1  TGGCAAATAAAGGAAAACAGAAACCTCTCTATGAATTTTTCAACATGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATAAAGGAAAACAGAAACCTCTCTATGAATTTTTCAACATGCAC  785

seq1  ACATTTTTGGTATGCCTTATTGAGAACAACTATTTCCTCCTATGCCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGGTATGCCTTATTGAGAACAACTATTTCCTCCTATGCCCCAG  835

seq1  CCTTACTATCTTTGGTCCATGACATACAAGTTATACTAAGAAAATACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTATCTTTGGTCCATGACATACAAGTTATACTAAGAAAATACAGG  885

seq1  AAAACAGTACCTGTTGCCTATATTCTGTAACTGTAAAATCTCCTTGGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTACCTGTTGCCTATATTCTGTAACTGTAAAATCTCCTTGGTAG  935

seq1  ATGGCATGGTCTATCTATGCTGACTTTGTTCCCTGCACATTAGGCACAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGGTCTATCTATGCTGACTTTGTTCCCTGCACATTAGGCACAGC  985

seq1  TAGAGCTCCTGAATGCAGGGAGTGGTGGCTACCTCTCATTTTCAGTTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCCTGAATGCAGGGAGTGGTGGCTACCTCTCATTTTCAGTTTCC  1035

seq1  ATTACTGACAACTGTAGCAGTGAACAGTTAATCTGCTCTTTCTAGCAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGACAACTGTAGCAGTGAACAGTTAATCTGCTCTTTCTAGCAAAC  1085

seq1  TGCCAGAATTC  1111
      |||||||||||
seq2  TGCCAGAATTC  1096

seq1: chr14_103511196_103512312
seq2: B6Ng01-059N23.g_67_1156

seq1  GAATTCTGTAAAATAGTTATTAGTTACCTGTGTTCAGAATTGATGTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAAATAGTTATTAGTTACCTGTGTTCAGAATTGATGTCACA  50

seq1  TATATACTCATAATTTTTATTAAAAGCTCATTTTTGGGGGACAGAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCATAATTTTTATTAAAAGCTCATTTTTGGGGGACAGAATCTT  100

seq1  ATAGTTAATCCATTCATGACCTTGTATTTTCTCCTTCTCTACTTTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATCCATTCATGACCTTGTATTTTCTCCTTCTCTACTTTGTTCC  150

seq1  CAGAAAAAAATGACTCTCAGATTTCTTATATATGAATAAATGCTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAATGACTCTCAGATTTCTTATATATGAATAAATGCTTAGTTT  200

seq1  TATGACTTTGGCTCTGTTCCTAGACTAGCTTATATCTTAATTAATAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGGCTCTGTTCCTAGACTAGCTTATATCTTAATTAATAATGC  250

seq1  TTGTTTCATTGTAAGTCATGCCACATGCTGGTTACCTGGTCCTCAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTGTAAGTCATGCCACATGCTGGTTACCTGGTCCTCAGGTTC  300

seq1  ACACAACTGTTTTCTCCTGTGTCTGGGGTGTGAATTCCTTTGTGCCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGTTTTCTCCTGTGTCTGGGGTGTGAATTCCTTTGTGCCTAAC  350

seq1  TTTATTCCCAGGATTCTCTCTCTCTGCCCTGGAACTTCCACCTCACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCAGGATTCTCTCTCTCTGCCCTGGAACTTCCACCTCACTATT  400

seq1  TCCTGCCTAAGGTAAAAGGCCAACATTTTATTGACAAGTAATGCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTAAGGTAAAAGGCCAACATTTTATTGACAAGTAATGCTTCCCT  450

seq1  AACAGTGCAAGAGATTCTCTGTACAGAATCTCATCTATCCCAGGATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCAAGAGATTCTCTGTACAGAATCTCATCTATCCCAGGATGGCT  500

seq1  TCAAAACTGCTATGCAGCTTAGTATGCTCTCCTGCCTCCGCTTCCAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGCTATGCAGCTTAGTATGCTCTCCTGCCTCCGCTTCCAGAGC  550

seq1  GCTGTAGTAAAGTTGTGCACCACCGTGCCTTCTTCCTGGGGTGCTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGTAAAGTTGTGCACCACCGTGCCTTCTTCCTGGGGTGCTGTGGA  600

seq1  TGGAACTGAGGGACTTGTACAGGGTGGGCAGGCCCTATTTCTTCTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGAGGGACTTGTACAGGGTGGGCAGGCCCTATTTCTTCTCTTCT  650

seq1  GGTGCTGTCCTTTCCCTTTCAACTGCTCCCACTCATGTTCTCATTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCCTTTCCCTTTCAACTGCTCCCACTCATGTTCTCATTTGTCT  700

seq1  GCAGGTATGTGTAGGCTCAGGTGAACCTTTGTGCTCGTGGGGAGCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATGTGTAGGCTCAGGTGAACCTTTGTGCTCGTGGGGAGCTGAGA  750

seq1  CAACAAGGCAGAACTACCACACAGAGCTGCCTTTTCAAAGTGTGTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCAGAACTACCACACAGAGCTGCCTTTTCAAAGTGTGTTCTGG  800

seq1  GGAACCAGACCTCTATCCTAAAGTGCACGGCAAGCACCTTACTGACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGACCTCTATCCTAAAGTGCACGGCAAGCACCTTACTGACTGAG  850

seq1  CTGCTCCTGGCTCCCAATGCTGGTTTAAACTCCTCACAATTGATTAACAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CTGCTCCTGGCTCCCAATGCTGGTTTAAACTCCTCAC-ATTGATT-ACAG  898

seq1  AGATGAAGGCCATTAAATTTGTTAATAATTTATATGCTGGCAAACTGATT  950
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATGAA-GCCATTAAATTTGTTAATAATTTATATGCTGGC-AACTGATT  946

seq1  TCTGTATTTCCAACAATGAAAATATTTTAAAAAGTGGGTCAAATCTTTCC  1000
      ||||||||||||   ||||||||||||| ||||||||||| ||||||| |
seq2  TCTGTATTTCCA--CATGAAAATATTTT-AAAAGTGGGTC-AATCTTT-C  991

seq1  TCAGTATCATGAAATACACAAA-TCTAAAATTTATTAGTTTCACAAATGG  1049
      ||||||||||| |||||||||| ||||||  ||| ||| |||||||||| 
seq2  TCAGTATCATG-AATACACAAATTCTAAA--TTA-TAG-TTCACAAATG-  1035

seq1  AAAAAAAAATCTAACCATATGTCAGCAAAATAAAAAGGTAACAAATAAAT  1099
        |||||||||| || || |||||||  ||||||   |||||||   |||
seq2  --AAAAAAATCT-ACTAT-TGTCAGC--AATAAA---GTAACAA--TAAT  1074

seq1  GGAAAGCTGTGCCTACAT  1117
      |  |||||||| ||||||
seq2  G--AAGCTGTGTCTACAT  1090