BAC Information

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BAC

Clone NameB6Ng01-064F01
Chromosome14 (Build37)
Map Location 4,688,116 - 4,689,317
singlet/doubletsinglet
Overlap geneLOC666555
Upstream geneLOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560
Downstream geneEG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064F01.bB6Ng01-064F01.g
ACCDH884139DH884140
length1,1701,124
definitionDH884139|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F01, 5' end.DH884140|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtataagcatcagttcctcctatgtataggatgagtaaggtg
tcacccatgccatagagatggagaagtggctttaactagatacttgctaa
ctcaccatacgctacaaagaaaaagggagaccagagaggtgacctctggt
caaagacttgtctacctcttgctaaactgttgagcccaagatacccttca
ggtagcagatgaactgtcttctccagggcagcatgaaggtcctggaagtg
gtcctgctacatgcccaggagacagtagagcaatatctctgctttggtgc
ctactacctcctgttcctgctgtgactgctcacagaagctcaatagtatg
gtgtactgcagcactctgttcatggcctttacctgtgtcgtggcatgggc
aaggctctgtaaatactatatgagccattcctggctctctggctccctgt
tggtgtcattttccctctctgtatatggccagatagcatcagggcttagt
gagggcagcagagtgacacagactgaattgggccttcaggctagggaact
gtaaataggaaggctatgcgattgataggctggaactaacctcctgcatc
actggtaataaggcatgatcatggaatgcctctccctctacttcttcttt
ctggcaaaaccaagttagctgagattgtaaccatacttgaagagaagaga
caaaaatggagaaggcagaggtggtgaccactccatcctaggtcctgcca
cagatgggcttgacccctcctgctccacttccagttgactatcccacttc
aaacttctatttcagttgggattggaggagggtaaagtcactgaagccca
acagttcccagaattctgacacggaggcatgtgcctatgagatcttcttt
tcaggctccatccttcctggcccaccttcagtactgagaattacagcaga
aaacatgagaattgtgctgctgacttgcctggtagttcatcttcagatct
atcctcataccacccatgaccatttgctcagtatggtaactccaagtctc
tgggtggctctaccagttatacgaaactgactgtatcacaggatgcccaa
ggccactttgtaaagacagttccccctggaacttgattctgtgaaccatc
acaacaggtttaacatggag
gaattccacataaaaccagagaccatgaaacttatagaggagaaagtggg
gaaaagcatagaagatatgggcacagggggaaagttcctgaatagaacag
gaatggcttgtgctgtaagattgagaatggacaaatgggacctcatgaaa
ctgcaaagcttctgtaaagcaaaagacaccgtcaataagacaaaaaggcc
accaataggttgggaaaggatctttacctatcccaaatcggataggggac
taataaccaatatgtataaagaacacaagaaggtggacttcagaaaatcc
aataacaccattaaaaagtggggctcagagctaaacaaagaattgtcacc
tgaggaataccgaatggcagagaagcacttgaaaaatgttcagcatcctt
aatcatcagggaaatgcaaatcaaaacaaccctgagattccacttcacac
cagtcagaatggctaagatcaaaaattctggtgacagcagatgctggcaa
ggatgtggagaaaaaggaacatttctccgttgttggtgggattgcaagct
tgtacaaccactctggaaatcaatctggcagttcctcagaaaattggaca
taggactactggaggatcccagaataccactcctgggcatatatccagaa
gatgttccaactggtaagaagcacacatgctccactatgttcatagcagc
cttatttattatagccagaagctggaaatgacccagatgcccctcaacag
aggaatggatacagaaaatgtggtacatttacacaatggagtactactca
gcttttaaaagaatgaatttatgaaattccttgcccaattggttggacct
ggaagtagcatcatactgagtgaggtaccccatcacaaaagaattcacat
gattgtactcactgggtagttgatatatcccagaaactagaatacccaga
tatgaggatacatttgcaaactaagaaactcaagaagactagactgaagt
gtgaactttgcccttctttattgtgaataaaccccagatgagtacgaaca
aatttgagttggaagaatggatgtcatctagacgtgccataaatggatcc
tcatcactatggaagatctacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4688116_4689317
seq2: B6Ng01-064F01.b_45_1214 (reverse)

seq1  CTCCATTGTCTAAACCTGTTGTTTGTATGGTATCACCTGAAATCAAGTGT  50
      ||||| ||| ||||||||||||    ||||| ||||    |||||||| |
seq2  CTCCA-TGT-TAAACCTGTTGT---GATGGT-TCAC--AGAATCAAGT-T  41

seq1  CTCAGTGGAGTAACTGTCTTTTACAAAGTTGGCCTTTGGGCATACCTGTG  100
      | ||  || | ||||||| ||||||||| ||||| |||||||| ||||||
seq2  C-CA--GGGGGAACTGTC-TTTACAAAG-TGGCC-TTGGGCAT-CCTGTG  84

seq1  ATACAGTCATGTCTCGTTGATAACTGGGTAGGAGCACCCAGGAGACTGTG  150
      ||||||||| || ||||  |||||| |||||   |||||| |||||  | 
seq2  ATACAGTCA-GTTTCGT--ATAACT-GGTAGAGCCACCCA-GAGAC--TT  127

seq1  GGAGTTACCATTACCTGAGCAAATGGTCATGGGTGGTATGAGGATAAGAT  200
      |||||||||||   ||||||||||||||||||||||||||||||| ||||
seq2  GGAGTTACCAT--ACTGAGCAAATGGTCATGGGTGGTATGAGGAT-AGAT  174

seq1  CTGAAGATGAACCTACCAGGCAAGTCAGCAAGCACCAATTCTTCATGTTT  250
      ||||||||||| ||||||||||||||||| |||| |||||| ||||||||
seq2  CTGAAGATGAA-CTACCAGGCAAGTCAGC-AGCA-CAATTC-TCATGTTT  220

seq1  TCTGCTGTAATTCCTCAGTACTGAAGGTGGGCCAGGAAGGATGGAGGCCT  300
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TCTGCTGTAATT-CTCAGTACTGAAGGTGGGCCAGGAAGGATGGA-GCCT  268

seq1  GAAAAGAAGATCTCATAGGCACATGCCTCCGTGTCAGAATTCTGGGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGATCTCATAGGCACATGCCTCCGTGTCAGAATTCTGGGAACT  318

seq1  GTTGGGCTTCAGTGACTTTACCCTCCTCCAATCCCAACTGAAATAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTCAGTGACTTTACCCTCCTCCAATCCCAACTGAAATAGAAGT  368

seq1  TTGAAGTGGGATAGTCAACTGGAAGTGGAGCAGGAGGGGTCAAGCCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGGGATAGTCAACTGGAAGTGGAGCAGGAGGGGTCAAGCCCATC  418

seq1  TGTGGCAGGACCTAGGATGGAGTGGTCACCACCTCTGCCTTCTCCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGGACCTAGGATGGAGTGGTCACCACCTCTGCCTTCTCCATTTT  468

seq1  TGTCTCTTCTCTTCAAGTATGGTTACAATCTCAGCTAACTTGGTTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCTCTTCAAGTATGGTTACAATCTCAGCTAACTTGGTTTTGCC  518

seq1  AGAAAGAAGAAGTAGAGGGAGAGGCATTCCATGATCATGCCTTATTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGAAGTAGAGGGAGAGGCATTCCATGATCATGCCTTATTACCA  568

seq1  GTGATGCAGGAGGTTAGTTCCAGCCTATCAATCGCATAGCCTTCCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCAGGAGGTTAGTTCCAGCCTATCAATCGCATAGCCTTCCTATTT  618

seq1  ACAGTTCCCTAGCCTGAAGGCCCAATTCAGTCTGTGTCACTCTGCTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCCTAGCCTGAAGGCCCAATTCAGTCTGTGTCACTCTGCTGCCC  668

seq1  TCACTAAGCCCTGATGCTATCTGGCCATATACAGAGAGGGAAAATGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGCCCTGATGCTATCTGGCCATATACAGAGAGGGAAAATGACAC  718

seq1  CAACAGGGAGCCAGAGAGCCAGGAATGGCTCATATAGTATTTACAGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGAGCCAGAGAGCCAGGAATGGCTCATATAGTATTTACAGAGCC  768

seq1  TTGCCCATGCCACGACACAGGTAAAGGCCATGAACAGAGTGCTGCAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATGCCACGACACAGGTAAAGGCCATGAACAGAGTGCTGCAGTAC  818

seq1  ACCATACTATTGAGCTTCTGTGAGCAGTCACAGCAGGAACAGGAGGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTATTGAGCTTCTGTGAGCAGTCACAGCAGGAACAGGAGGTAGT  868

seq1  AGGCACCAAAGCAGAGATATTGCTCTACTGTCTCCTGGGCATGTAGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAAAGCAGAGATATTGCTCTACTGTCTCCTGGGCATGTAGCAGG  918

seq1  ACCACTTCCAGGACCTTCATGCTGCCCTGGAGAAGACAGTTCATCTGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCCAGGACCTTCATGCTGCCCTGGAGAAGACAGTTCATCTGCTA  968

seq1  CCTGAAGGGTATCTTGGGCTCAACAGTTTAGCAAGAGGTAGACAAGTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGGTATCTTGGGCTCAACAGTTTAGCAAGAGGTAGACAAGTCTT  1018

seq1  TGACCAGAGGTCACCTCTCTGGTCTCCCTTTTTCTTTGTAGCGTATGGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAGGTCACCTCTCTGGTCTCCCTTTTTCTTTGTAGCGTATGGTG  1068

seq1  AGTTAGCAAGTATCTAGTTAAAGCCACTTCTCCATCTCTATGGCATGGGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAAGTATCTAGTTAAAGCCACTTCTCCATCTCTATGGCATGGGT  1118

seq1  GACACCTTACTCATCCTATACATAGGAGGAACTGATGCTTATACAAGAAT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTACTCATCCTATACATAGGAGGAACTGATGCTTATACAAGAAT  1168

seq1  TC  1202
      ||
seq2  TC  1170