BAC Information

Click to search

BAC

Clone NameB6Ng01-065G18
Chromosome6 (Build37)14 (Build37)
Map Location 85,610,157 - 85,610,68598,878,442 - 98,879,490
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G18.bB6Ng01-065G18.g
ACCDH884900DH884901
length9121,038
definitionDH884900|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G18, 5' end.DH884901|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,610,157 - 85,610,685)(98,878,442 - 98,879,490)
sequence
gaattcctgatatttccaagacttttatcatgaatgggcgttggattttg
tcaaatactttctcagcatcttacaaaatgatcatgtggtttttgtcttt
gaatttgtttatatagttaattacattgatggatttctgtatattaaact
atccctgcatccctgggatgaagcctacctggtcatgatggatcatcatt
tggatgtgttcttggattcggtttgcgaaggttttattgagtatttttga
atcgatattcataagaaaaattggtctgaagttctctttctttgttggat
ctttgtgtgttttaggtatcagagtaattgtgacttcatagaatgaattg
ggtagagtaccttctgtttctattttgtggaatagtttgaggagagttgg
aattaggtcttctttgaaggtctgatagaattctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactacatctatttct
ttaggggaaatgggactgttcagatcgttaatctgatactgatttaactt
tggtacctggtatctgtctaggaagttgtccatttcatccaggttttcta
gttttgttgcatatagccttttttgtaggatctgataatgttttgatttt
ctcaggttctgttgttatgacacctttttcatttctgattttgttaatta
gcatactgtccctgtgccctctagttagtctggctaagtgtttatctatc
ttgttgattttcttaaagaaccaagtcctggtatgggttgattctttgaa
cagttcttttggtttccacttgggtttatttcagccctgagtttgattat
ttcctgccatctactcttcttgggtgaatttcttcctttattttctagag
cttctagtgtgc
gaattctacctgcagcccaagatttatgcttttcttcctagctaaacaag
agaggagatcccagaggcatctgtaggagtcctagtgacctgaatggagt
tctgagaagcaaggcttcgaagatttggcagctaaggaaaagggggcaag
cagggagttatttttaatgtcactatgaaacacactggggatgctgtgct
gatccttaaatgacctagtgtgacagtcatacgaagaggatacacagttc
ctcccctcatcttcattgctctggtgttcagatggcagagaacaaagcta
caccacaaaccatgtggcctggcagaaaagagagatgtgatgcctggtca
cctcaagacgaagctgtttcaaggggacggaaacagttgacttttcgtaa
tgaatctttttgtgacaccatcaacacatagttgtaagaaggcccaaaga
agccaagtacccagctgactcgtatttcctacccacgagtctgacttgaa
tggcagaaaggatgataatataaatggtcccctgttttgaatactctagc
tgcatgataaataatgtgtggagatgctaacatttttttttcccttattt
aaactgaatattaatttggttgggcttaggaattcaagtgtaatacttaa
actaaaatattcacatatgataattcccttcggcatttatagtgagaata
tagaaatgtcttctttcatggcctttattaattggtagtttttagttctc
atgtaaaactatttatgaggccatatttaatgtaaaaactctgtaggttc
cctcaacttatgaaaagcttatttctagagaccacccccgcctagggatc
catcccatctgcagacgccaaaccccaacactattgctgctgcaagagtg
cttgctgacagggcctggtgtggctgtttcctgagaagtctcccagcact
gacaatacagatgcagatacttcacagccacagtcagactgagaacttgg
acccattgaagattaggggaaggatgagacctggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85610157_85610685
seq2: B6Ng01-065G18.b_43_577 (reverse)

seq1  CAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGT  50
      ||| |||| ||||| |||||||| || ||||||||||||||||| | |||
seq2  CAGATTAACGATCTGAACAGTCCCATTTCCCCTAAAGAAATAGATGTAGT  50

seq1  CATTAATAGTCTCCCAACCAAAAAAAAAGCCCAGGACCAAATGGGTTTAG  100
       ||||||||||||||| ||  |||||||||||||||||| | ||||||||
seq2  TATTAATAGTCTCCCAGCC--AAAAAAAGCCCAGGACCAGACGGGTTTAG  98

seq1  TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACA  150
      |||||| ||||||||||||||||||||||| ||||| |||  ||| | ||
seq2  TGCAGAATTCTATCAGACCTTCAAAGAAGACCTAATTCCAACTCTCCTCA  148

seq1  AACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTAT  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTAT  198

seq1  GAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCAACAAAGAT  250
      |||| |||||||||||||||||||||| |||| ||||| |||||||||| 
seq2  GAAGTCACAATTACTCTGATACCTAAAACACACAAAGATCCAACAAAGAA  248

seq1  AGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATCCTCA  300
      ||||||||||||||||||||  ||||||||||||||| ||||||| ||||
seq2  AGAGAACTTCAGACCAATTTTTCTTATGAATATCGATTCAAAAATACTCA  298

seq1  ATAAAGTTCTCGCTAACCGAATCCAAGAACACATCAAAACAATCATCCAT  350
      |||||    |||| ||||||||||||||||||||| |||  || ||||||
seq2  ATAAAACCTTCGCAAACCGAATCCAAGAACACATCCAAATGATGATCCAT  348

seq1  CCTGACCAAGTCGGTTTCACCCCAGGGATACCGGGATGGTTCACTATACG  400
      | |||||| || || |||| ||||||||| | ||||| ||| | ||||| 
seq2  CATGACCAGGTAGGCTTCATCCCAGGGATGCAGGGATAGTTTAATATACA  398

seq1  GA--------AATGTAATCCAGTATATAAACAAACTCAAAGACAAAAACC  442
      ||        ||||||||  | |||||||||||| |||||||||||||||
seq2  GAAATCCATCAATGTAATTAACTATATAAACAAATTCAAAGACAAAAACC  448

seq1  ACATGATCATCTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAACAC  492
      |||||||||| | || |||||||||||||| ||||||||||||||||| |
seq2  ACATGATCATTTTGTAAGATGCTGAGAAAGTATTTGACAAAATCCAACGC  498

seq1  CCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  529
      ||||||||||||||||||||||||| |||||||||||
seq2  CCATTCATGATAAAAGTCTTGGAAATATCAGGAATTC  535

seq1: chr14_98878442_98879490
seq2: B6Ng01-065G18.g_66_1103 (reverse)

seq1  CCCTCCAGCTCCTTCACTCCTTCCCCTAATTCCTCCATTGGGGTCCCAGG  50
      |||||||| ||  ||| |||||||||||||  || || | |||||| || 
seq2  CCCTCCAGGTC--TCA-TCCTTCCCCTAAT--CTTCAAT-GGGTCCAAGT  44

seq1  TCTCAGTCTGACTGTTGGCTGTG-AGTATCTGCATCTGTATTGGTCAGGT  99
      |||||||||||||| |||||||| |||||||||||||||||| |||| ||
seq2  TCTCAGTCTGACTG-TGGCTGTGAAGTATCTGCATCTGTATT-GTCA-GT  91

seq1  GCTGGGAGAACTTCTCAGGAAACAGCCACACCAGGCCCTTGTCAGCAAGC  149
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGGGAG-ACTTCTCAGGAAACAGCCACACCAGGCCC-TGTCAGCAAGC  139

seq1  ACTCTTGGCAGCAGCAATAGTGTTGGGGTTTGGCGTCTGCAGATGGGATG  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTT-GCAGCAGCAATAGTGTTGGGGTTTGGCGTCTGCAGATGGGATG  188

seq1  GATCCCTAGGC-GGGGTGGTCTCTAGAAATAAGCTTTTCATAAGTTGAGG  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTAGGCGGGGGTGGTCTCTAGAAATAAGCTTTTCATAAGTTGAGG  238

seq1  GAACCTACAGAGTTTTTACATTAAATATGGCCTCATAAATAGTTTTACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTACAGAGTTTTTACATTAAATATGGCCTCATAAATAGTTTTACAT  288

seq1  GAGAAACTAAAAACTACCAATTAATAAAGGCCATGAAAGAAGACATTTCT  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-AACTAAAAACTACCAATTAATAAAGGCCATGAAAGAAGACATTTCT  337

seq1  ATATTCTCACTATAAATGCCTGAAGGGAATTATCATATGTGAATATTTTA  398
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATTCTCACTATAAATGCC-GAAGGGAATTATCATATGTGAATATTTTA  386

seq1  GTTTAAGTATTACACTTGAATTCCTAAGCCCAACC-AATTAATATTCAGT  447
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTAAGTATTACACTTGAATTCCTAAGCCCAACCAAATTAATATTCAGT  436

seq1  TTAAATAAGGGAAAAAAAAATGTTAGCATCTCCACACATTATTTATCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGGGAAAAAAAAATGTTAGCATCTCCACACATTATTTATCATG  486

seq1  CAGCTAGAGTATTCAAAACAGGGGACCATTTATATTATCATCCTTTCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGTATTCAAAACAGGGGACCATTTATATTATCATCCTTTCTGC  536

seq1  CATTCAAGTCAGACTCGTGGGTAGGAAATACGAGTCAGCTGGGTACTTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGTCAGACTCGTGGGTAGGAAATACGAGTCAGCTGGGTACTTGG  586

seq1  CTTCTTTGGGCCTTCTTACAACTATGTGTTGATGGTGTCACAAAAAGATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGGCCTTCTTACAACTATGTGTTGATGGTGTCACAAAAAGATT  636

seq1  CATTACGAAAAGTCAACTGTTTCCGTCCCCTTGAAACAGCTTCGTCTTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACGAAAAGTCAACTGTTTCCGTCCCCTTGAAACAGCTTCGTCTTGA  686

seq1  GGTGACCAGGCATCACATCTCTCTTTTCTGCCAGGCCACATGGTTTGTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAGGCATCACATCTCTCTTTTCTGCCAGGCCACATGGTTTGTGG  736

seq1  TGTAGCTTTGTTCTCTGCCATCTGAACACCAGAGCAATGAAGATGAGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTGTTCTCTGCCATCTGAACACCAGAGCAATGAAGATGAGGGG  786

seq1  AGGAACTGTGTATCCTCTTCGTATGACTGTCACACTAGGTCATTTAAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTGTATCCTCTTCGTATGACTGTCACACTAGGTCATTTAAGGA  836

seq1  TCAGCACAGCATCCCCAGTGTGTTTCATAGTGACATTAAAAATAACTCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACAGCATCCCCAGTGTGTTTCATAGTGACATTAAAAATAACTCCC  886

seq1  TGCTTGCCCCCTTTTCCTTAGCTGCCAAATCTTCGAAGCCTTGCTTCTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCCCCTTTTCCTTAGCTGCCAAATCTTCGAAGCCTTGCTTCTCA  936

seq1  GAACTCCATTCAGGTCACTAGGACTCCTACAGATGCCTCTGGGATCTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCATTCAGGTCACTAGGACTCCTACAGATGCCTCTGGGATCTCCT  986

seq1  CTCTTGTTTAGCTAGGAAGAAAAGCATAAATCTTGGGCTGCAGGTAGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTAGCTAGGAAGAAAAGCATAAATCTTGGGCTGCAGGTAGAAT  1036

seq1  TC  1049
      ||
seq2  TC  1038