BAC Information

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BAC

Clone NameB6Ng01-063P07
Chromosome14 (Build37)
Map Location 111,552,885 - 111,647,374
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P07.bB6Ng01-063P07.g
ACCDH883890DH883891
length1,1221,203
definitionDH883890|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P07, 5' end.DH883891|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,552,885 - 111,554,030)(111,646,134 - 111,647,374)
sequence
gaattctacatacaggcaacagcttgtgggatagccaccgttcctgtttg
atgtactactgagtaatagtaataaaaactacatggcactgttatagaca
aggacaagttgatcaatgggattgaattgaagaccctgaaataaacccac
atacctatggacacatgattcttgacaaaaaccaaaactatgcaatgaaa
aaaaaaaaagtgtcttcaacagatggtgctgatctgactggatgtttgca
tggagaagaatgcaaatagatccacatttatcaccctgtacaaatctcaa
gtccacgtggatcaaagacctcaacataaaccagacacagtacatataat
agaacagaaagcagggaatggcctcaaacacattgttacaggagacaatt
tcctgaacagagctccagtggctcaccctctaagatcaacacttgatgaa
tgggatcccatcttcttttaaactgcttgcttgcaggagacctacccgcc
agctgctgaagaaaataccattatgtggtttttggctttaaacaccccag
gctacacttgggtcctgaatccctgaggatagtccagccagctggaataa
agactttcaactggctataaattgtatctgagtgattatctctggtgcaa
ttcccttaacaagagtgggacaggtggctgagcctagccttctgtgactg
ctagaaccagggcatttgtgataaaatgtctgttataatactatatacat
agtataattatcgtagaaattatgatattattagcaaggttcacatagtt
atgagagccatgatgctaattttagttttggctttcgacatgctacaaga
tttaattcatacaacacacaaacataagcaatgctgttcattgccaaatg
agctttattttataccattgtcagaaagatagaattgcactaacttgtcc
aggattttacagaccacacaaatttgaaccttggtatttatcctaagccc
tttctttgcactgctcaagaaaagagtagtttgtaaattctttataagtt
tatgaagcatatttttttcatgctatgagataacaaatgatctaagatag
catcatcactcaaagaatgcag
gaattctcattttatagtactagactgtgaataggatgtgagttcatttc
ctttaaatttcaattacacaatactgtctttaaataaatatcatttatat
catcatttattacattgattaatcttgagagatatataaaaattaacata
cactaatatattaacataatcataaaactgtgttttgcgtacatatatta
cggtagtattgaagattgtcactacacctgtattaatactgcatcaaaaa
ccaagacacagttacatttctgcttttggtttgaaatatacatttttgat
tttagaatatttaaggcttttgggtatgtatattaacatgtgaatctaga
ttattgttagaccaacaagattttctaaatattcattgagctagaagttt
aatcttcagaaaatatatataaatgagaaatgtaataatttaggccgatg
tgaaatgaaactaatcagttgaaaaaatcacttagaatcatctaaattat
atacccattttaggattaaaacacctctaatgaacaaaccacagcacaga
gacttcatgtctgaaactgcatcaaaaaattgctccagccattagccatt
ttaatattctcttttatgcttgtagaaacatctaattaatatctgaatga
tgatataagaggtttattattgattttaccaaaaagaaacaaattaagaa
ttatgaaatattaaaaattcgacactatcttaaaatgtagacagtatctt
tatatgtaagaaataattggtatgaaaaataagttacagctgatatatat
tatatataagttcagtttcagagggtaagtattcaaatgcaagacaatgg
tcaaaaatcctaaggacaaaaatgaatgtgacagaaatgccaagttgtta
tctgaaacagaaacagaattatttaaatttagagatatatttgtgtgtga
aagtttattttgtttgtgtgtctgcatgtgtgttccatacatttgcctgt
gggtttttttattttataaatactcagatactataaagagaatgaaacaa
taaaagactatattgtactgatatatggtatgtcctcgtccagtaacaag
gcttgatgaatgccatgggagattctaactgaaataattagcaaattatg
gtgccatgcttaggacaggtacccataccgaaagagtactggccacacac
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111552885_111554030
seq2: B6Ng01-063P07.b_48_1169

seq1  GAATTCTACATACAGGCAACAGCTTGTGGGATAGCCACCGTTCCTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATACAGGCAACAGCTTGTGGGATAGCCACCGTTCCTGTTTG  50

seq1  ATGTACTACTGAGTAATAGTAATAAAAACTACATGGCACTGTTATAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTACTGAGTAATAGTAATAAAAACTACATGGCACTGTTATAGACA  100

seq1  AGGACAAGTTGATCAATGGGATTGAATTGAAGACCCTGAAATAAACCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGTTGATCAATGGGATTGAATTGAAGACCCTGAAATAAACCCAC  150

seq1  ATACCTATGGACACATGATTCTTGACAAAAACCAAAACTATGCAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATGGACACATGATTCTTGACAAAAACCAAAACTATGCAATGAAA  200

seq1  AAAAAAAAAGTGTCTTCAACAGATGGTGCTGATCTGACTGGATGTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTGTCTTCAACAGATGGTGCTGATCTGACTGGATGTTTGCA  250

seq1  TGGAGAAGAATGCAAATAGATCCACATTTATCACCCTGTACAAATCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAATGCAAATAGATCCACATTTATCACCCTGTACAAATCTCAA  300

seq1  GTCCACGTGGATCAAAGACCTCAACATAAACCAGACACAGTACATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGTGGATCAAAGACCTCAACATAAACCAGACACAGTACATATAAT  350

seq1  AGAACAGAAAGCAGGGAATGGCCTCAAACACATTGTTACAGGAGACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAAGCAGGGAATGGCCTCAAACACATTGTTACAGGAGACAATT  400

seq1  TCCTGAACAGAGCTCCAGTGGCTCACCCTCTAAGATCAACACTTGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAGAGCTCCAGTGGCTCACCCTCTAAGATCAACACTTGATGAA  450

seq1  TGGGATCCCATCTTCTTTTAAACTGCTTGCTTGCAGGAGACCTACCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCCATCTTCTTTTAAACTGCTTGCTTGCAGGAGACCTACCCGCC  500

seq1  AGCTGCTGAAGAAAATACCATTATGTGGTTTTTGGCTTTAAACACCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGAAGAAAATACCATTATGTGGTTTTTGGCTTTAAACACCCCAG  550

seq1  GCTACACTTGGGTCCTGAATCCCTGAGGATAGTCCAGCCAGCTGGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTTGGGTCCTGAATCCCTGAGGATAGTCCAGCCAGCTGGAATAA  600

seq1  AGACTTTCAACTGGCTATAAATTGTATCTGAGTGATTATCTCTGGTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCAACTGGCTATAAATTGTATCTGAGTGATTATCTCTGGTGCAA  650

seq1  TTCCCTTAACAAGAGTGGGACAGGTGGCTGAGCCTAGCCTTCTGTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAACAAGAGTGGGACAGGTGGCTGAGCCTAGCCTTCTGTGACTG  700

seq1  CTAGAACCAGGGCATTTGTGATAAAATGTCTGTTATAATACTATATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCAGGGCATTTGTGATAAAATGTCTGTTATAATACTATATACAT  750

seq1  AGTATAATTATCGTAGAAATTATGATATTATTAGCAAGGTTCACATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATTATCGTAGAAATTATGATATTATTAGCAAGGTTCACATAGTT  800

seq1  ATGAGAGCCATGATGCTAATTTTAGTTTTGGCTTTCGACATGCTACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGCCATGATGCTAATTTTAGTTTTGGCTTTCGACATGCTACAAGA  850

seq1  TTTAATTCATACAACACACAAACATAAGCAATGCTGTTCATTGCCAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCATACAACACACAAACATAAGCAATGCTGTTCATTGCCAAATG  900

seq1  AGCTATATTTTATACCATTGTCAGAAAGATAGAATTGCACTAACTTGTCC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTTTATACCATTGTCAGAAAGATAGAATTGCACTAACTTGTCC  950

seq1  AGGATTTTACAGA-CACACAAATTTGAACCTTGGTAATTTATCCTAAGCC  999
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  AGGATTTTACAGACCACACAAATTTGAACCTTGGT-ATTTATCCTAAGCC  999

seq1  CTTTCTTTTGCACTGCTCAAAGAAAAAGAAGTAGTTTTTGTAAAATTCTT  1049
      ||||| |||||||||||| |||||||   |||||||| |   |||||| |
seq2  CTTTC-TTTGCACTGCTC-AAGAAAA--GAGTAGTTTGT---AAATTC-T  1041

seq1  TTATAAGTTTATTGAAAGCATATTTTTTTTCAGTGCTAAATGAGATACAC  1099
      ||||||||||||   ||||||| ||||||||| ||||  |||||||| ||
seq2  TTATAAGTTTAT--GAAGCATA-TTTTTTTCA-TGCT--ATGAGATA-AC  1084

seq1  AAAATGGATCCTAAAAGGATAAGCAATCATCACTCAAAAGAATGCAG  1146
      |||   ||| ||||   ||| ||| |||||||||| |||||||||||
seq2  AAA--TGAT-CTAA---GAT-AGC-ATCATCACTC-AAAGAATGCAG  1122

seq1: chr14_111646134_111647374
seq2: B6Ng01-063P07.g_68_1270 (reverse)

seq1  TTTGTGTTTGCCAAGTACT-TTTCTGTAT-GGTACCTGCTCTAAAGCATG  48
      ||||||| || | |||||| |||| |||| |||||||| ||  |||||||
seq2  TTTGTGTGTGGCCAGTACTCTTTCGGTATGGGTACCTG-TCCTAAGCATG  49

seq1  GCACATTAATTTTGCTTATTTTATTTTTCCATGTTTTGAATCT-CCATGG  97
      ||||  ||| |||||| |  ||||||   ||   || |||||| ||||||
seq2  GCACCATAA-TTTGCTAA--TTATTT---CA--GTTAGAATCTCCCATGG  91

seq1  CCATTTCCATACAGACTTGTTACCTGTGAACAGAGACAATACCATATTAT  147
       ||||  |||  || ||||||||   || || |||   |||||||| |||
seq2  -CATT--CATCAAGCCTTGTTAC---TGGAC-GAGGACATACCATA-TAT  133

seq1  CAGTAACAATATTAGTCTTTTTTATTGTTTTCATCTCCTTTTATTAGTAA  197
      |||| |||||| |||||  |||||||||||   ||||  |||| ||||| 
seq2  CAGT-ACAATA-TAGTC--TTTTATTGTTTCATTCTC--TTTA-TAGTA-  175

seq1  TTCTTGAAGTATTTATAAAAATTAAAAAAAACCCACAGGCAAATGTAATG  247
       |||   |||||||||||||    |||||||||||||||||||||| |||
seq2  -TCT--GAGTATTTATAAAA---TAAAAAAACCCACAGGCAAATGT-ATG  218

seq1  GAAACACACATGCAAGAACAACAACAAAACAAAATAAACTTTCACACACA  297
      | ||||||||||||      |||   ||||||||||||||||||||||||
seq2  G-AACACACATGCA-----GACACACAAACAAAATAAACTTTCACACACA  262

seq1  AAATAATAT-TCTCTAAATTTAAATAATTCTGTTTCTGTTTCAGATAACA  346
          ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ----AATATATCTCTAAATTTAAATAATTCTGTTTCTGTTTCAGATAACA  308

seq1  ACTTGGCATTTCTGTCACATTCATTTTTGTCCTTAGGATTTTTGACCATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCATTTCTGTCACATTCATTTTTGTCCTTAGGATTTTTGACCATT  358

seq1  GTCTTGCATTTGAATACTTACCCTCTGAAACTGAACTTATATATAATATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCATTTGAATACTTACCCTCTGAAACTGAACTTATATATAATATA  408

seq1  TATCAGCTGTAACTTATTTTTCATACCAATTATTTCTTACATATAAAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTGTAACTTATTTTTCATACCAATTATTTCTTACATATAAAGAT  458

seq1  ACTGTCTACATTTTAAGATAGTGTCGAATTTTTAATATTTCATAATTCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTACATTTTAAGATAGTGTCGAATTTTTAATATTTCATAATTCTT  508

seq1  AATTTGTTTCTTTTTGGTAAAATCAATAATAAACCTCTTATATCATCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTCTTTTTGGTAAAATCAATAATAAACCTCTTATATCATCATT  558

seq1  CAGATATTAATTAGATGTTTCTACAAGCATAAAAGAGAATATTAAAATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTAATTAGATGTTTCTACAAGCATAAAAGAGAATATTAAAATGG  608

seq1  CTAATGGCTGGAGCAATTTTTTGATGCAGTTTCAGACATGAAGTCTCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCTGGAGCAATTTTTTGATGCAGTTTCAGACATGAAGTCTCTGT  658

seq1  GCTGTGGTTTGTTCATTAGAGGTGTTTTAATCCTAAAATGGGTATATAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTTGTTCATTAGAGGTGTTTTAATCCTAAAATGGGTATATAAT  708

seq1  TTAGATGATTCTAAGTGATTTTTTCAACTGATTAGTTTCATTTCACATCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGATTCTAAGTGATTTTTTCAACTGATTAGTTTCATTTCACATCG  758

seq1  GCCTAAATTATTACATTTCTCATTTATATATATTTTCTGAAGATTAAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATTATTACATTTCTCATTTATATATATTTTCTGAAGATTAAACT  808

seq1  TCTAGCTCAATGAATATTTAGAAAATCTTGTTGGTCTAACAATAATCTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCAATGAATATTTAGAAAATCTTGTTGGTCTAACAATAATCTAG  858

seq1  ATTCACATGTTAATATACATACCCAAAAGCCTTAAATATTCTAAAATCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGTTAATATACATACCCAAAAGCCTTAAATATTCTAAAATCAA  908

seq1  AAATGTATATTTCAAACCAAAAGCAGAAATGTAACTGTGTCTTGGTTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATATTTCAAACCAAAAGCAGAAATGTAACTGTGTCTTGGTTTTT  958

seq1  GATGCAGTATTAATACAGGTGTAGTGACAATCTTCAATACTACCGTAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTATTAATACAGGTGTAGTGACAATCTTCAATACTACCGTAATA  1008

seq1  TATGTACGCAAAACACAGTTTTATGATTATGTTAATATATTAGTGTATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACGCAAAACACAGTTTTATGATTATGTTAATATATTAGTGTATGT  1058

seq1  TAATTTTTATATATCTCTCAAGATTAATCAATGTAATAAATGATGATATA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTATATATCTCTCAAGATTAATCAATGTAATAAATGATGATATA  1108

seq1  AATGATATTTATTTAAAGACAGTATTGTGTAATTGAAATTTAAAGGAAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTTATTTAAAGACAGTATTGTGTAATTGAAATTTAAAGGAAAT  1158

seq1  GAACTCACATCCTATTCACAGTCTAGTACTATAAAATGAGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACATCCTATTCACAGTCTAGTACTATAAAATGAGAATTC  1203