BAC Information

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BAC

Clone NameB6Ng01-069M09
Chromosome14 (Build37)
Map Location 94,081,705 - 94,238,770
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069M09.bB6Ng01-069M09.g
ACCDH887977DH887978
length3161,129
definitionDH887977|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M09, 5' end.DH887978|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,081,705 - 94,082,020)(94,237,621 - 94,238,770)
sequence
atctgttgaagaaaatttaggataatgagtgtggggagaggggaaattac
tacctccctgtgataaatcttattagttgttgcattcagagtgatcattc
tgaataatataaacacatatacacacaaatgataaaaatacactaggcaa
actgtgtgtacatgtatttatttatacataccaatataaatatatatgca
catatttataaaatatttgtataatacaaatataaatatatttttaaata
gtatgcgttatatttattatatgtgtctgtgtgtgtgtgtgtgagtgtgt
gagtgtgtatgtatgt
gaattcaaaattcaaaacatacccaggcttacgcttcccactgccttgct
aacctattttccagggtcattttctttcaagtgcagttagatttttttct
ttctctgtctaactgaagtatgtaccagaggctctggggatttgagttca
ccagtcctgacttttatctagagcaggtatcctaagtgaattttccatct
tgtgaaactcctgcagtgagcccgcagagtagaaaatggagctaagtact
gacagatgagccccatgtccgcgaatggtgaatcagggctggaggtggaa
aaaatatatataatttgctgaacttaaaggatatacctttcacgggtgta
agtccttcacccctacattttctgcttagctccggtgggtagattcaata
ccaatacttctcagagaatataatccttcaccagccatctttacctgtag
cttatttatattcaacaaattccatgttttgttttcccaagatcaaaaaa
ggaaaaaaatacaaccttagtgtagttttctttcaatcctttttcttcct
acactaatgtgacttccttctctaccgtactttacttattttcccattcc
tgccatttaaacgtaaatcaagatggttgttatgatggattagccaagac
atagaaaccacatagctgaagcccctgcatgccctgcctttcacatctga
tacaattacctacaaagttctccatgtcttatttgacttatttcttccta
ttttcaacttttcaattaattgtcaatgtttaaaaactaccaacttccac
tgaaaacggcaacaacaccccattgttgaatggccagccccttcctaaac
tgagtttctgtgccactgtgttggaattttctgactctctttgatcagaa
cgatccctaacattgccttttgtctctgtcacttgaaggcaagattctga
tgctgccattctcaacttacgtcgaatttctctttatgtatttggttttc
ttatccatccctaaagcagcctgattatctgagtttttttttagtagaga
taaggttcagttcctgcagtttaatgaatatgtgtgctacctgagaaatg
tctggcctgtagctcagagtttgtttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94081705_94082020
seq2: B6Ng01-069M09.b_52_367

seq1  ATCTGTTGAAGAAAATTTAGGATAATGAGTGTGGGGAGAGGGGAAATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGAAGAAAATTTAGGATAATGAGTGTGGGGAGAGGGGAAATTAC  50

seq1  TACCTCCCTGTGATAAATCTTATTAGTTGTTGCATTCAGAGTGATCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCTGTGATAAATCTTATTAGTTGTTGCATTCAGAGTGATCATTC  100

seq1  TGAATAATATAAACACATATACACACAAATGATAAAAATACACTAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATATAAACACATATACACACAAATGATAAAAATACACTAGGCAA  150

seq1  ACTGTGTGTACATGTATTTATTTATACATACCAATATAAATATATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGTACATGTATTTATTTATACATACCAATATAAATATATATGCA  200

seq1  CATATTTATAAAATATTTGTATAATACAAATATAAATATATTTTTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATAAAATATTTGTATAATACAAATATAAATATATTTTTAAATA  250

seq1  GTATGCGTTATATTTATTATATGTGTCTGTGTGTGTGTGTGTGAGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCGTTATATTTATTATATGTGTCTGTGTGTGTGTGTGTGAGTGTGT  300

seq1  GAGTGTGTATGTATGT  316
      ||||||||||||||||
seq2  GAGTGTGTATGTATGT  316

seq1: chr14_94237621_94238770
seq2: B6Ng01-069M09.g_69_1197 (reverse)

seq1  ACTAAACAAAC-CTGAGCATCAGGCCAAGCATTTTCTACAGGTAGCACAC  49
      ||||||||||| ||||||  |||||||  || ||||| ||||||||||||
seq2  ACTAAACAAACTCTGAGCTACAGGCCAGACA-TTTCT-CAGGTAGCACAC  48

seq1  ACTAATTTACAATAAAACTGCAGGAAACTTGGAACCTATAATCTTCTACT  99
      |   |||    || |||||||||| ||||  |||||  | ||| ||||||
seq2  A--TATT---CATTAAACTGCAGG-AACT--GAACC--TTATC-TCTACT  87

seq1  AAAAAAAAAAACTTCAGTATATCAAGGCTGCTTTAGGGAATGGATAAGAA  149
      |||||||||    |||| |||   |||||||||||||| ||||||||| |
seq2  AAAAAAAAA---CTCAG-ATAATCAGGCTGCTTTAGGG-ATGGATAAG-A  131

seq1  AAACCAAATACAATAAAGAGAAATTCGACGTAAGTTGAAGAATGGCAGCA  199
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAACCAAATAC-ATAAAGAGAAATTCGACGTAAGTTG-AGAATGGCAGCA  179

seq1  TCAGAATCTTGCCTTCAAGTGACAGAGACAAAAGGCAATGTTAGGGATCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTTGCCTTCAAGTGACAGAGACAAAAGGCAATGTTAGGGATCG  229

seq1  TTCTGATCAAAGAGAGTCAGAAAATTCCAACACAGTGGCACAGAAACTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCAAAGAGAGTCAGAAAATTCCAACACAGTGGCACAGAAACTCA  279

seq1  GTTTAGGGAAGGGGCTGGCCATTCAACAATGGGGTGTTGTTGCCGTTTTC  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTA-GGAAGGGGCTGGCCATTCAACAATGGGGTGTTGTTGCCGTTTTC  328

seq1  AGTGGAAGTTGGTAGTTTTTAAACATTGACAATTAATTGAAAAGTTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGTTGGTAGTTTTTAAACATTGACAATTAATTGAAAAGTTGAAA  378

seq1  ATAGGAAGAAATAAGTCAAATAAGACATGGAGAACTTTGTAGGTAATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAAATAAGTCAAATAAGACATGGAGAACTTTGTAGGTAATTGT  428

seq1  ATCAGATGTGAAAGGCAGGGCATGCAGGGGCTTCAGCTATGTGGTTTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGTGAAAGGCAGGGCATGCAGGGGCTTCAGCTATGTGGTTTCTA  478

seq1  TGTCTTGGCTAATCCATCATAACAACCATCTTGATTTACGTTTAAATGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGCTAATCCATCATAACAACCATCTTGATTTACGTTTAAATGGC  528

seq1  AGGAATGGGAAAATAAGTAAAGTACGGTAGAGAAGGAAGTCACATTAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGGAAAATAAGTAAAGTACGGTAGAGAAGGAAGTCACATTAGTG  578

seq1  TAGGAAGAAAAAGGATTGAAAGAAAACTACACTAAGGTTGTATTTTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAAAAGGATTGAAAGAAAACTACACTAAGGTTGTATTTTTTTC  628

seq1  CTTTTTTGATCTTGGGAAAACAAAACATGGAATTTGTTGAATATAAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGATCTTGGGAAAACAAAACATGGAATTTGTTGAATATAAATAA  678

seq1  GCTACAGGTAAAGATGGCTGGTGAAGGATTATATTCTCTGAGAAGTATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGTAAAGATGGCTGGTGAAGGATTATATTCTCTGAGAAGTATTG  728

seq1  GTATTGAATCTACCCACCGGAGCTAAGCAGAAAATGTAGGGGTGAAGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAATCTACCCACCGGAGCTAAGCAGAAAATGTAGGGGTGAAGGAC  778

seq1  TTACACCCGTGAAAGGTATATCCTTTAAGTTCAGCAAATTATATATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCCGTGAAAGGTATATCCTTTAAGTTCAGCAAATTATATATATTT  828

seq1  TTTCCACCTCCAGCCCTGATTCACCATTCGCGGACATGGGGCTCATCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTCCAGCCCTGATTCACCATTCGCGGACATGGGGCTCATCTGT  878

seq1  CAGTACTTAGCTCCATTTTCTACTCTGCGGGCTCACTGCAGGAGTTTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTAGCTCCATTTTCTACTCTGCGGGCTCACTGCAGGAGTTTCAC  928

seq1  AAGATGGAAAATTCACTTAGGATACCTGCTCTAGATAAAAGTCAGGACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAATTCACTTAGGATACCTGCTCTAGATAAAAGTCAGGACTG  978

seq1  GTGAACTCAAATCCCCAGAGCCTCTGGTACATACTTCAGTTAGACAGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCAAATCCCCAGAGCCTCTGGTACATACTTCAGTTAGACAGAGA  1028

seq1  AAGAAAAAAATCTAACTGCACTTGAAAGAAAATGACCCTGGAAAATAGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAATCTAACTGCACTTGAAAGAAAATGACCCTGGAAAATAGGT  1078

seq1  TAGCAAGGCAGTGGGAAGCGTAAGCCTGGGTATGTTTTGAATTTTGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGCAGTGGGAAGCGTAAGCCTGGGTATGTTTTGAATTTTGAATT  1128

seq1  C  1150
      |
seq2  C  1129