BAC Information

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BAC

Clone NameB6Ng01-068C05
Chromosome1 (Build37)14 (Build37)
Map Location 122,114,135 - 122,115,30923,443,691 - 23,443,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik
Downstream geneSteap3, C1ql2, Marco, En1, AI848258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C05.bB6Ng01-068C05.g
ACCDH886814DH886815
length1,156747
definitionDH886814|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C05, 5' end.DH886815|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,114,135 - 122,115,309)(23,443,691 - 23,443,837)
sequence
gaattcagtattttttattttcttaagagaggatcctgaaggttgaacaa
tctatctgtctgtctgtctatttattttgggacagggtctcatgtatccc
aggatagcctcagactctctaagcagtggaagctgaccttgagctctgat
cctcctgcccccacccccctccccaagagtactgggatggactcaccagc
cctggtttattctgggctggaaatagaattcagggctttgcatgcactag
gcaagcgcactaccgactgagccaaattccagcctcagcagatctttatg
ttaatgaagagcaggctggctgaagcctccgagtggctatgagaatgttt
ccactcttctgattttccaggacacggtgactgtgtcatttgagagtcct
gagaggtgcatcttccgtgttgcatgtggctttgcctctctaaccatttg
gtccttccactttggctgagatctcttctctacgatagatacggtcttaa
atagtgatggtgatgatgagcactgttgacctgttctctaattaattagt
caattaaatcatggtaacagcaaggatggagtccagagctctgagcaagc
taggccagtgctgcgccactgagcagcatccccggccctgttcttgactt
tgatgtgaaatgagacaaatgtgtcagcatctaaatgattacagatggtg
taacaggttaagataaaaatccttccggcttctcttttgtaagaactctc
tctctctttctctctctctctctccctccctccctccctctgcataatag
tcgtattagtctgttttctgcttctataacaaaatacctgaagctcagta
atttataaagaagacaggttttattaacggttttggagtctgacagtcca
tgactggacagctttatggattggggtttgatagctttttggtagatagt
atcatgattgtggaacttgtttggagggagaatctcacgtgagacagaaa
actgacaccagagggagagctgttcttcatgggcatgcgttatatgtgct
atggtcctgttgcttgtgcagatcatgtgatgtgtggttgaaaacagtgg
cgtactatggaggcaaggaaaactctgggtatccaccttgtttttgaagc
aaggtc
gaattcaggaagagttggaaacctcacctgggaactgtgtgcccatctga
ggctcagagctgattacacatctgtttactgcaagtctttgtggaggtga
gtggtgttggttaatattgattatcaagggtctagaaccacctcagacac
aagcttccggggataactagattaggttaggattatcatgaccaagtcaa
ctgatgtggaaaggcccaccacaaatgtggcaggattgttccatggtctg
aggctgtacaaaagaagcaagtgaggtgaacatcagtcatttctctgtgt
cctggctgtgggtgtgacctatccagatacctcacactcctgccttccct
gaggtgataggagagtaccttcaaactgtgatccaaaatgaagttacttt
tgtcagagtacaaaccatttctccatggcaagacatttctgatttcaccg
ctgagcttcgcaggctcatggcaaatgcttcctcacctctagaaacagca
tcatggcaggatctcacacagacactggaggcgggaaagatgggtctgtg
ctctgctactaaccagccacatgaccttatataagatattcaacctctcc
tagtccgtgcttctcatctacaaagttgaggattcataatgcttccctcc
tggggctgttatgaagactttacacactatgtaaaagcatttggtttatt
tttttcatgaatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122114135_122115309
seq2: B6Ng01-068C05.b_51_1206

seq1  GAATTCAGTATTTTTTATTTTCTTAAGAGAGGATCCTGAAGGTTGAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTTTTTATTTTCTTAAGAGAGGATCCTGAAGGTTGAACAA  50

seq1  TCTATCTGTCTGTCTGTCTATTTATTTTGGGACAGGGTCTCATGTATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTCTGTCTGTCTATTTATTTTGGGACAGGGTCTCATGTATCCC  100

seq1  AGGATAGCCTCAGACTCTCTAAGCAGTGGAAGCTGACCTTGAGCTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCCTCAGACTCTCTAAGCAGTGGAAGCTGACCTTGAGCTCTGAT  150

seq1  CCTCCTGCCCCCACCCCCCTCCCCAAGAGTACTGGGATGGACTCACCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCCCCACCCCCCTCCCCAAGAGTACTGGGATGGACTCACCAGC  200

seq1  CCTGGTTTATTCTGGGCTGGAAATAGAATTCAGGGCTTTGCATGCACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTATTCTGGGCTGGAAATAGAATTCAGGGCTTTGCATGCACTAG  250

seq1  GCAAGCGCACTACCGACTGAGCCAAATTCCAGCCTCAGCAGATCTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGCACTACCGACTGAGCCAAATTCCAGCCTCAGCAGATCTTTATG  300

seq1  TTAATGAAGAGCAGGCTGGCTGAAGCCTCCGAGTGGCTATGAGAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAGAGCAGGCTGGCTGAAGCCTCCGAGTGGCTATGAGAATGTTT  350

seq1  CCACTCTTCTGATTTTCCAGGACACGGTGACTGTGTCATTTGAGAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTCTGATTTTCCAGGACACGGTGACTGTGTCATTTGAGAGTCCT  400

seq1  GAGAGGTGCATCTTCCGTGTTGCATGTGGCTTTGCCTCTCTAACCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGCATCTTCCGTGTTGCATGTGGCTTTGCCTCTCTAACCATTTG  450

seq1  GTCCTTCCACTTTGGCTGAGATCTCTTCTCTACGATAGATACGGTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCACTTTGGCTGAGATCTCTTCTCTACGATAGATACGGTCTTAA  500

seq1  ATAGTGATGGTGATGATGAGCACTGTTGACCTGTTCTCTAATTAATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGGTGATGATGAGCACTGTTGACCTGTTCTCTAATTAATTAGT  550

seq1  CAATTAAATCATGGTAACAGCAAGGATGGAGTCCAGAGCTCTGAGCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATCATGGTAACAGCAAGGATGGAGTCCAGAGCTCTGAGCAAGC  600

seq1  TAGGCCAGTGCTGCGCCACTGAGCAGCATCCCCGGCCCTGTTCTTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGTGCTGCGCCACTGAGCAGCATCCCCGGCCCTGTTCTTGACTT  650

seq1  TGATGTGAAATGAGACAAATGTGTCAGCATCTAAATGATTACAGATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAAATGAGACAAATGTGTCAGCATCTAAATGATTACAGATGGTG  700

seq1  TAACAGGTTAAGATAAAAATCCTTCCGGCTTCTCTTTTGTAAGAACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTAAGATAAAAATCCTTCCGGCTTCTCTTTTGTAAGAACTCTC  750

seq1  TCTCTCTTTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTGCATAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTGCATAATAG  800

seq1  TCGTATTAGTCTGTTTTCTGCTTCTATAACAAAATACCTGAAGCTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATTAGTCTGTTTTCTGCTTCTATAACAAAATACCTGAAGCTCAGTA  850

seq1  ATTTATAAAGAAGACAGGTTTTATTAACGGTTTTGGAGTCTGACAGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAGAAGACAGGTTTTATTAACGGTTTTGGAGTCTGACAGTCCA  900

seq1  TGACTGGACAGCTTTATGGATTGGGGTTTTGATAGCTTTTTGGTAGATAG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACTGGACAGCTTTATGGATTGGGG-TTTGATAGCTTTTTGGTAGATAG  949

seq1  TATCATGATTGTGGGAACTTGTTTGGAGGGAGAAATCTCACGTGAGACAG  1000
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TATCATGATTGT-GGAACTTGTTTGGAGGGAG-AATCTCACGTGAGACAG  997

seq1  AAAACTGAACACCAAGAAGGAAGAAGCTGTTCTTTCATGGGCATGCGTTT  1050
      ||||||| ||||| ||| |||   |||||||| |||||||||||||| ||
seq2  AAAACTG-ACACC-AGAGGGA--GAGCTGTTC-TTCATGGGCATGCG-TT  1041

seq1  ATATGTGCTATGTGCATGTTTGCGTGTGTGCAGATCTATGTGTATGTGTG  1100
      ||||||||||||  | ||||   |  |||||||||| ||||| |||||||
seq2  ATATGTGCTATGGTCCTGTT---GCTTGTGCAGATC-ATGTG-ATGTGTG  1086

seq1  GTTTGAGAACATGTGCGTACATATGGAAGGCAGAGGAGAACCTTGGGTAT  1150
      | |||| ||||   |||||| ||||| ||||| |||| |||  |||||||
seq2  G-TTGAAAACAGTGGCGTAC-TATGG-AGGCA-AGGAAAACTCTGGGTAT  1132

seq1  CCACCCTGTTTTTAGAGACAAGGTC  1175
      ||||| ||||||| ||  |||||||
seq2  CCACCTTGTTTTT-GAAGCAAGGTC  1156

seq1: chr14_23443691_23443837
seq2: B6Ng01-068C05.g_581_816 (reverse)

seq1  CACACACACACACACACACACACACACACACATATGTGTGTGTATACATG  50
      ||||||||||||||||||||||||||||||||||  |   || | | |  
seq2  CACACACACACACACACACACACACACACACATACATTCATGAAAAAA--  48

seq1  TATATATAATAT-ATATTATATA-----TAGAGTATATATA---------  85
       ||| |  | ||  | ||| |||     || ||| |  |||         
seq2  -ATAAACCAAATGCTTTTACATAGTGTGTAAAGTCTTCATAACAGCCCCA  97

seq1  ------------TATG------------TGTATAT-ACACACACACAC--  108
                  ||||            |||| || | |  |||  ||  
seq2  GGAGGGAAGCATTATGAATCCTCAACTTTGTAGATGAGAAGCACGGACTA  147

seq1  --------------ACACACATA-----GTGTGTATG---AGT-------  129
                     |  | |||      ||||  ||   |||       
seq2  GGAGAGGTTGAATATCTTATATAAGGTCATGTGGCTGGTTAGTAGCAGAG  197

seq1  ---------------------TTCTGTGTCTGTGTGAGA  147
                           | | ||||||||||||||
seq2  CACAGACCCATCTTTCCCGCCTCCAGTGTCTGTGTGAGA  236