BAC Information

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BAC

Clone NameB6Ng01-062N16
Chromosome14 (Build37)
Map Location 48,191,931 - 48,333,792
singlet/doubletdoublet
Overlap geneLOC100042787, Ktn1
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N16.bB6Ng01-062N16.g
ACCDH883119DH883120
length965448
definitionDH883119|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N16, 5' end.DH883120|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,191,931 - 48,192,896)(48,333,339 - 48,333,792)
sequence
gaattcttaaagggccagttgactagctcctgggaatcctttaaaggtcc
aggtgcacactagagtggtgtactaggatatatcaaaacttcatgtttag
agggtgaaccaaacctctgcaaccaataaaactgtagcagttcttggtgg
acctctagcaaggaggggactcttccaaagggtatggagattgatcgggt
gcgtgggggcctgcaatggggcagagttgaccccgaatctctctctctta
aagatttatttaatgtatatgcacacattgtagctgtcttcagacacacc
agaagagtgtattggatcccattacagatggttgtaagccaccatgtggt
tgctgggaattgaactcaggacctttggaagaacagtcggtgctcttaac
ctctgagtcatctctccagccctacaaccccgaatctctcaagcacacac
tttttattcagtttaagggtaggccttgataacaacaagggttggtttaa
acccattgttggcccaagctgaccttttcattccccgatttagaaatggt
aattagcctctcccttctggagaggcaagtgtttcatgaccttccctaag
cagcattgttggccctgggtgaggtgaggtcttagtcaacagaagaggga
actgaaacattcttggtccttagctgcacctgccttgcagtggaggcttc
cttgtaaagcttgttttccggggtcattctgggaagggagtgttcctcac
aaccttacaaccttctagcagaaggtccccagcgtgctactctagcaagg
actttcagcggtcatcttttgttctctaaggtcacacattcccacaggtc
tacttccaaaaccttctccgacagtggcaagcacaggaattcttgattag
agattgtgtggcttactctgtgtgttctgtaataaggagagtggaagaga
gaaagggagaggaac
acttgtttttatccaatctttggatttgtggctttggtttctctttgttt
ttcatcttgttctgtctaatgccttaagttatttcccagaaatgcaaaaa
gaaaaggcaaaatttcaaaattcatttgtgttatacttgagtagaatgtc
taatcacaaacagccaatctggtccttgaactttaaagttatttgtttta
ttttagaaatgaagtgcttcctcacaatgacttgtgggatggtggtggtg
gtggtgctattttgaaattggcctgatagcacccacatgaaaaatgttat
gactagcagaggatcactggatgtatcttattcccagccaagaccctccc
aagtggtgtcctaaaatcctcttctccctgttacagcccagatccagtaa
agctaatgacaacgaactgccaaacatcctgtcacaatattaggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48191931_48192896
seq2: B6Ng01-062N16.b_48_1012

seq1  GAATTCTTAAAGGGCCAGTTGACTAGCTCCTGGGAATCCTTTAAAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAGGGCCAGTTGACTAGCTCCTGGGAATCCTTTAAAGGTCC  50

seq1  AGGTGCACACTAGAGTGGTGTACTAGGATATATCAAAACTTCATGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACACTAGAGTGGTGTACTAGGATATATCAAAACTTCATGTTTAG  100

seq1  AGGGTGAACCAAACCTCTGCAACCAATAAAACTGTAGCAGTTCTTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAACCAAACCTCTGCAACCAATAAAACTGTAGCAGTTCTTGGTGG  150

seq1  ACCTCTAGCAAGGAGGGGACTCTTCCAAAGGGTATGGAGATTGATCGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGCAAGGAGGGGACTCTTCCAAAGGGTATGGAGATTGATCGGGT  200

seq1  GCGTGGGGGCCTGCAATGGGGCAGAGTTGACCCCGAATCTCTCTCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGGGCCTGCAATGGGGCAGAGTTGACCCCGAATCTCTCTCTCTTA  250

seq1  AAGATTTATTTAATGTATATGCACACATTGTAGCTGTCTTCAGACACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTAATGTATATGCACACATTGTAGCTGTCTTCAGACACACC  300

seq1  AGAAGAGTGTATTGGATCCCATTACAGATGGTTGTAAGCCACCATGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGTATTGGATCCCATTACAGATGGTTGTAAGCCACCATGTGGT  350

seq1  TGCTGGGAATTGAACTCAGGACCTTTGGAAGAACAGTCGGTGCTCTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAATTGAACTCAGGACCTTTGGAAGAACAGTCGGTGCTCTTAAC  400

seq1  CTCTGAGTCATCTCTCCAGCCCTACAACCCCGAATCTCTCAAGCACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCATCTCTCCAGCCCTACAACCCCGAATCTCTCAAGCACACAC  450

seq1  TTTTTATTCAGTTTAAGGGTAGGCCTTGATAACAACAAGGGTTGGTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAGTTTAAGGGTAGGCCTTGATAACAACAAGGGTTGGTTTAA  500

seq1  ACCCATTGTTGGCCCAAGCTGACCTTTTCATTCCCCGATTTAGAAATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTGTTGGCCCAAGCTGACCTTTTCATTCCCCGATTTAGAAATGGT  550

seq1  AATTAGCCTCTCCCTTCTGGAGAGGCAAGTGTTTCATGACCTTCCCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCTCTCCCTTCTGGAGAGGCAAGTGTTTCATGACCTTCCCTAAG  600

seq1  CAGCATTGTTGGCCCTGGGTGAGGTGAGGTCTTAGTCAACAGAAGAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGTTGGCCCTGGGTGAGGTGAGGTCTTAGTCAACAGAAGAGGGA  650

seq1  ACTGAAACATTCTTGGTCCTTAGCTGCACCTGCCTTGCAGTGGAGGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACATTCTTGGTCCTTAGCTGCACCTGCCTTGCAGTGGAGGCTTC  700

seq1  CTTGTAAAGCTTGTTTTCCGGGGTCATTCTGGGAAGGGAGTGTTCCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAGCTTGTTTTCCGGGGTCATTCTGGGAAGGGAGTGTTCCTCAC  750

seq1  AACCTTACAACCTTCTAGCAGAAGGTCCCCAGCGTGCTACTCTAGCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTACAACCTTCTAGCAGAAGGTCCCCAGCGTGCTACTCTAGCAAGG  800

seq1  ACTTTCAGCGGTCATCTTTTGTTCTCTAAGGTCACACATTCCCACAGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGCGGTCATCTTTTGTTCTCTAAGGTCACACATTCCCACAGGTC  850

seq1  TACTTCCAAAACCTTCTCCGACAGTGGCAAGCACAAGGAATTCCTGATTA  900
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TACTTCCAAAACCTTCTCCGACAGTGGCAAGCAC-AGGAATTCTTGATTA  899

seq1  GAGA-TGTGTTGCTTACTCTGTGTG-TCTGTAAATAAAGGAGAGTGAAGG  948
      |||| ||||| |||||||||||||| |||||||   |||||||||| | |
seq2  GAGATTGTGTGGCTTACTCTGTGTGTTCTGTAA--TAAGGAGAGTGGAAG  947

seq1  AGAGAAAGGGAGAGGAAC  966
      ||||||||||||||||||
seq2  AGAGAAAGGGAGAGGAAC  965

seq1: chr14_48333339_48333792
seq2: B6Ng01-062N16.g_69_522 (reverse)

seq1  CATACCTAATATTGTGACAGGATGTTTGGCAGTTCGTTGTCATTAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTAATATTGTGACAGGATGTTTGGCAGTTCGTTGTCATTAGCTTT  50

seq1  ACTGACTCTGGGCTGTAACAGGGAGAAGAGGATTTTAGGACACCACTTGG  100
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATCTGGGCTGTAACAGGGAGAAGAGGATTTTAGGACACCACTTGG  100

seq1  GAGGGTCTGGGCTGGGAATAAGATACATCCAGTGATCCTCTGCTAGTCAT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTTGGCTGGGAATAAGATACATCCAGTGATCCTCTGCTAGTCAT  150

seq1  AACATTTTTCATGTGGGTGCTATCAGGCCAATTTCAAAATAGCACCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTCATGTGGGTGCTATCAGGCCAATTTCAAAATAGCACCACCA  200

seq1  CCACCACCATCCCACAAGTCATTGTGAGGAAGCACTTCATTTCTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCATCCCACAAGTCATTGTGAGGAAGCACTTCATTTCTAAAATA  250

seq1  AAACAAATAACTTTAAAGTTCAAGGACCAGATTGGCTGTTTGTGATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAACTTTAAAGTTCAAGGACCAGATTGGCTGTTTGTGATTAGA  300

seq1  CATTCTACTCAAGTATAACACAAATGAATTTTGAAATTTTGCCTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACTCAAGTATAACACAAATGAATTTTGAAATTTTGCCTTTTCTT  350

seq1  TTTGCATTTCTGGGAAATAACTTAAGGCATTAGACAGAACAAGATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCTGGGAAATAACTTAAGGCATTAGACAGAACAAGATGAAAA  400

seq1  ACAAAGAGAAACCAAAGCCACAAATCCAAAGATTGGATAAAAACAAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAACCAAAGCCACAAATCCAAAGATTGGATAAAAACAAGTGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454