BAC Information

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BAC

Clone NameB6Ng01-070D02
Chromosome14 (Build37)
Map Location 104,434,851 - 104,554,700
singlet/doubletdoublet
Overlap genenone
Upstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D02.bB6Ng01-070D02.g
ACCDH888269DH888270
length1,1011,154
definitionDH888269|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D02, 5' end.DH888270|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,434,851 - 104,435,975)(104,553,564 - 104,554,700)
sequence
gaattcttttcaggtactcagaattaagaatcaatctatttaaactttgt
tgcttacattacatttgcatttctgagatattagggaaatgagcatagtt
attgtatgtgtccacttgaaaaaaacagttggcagtaaaaaaaaaacaaa
aacaaaaacaaaaacaaacaaaaacaccgtttaaataaaatttcctaaga
tctcaagaataaaagatatgctgcccagggaaaagcaaatcactatctag
aaattcttgtgagccaaaatctttttcactgacaaagtaggaatgagcat
gtccacaaaagagcatgctgtttcttgcagaaacagcttatagcagtgta
ttttcttgtaaacaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa
acaaaacagaacaaaacaaaacttgggaactgacaaatgagaataaagac
aaatgacacaaagttaaaactgagaagaaaccaagagaaaaaaaataaaa
ctaaacatggtttgcgtgaagcagtaaaaataaaatatgctttaacagat
gtgcatgtggttgacagttgtctatgttcattcattggtccacactaggc
agtcttctaattctactgattattttgaaattttgaaaagcaattatgga
actattttaaataactgcaacataagagaagacaaatgtatcacaaaatt
aaaagcattacctcatgcagccaatggtccacaatgacttctgtagttag
tgggattggaaggaacttttctgacatattttagcccctgtctaagtctg
aacattagacttagtgacctgcagccacttttttttctttgtcctctcag
tctccagagaccttggctagggtctttttcttgaatttttaggctccctt
atttgtgtggttgcctacacaaatggcctctgcagtggttccatatctaa
attacagtattggatattccatagctataatatctatactatcagtcata
gtttatattaaatctaccatgcacagtgtatactctctgataaaaaaaaa
actaggttgtgacttgtatatttgtattcatagaatatgtttttttgttg
a
gaattcattcaactttcatacttacttctttgagaatgaaattacaccta
ctgctcctatttaagtgtaatgatggtactttctgctgaaatagccaaat
gtctatcaaaagagcacttcacattgggaacacaacacagattttaagct
aagctaaatcattttccactgatactggggagcagagagtaatcagaaaa
cattcaggacataacctctcaacctttgacttgccttggtgtgggtgtga
gcctgcaagagagaattgaagtggctgatttcttttcaacatctttaacc
agggatcttcatttcgaaaggatcttgatgagcaaagaaactttgtggaa
gatgtaatccacaggaatcccatccccatggcttctcacaccatttgggg
tcttgcatttccactttagggttaatttaaatgatttgcttatggattct
ttactaaaacaaggttggcaaatgcactcatctgcaaacctgggcctgta
cttcaccaagtccacgtcttggtatatattctgagtgtgagaaaaagatc
tgaaagattccaaacatccttctcaaatctactcactttctcccatcttc
tagtgagtatgaaatttggctttaattaaggttactttgttgttatttta
acttatgtacatttattgttctactaaggttgtttagtacttgaagttaa
acttatttagtctttaaatttttctctgatttgtcagatttagtatgctg
cttagctagaaaatagaagatgggagttactaaggaagtagccaacatag
atccacaaatttcagtatactgataataataataataataataatttcat
ttgacctataattcacagtgagtttcaagtagccctttttctttactttc
ataatgtgcaaagagttccatcaacaaattcaaacagattcagatgagac
atactaggttaatccctttattcaattaaaagtataatttaagtagtagt
acttaatgctctgacagcaaattatttagatagtgaatcagtgaaaattt
gtaataattcaagattggtaagcaggaagtatgaaactggcattcagatc
tgatttttaagaagcatcacctggcaggcataaccatcacttggcagaca
taca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104434851_104435975
seq2: B6Ng01-070D02.b_45_1145

seq1  GAATTCTTTTCAGGTACTCAGAATTAAGAATCAATCTATTTAAACTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGGTACTCAGAATTAAGAATCAATCTATTTAAACTTTGT  50

seq1  TGCTTACATTACATTTGCATTTCTGAGATATTAGGGAAATGAGCATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATTACATTTGCATTTCTGAGATATTAGGGAAATGAGCATAGTT  100

seq1  ATTGTATGTGTCCACTTGAAAAAAACAGTTGGCAGTAAAAAAAAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTGTCCACTTGAAAAAAACAGTTGGCAGTAAAAAAAAAACAAA  150

seq1  AACAAAAACAAAAACAAACAAAAACACCGTTTAAATAAAATTTCCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAAACAAAAACACCGTTTAAATAAAATTTCCTAAGA  200

seq1  TCTCAAGAATAAAAGATATGCTGCCCAGGGAAAAGCAAATCACTATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAATAAAAGATATGCTGCCCAGGGAAAAGCAAATCACTATCTAG  250

seq1  AAATTCTTGTGAGCCAAAATCTTTTTCACTGACAAAGTAGGAATGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGTGAGCCAAAATCTTTTTCACTGACAAAGTAGGAATGAGCAT  300

seq1  GTCCACAAAAGAGCATGCTGTTTCTTGCAGAAACAGCTTATAGCAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAAAGAGCATGCTGTTTCTTGCAGAAACAGCTTATAGCAGTGTA  350

seq1  TTTTCTTGTAAACAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTAAACAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA  400

seq1  ACAAAACAGAACAAAACAAAACTTGGGAACTGACAAATGAGAATAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAACAAAACAAAACTTGGGAACTGACAAATGAGAATAAAGAC  450

seq1  AAATGACACAAAGTTAAAACTGAGAAGAAACCAAGAGAAAAAAAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACACAAAGTTAAAACTGAGAAGAAACCAAGAGAAAAAAAATAAAA  500

seq1  CTAAACATGGTTTGCGTGAAGCAGTAAAAATAAAATATGCTTTAACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATGGTTTGCGTGAAGCAGTAAAAATAAAATATGCTTTAACAGAT  550

seq1  GTGCATGTGGTTGACAGTTGTCTATGTTCATTCATTGGTCCACACTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGGTTGACAGTTGTCTATGTTCATTCATTGGTCCACACTAGGC  600

seq1  AGTCTTCTAATTCTACTGATTATTTTGAAATTTTGAAAAGCAATTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTAATTCTACTGATTATTTTGAAATTTTGAAAAGCAATTATGGA  650

seq1  ACTATTTTAAATAACTGCAACATAAGAGAAGACAAATGTATCACAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTAAATAACTGCAACATAAGAGAAGACAAATGTATCACAAAATT  700

seq1  AAAAGCATTACCTCATGCAGCCAATGGTCCACAATGACTTCTGTAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTACCTCATGCAGCCAATGGTCCACAATGACTTCTGTAGTTAG  750

seq1  TGGGATTGGAAGGAACTTTTCTGACATATTTTAGCCCCTGTCTAAGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGGAAGGAACTTTTCTGACATATTTTAGCCCCTGTCTAAGTCTG  800

seq1  AACATTAGACTTAGTGACCTGCAGCCACTTTTTTTTCTTTGTCCTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGACTTAGTGACCTGCAGCCACTTTTTTTTCTTTGTCCTCTCAG  850

seq1  TCTCCAGAGACCTTGGCTAGGGTCTTTTTCTTGAATTTTTAGGCTCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGACCTTGGCTAGGGTCTTTTTCTTGAATTTTTAGGCTCCCTT  900

seq1  ATTTGTGTGGTTGCCTACAACAAAATGGCCTCTGCAGTGGTTCCATATCT  950
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  ATTTGTGTGGTTGCCTACA--CAAATGGCCTCTGCAGTGGTTCCATATCT  948

seq1  AAATTACAGTTATTTGGATATTCCATAGCTTAATAAATATCTATACTATC  1000
      ||||||||||   |||||||||||||||||  || |||||||||||||| 
seq2  AAATTACAGT--ATTGGATATTCCATAGCT--AT-AATATCTATACTAT-  992

seq1  CAGTTCATAGGTTTTATTATTAAATTCTACCATTGCACAGTGTATAACTC  1050
      ||| ||||||  |||| ||||||| ||||||| |||||||||||| ||||
seq2  CAG-TCATAG--TTTA-TATTAAA-TCTACCA-TGCACAGTGTAT-ACTC  1035

seq1  TCTTGATAAAAAAAAAACTAAGTTTGTGACTTGTATATTTTGGTATTTTC  1100
      || |||||||||||||||| || |||||||||||||||||  |||  |||
seq2  TC-TGATAAAAAAAAAACT-AGGTTGTGACTTGTATATTT--GTA--TTC  1079

seq1  ATAGAATAATGTTTTTTTTGGTTGA  1125
      ||||||| ||||||||||  |||||
seq2  ATAGAAT-ATGTTTTTTT--GTTGA  1101

seq1: chr14_104553564_104554700
seq2: B6Ng01-070D02.g_66_1219 (reverse)

seq1  ------------------TG--TATGCTTGCCAAGTGATGCTTCTATAAC  30
                        ||  ||||| ||||| ||||||||||| ||| 
seq2  TGTATGTCTGCCAAGTGATGGTTATGCCTGCCAGGTGATGCTTCT-TAAA  49

seq1  AATCAGATCTGGATGCCAGTTTCATACTTCCTTGCTTACCAATC-TGAAT  79
      ||||||||||| ||||||||||||||||||| |||||||||||| |||||
seq2  AATCAGATCTGAATGCCAGTTTCATACTTCC-TGCTTACCAATCTTGAAT  98

seq1  TATTACACATTTTCACTGATTCACTATCTAAATAATTTGCTGTCAGAGCA  129
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAATTTTCACTGATTCACTATCTAAATAATTTGCTGTCAGAGCA  148

seq1  TTAAGTTACTACTACTTAAATTAATACTTTTAATTGAATAAAGGGATTAA  179
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAAG-TACTACTACTTAAATT-ATACTTTTAATTGAATAAAGGGATTAA  196

seq1  CCTAGTATGTCTCATCTGAATCTGTTTGAATTTGTTGATGGAACTCTTTG  229
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATGTCTCATCTGAATCTGTTTGAATTTGTTGATGGAACTCTTTG  246

seq1  CACATTATGAAAGTAAAGAAAAAGGGCTACTTGAAACTCACTGTGAATTA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATGAAAGTAAAGAAAAAGGGCTACTTGAAACTCACTGTGAATTA  296

seq1  TAGGTCAAATGAAATTATTATTATTATTATTATTATCAGTATACTGAAAT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAATGAAATTATTATTATTATTATTATTATCAGTATACTGAAAT  346

seq1  TTGTGGATCTATGTTGGCTACTTCCTTAGTAACTCCCATCTTCTATTTTC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATCTATGTTGGCTACTTCCTTAGTAACTCCCATCTTCTATTTTC  396

seq1  TAGCTAAGCAGCATACTAAATCTGACAAATCAGAGAAAAATTTAAAGACT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGCAGCATACTAAATCTGACAAATCAGAGAAAAATTTAAAGACT  446

seq1  AAATAAGTTTAACTTCAAGTACTAAACAACCTTAGTAGAACAATAAATGT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTAACTTCAAGTACTAAACAACCTTAGTAGAACAATAAATGT  496

seq1  ACATAAGTTAAAATAACAACAAAGTAACCTTAATTAAAGCCAAATTTCAT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTTAAAATAACAACAAAGTAACCTTAATTAAAGCCAAATTTCAT  546

seq1  ACTCACTAGAAGATGGGAGAAAGTGAGTAGATTTGAGAAGGATGTTTGGA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAGAAGATGGGAGAAAGTGAGTAGATTTGAGAAGGATGTTTGGA  596

seq1  ATCTTTCAGATCTTTTTCTCACACTCAGAATATATACCAAGACGTGGACT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAGATCTTTTTCTCACACTCAGAATATATACCAAGACGTGGACT  646

seq1  TGGTGAAGTACAGGCCCAGGTTTGCAGATGAGTGCATTTGCCAACCTTGT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGTACAGGCCCAGGTTTGCAGATGAGTGCATTTGCCAACCTTGT  696

seq1  TTTAGTAAAGAATCCATAAGCAAATCATTTAAATTAACCCTAAAGTGGAA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAAGAATCCATAAGCAAATCATTTAAATTAACCCTAAAGTGGAA  746

seq1  ATGCAAGACCCCAAATGGTGTGAGAAGCCATGGGGATGGGATTCCTGTGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGACCCCAAATGGTGTGAGAAGCCATGGGGATGGGATTCCTGTGG  796

seq1  ATTACATCTTCCACAAAGTTTCTTTGCTCATCAAGATCCTTTCGAAATGA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCTTCCACAAAGTTTCTTTGCTCATCAAGATCCTTTCGAAATGA  846

seq1  AGATCCCTGGTTAAAGATGTTGAAAAGAAATCAGCCACTTCAATTCTCTC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTGGTTAAAGATGTTGAAAAGAAATCAGCCACTTCAATTCTCTC  896

seq1  TTGCAGGCTCACACCCACACCAAGGCAAGTCAAAGGTTGAGAGGTTATGT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCTCACACCCACACCAAGGCAAGTCAAAGGTTGAGAGGTTATGT  946

seq1  CCTGAATGTTTTCTGATTACTCTCTGCTCCCCAGTATCAGTGGAAAATGA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTTTTCTGATTACTCTCTGCTCCCCAGTATCAGTGGAAAATGA  996

seq1  TTTAGCTTAGCTTAAAATCTGTGTTGTGTTCCCAATGTGAAGTGCTCTTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTAGCTTAAAATCTGTGTTGTGTTCCCAATGTGAAGTGCTCTTT  1046

seq1  TGATAGACATTTGGCTATTTCAGCAGAAAGTACCATCATTACACTTAAAT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACATTTGGCTATTTCAGCAGAAAGTACCATCATTACACTTAAAT  1096

seq1  AGGAGCAGTAGGTGTAATTTCATTCTCAAAGAAGTAAGTATGAAAGTTGA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGTAGGTGTAATTTCATTCTCAAAGAAGTAAGTATGAAAGTTGA  1146

seq1  ATGAATTC  1137
      ||||||||
seq2  ATGAATTC  1154