BAC Information

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BAC

Clone NameB6Ng01-071G22
Chromosome14 (Build37)
Map Location 65,535,526 - 65,672,225
singlet/doubletdoublet
Overlap geneHmbox1, LOC100043657, D14Ertd231e, Extl3
Upstream gene2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071G22.bB6Ng01-071G22.g
ACCDH889135DH889136
length1,1461,148
definitionDH889135|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G22, 5' end.DH889136|Mus musculus domesticus DNA, BAC clone: B6Ng01-071G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,535,526 - 65,536,672)(65,671,055 - 65,672,225)
sequence
gaattcatatgtgaagatgaatattgccaggaagaagtgtgtttctaaga
gtagcagggagtgacttcagagactctgaagatgaaactccatgttgata
tgaatccgtggggtaacagacacgaaaccagcataactcatttactatac
cctgtttgtcgtctacctatctcaggagctaggtagtttaattttatgtt
tgatccttatatttttcatacaccttcatgtattcatttgaaattcaaat
gccccacaatgtaggtaaggcaggttttacaaacacttaaacacgggaaa
tttttaattttaaacaaagcaaaataatgtgtaacagagacattttatcc
tacttttttttttttttttttttgggtttttcgagacagggtttctctgt
gtagccctggctgtcctggaactcactttgtagatcgggctggccttgaa
ctcaaaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtg
tgccaccacgcccggcttatcctacttctacttctccaaacgccaccttc
tgtcttcactgaaaatacttctcctgcccattcaccttcccttcactaag
cagcgtcttctgcctcaagttactagcagagttcttactccatcaacttc
gcattccagacaacagactctgctatctattcctcattgcagtggttggg
aaatggaggttgggaagtgttgaaatgtgactgtgtacaaatcaacctgc
cacatctggctttctctgcaaaacagaaaatgatgcctagagctctaacc
taataggacaagcacagatctaactaaacaaagctttagaagctaccaga
cttctgtaacattaagactgtgtgagaatgacactctagaaataaatgtc
atgtacaagggctacagtagacaaagtatttacactaaggggtagcattc
cattcttttcttcatttctttacagtaacttcttttgtggaaagtcaacc
aattaataaaacctaggccaaaggcaccagcttggtggactctttccttt
aatcttaaagtgataaagctccctgcgtgagaaaaacctggataacttgg
aatggagttagcagattcctagttcatgaacctgtctgggtgaact
gaattcaccccacgttaccactttccatgtcctgttgatggttttcttcc
cagggctgaaaatgaaataaactaacttggggtatggtggcagtgggaaa
cttaggtcagggatttggcctgtgacttgtctccccagccccagcagctg
acgcagagctcagtctgtcttggtcatgcacctgccttaagccagttccg
tcttcctaggccctgacacgtgtgctgctgcttgctgtcctctgcctgct
gtcctgacttctctctagatccctcctgccgtagggctggcatggccccc
gggagaccctcaggccagcaggaccaggctgctgcagaacttcactgggt
cttctggaacctgacaccaagggctgcctgggacatctggttcttggcaa
ctcagtgaaggggtcaagactgtttcccaaccttctgtcctctcatcagc
ccttgtagcagtagccctcttcccccgggggagccaaagagtgtggtgtt
ttgcgctaaatatgtggctgctattttatcttttttttttcctctcccag
tattggggatggacgccagagctgtgggtggacatcccgacaatcgctct
gccctgagccctgtccctattgtctcgtttcttttcattgagaggttgta
aatggtgctgtggtacctgataagaaagtcagtctctgtggtaggacccc
ctctgtgggtcactcatgggtatcattgatctgtgtttgagggatagtga
tgtcaagagtgtcctaggggatagccctctgggcctggtgggaacgctca
ctgaaggaccccagcagcaaacattggcagtgactgtacctgagggactc
ttgtcagaggcaagaggcagagacaaagcagttggaccctgcttgtgatt
tgggttttggggtagggacatgcttggaaatgatgtgccactacacgtcc
gtggagcctgcctggtgtttgacgtgttaccatggtcacctctagagcag
aatgctaacacagtcacactcagctactagtctcagcttcagggcaggac
agcttgtttcagattgctctcatctaaggtcaaggccactccacggagtg
agccctcggatgcctcaggcatcactaagctctgtcaggtggccttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65535526_65536672
seq2: B6Ng01-071G22.b_43_1188

seq1  GAATTCATATGTGAAGATGAATATTGCCAGGAAGAAGTGTGTTTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTGAAGATGAATATTGCCAGGAAGAAGTGTGTTTCTAAGA  50

seq1  GTAGCAGGGAGTGACTTCAGAGACTCTGAAGATGAAACTCCATGTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGGAGTGACTTCAGAGACTCTGAAGATGAAACTCCATGTTGATA  100

seq1  TGAATCCGTGGGGTAACAGACACGAAACCAGCATAACTCATTTACTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCGTGGGGTAACAGACACGAAACCAGCATAACTCATTTACTATAC  150

seq1  CCTGTTTGTCGTCTACCTATCTCAGGAGCTAGGTAGTTTAATTTTATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGTCGTCTACCTATCTCAGGAGCTAGGTAGTTTAATTTTATGTT  200

seq1  TGATCCTTATATTTTTCATACACCTTCATGTATTCATTTGAAATTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTATATTTTTCATACACCTTCATGTATTCATTTGAAATTCAAAT  250

seq1  GCCCCACAATGTAGGTAAGGCAGGTTTTACAAACACTTAAACACGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAATGTAGGTAAGGCAGGTTTTACAAACACTTAAACACGGGAAA  300

seq1  TTTTTAATTTTAAACAAAGCAAAATAATGTGTAACAGAGACATTTTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTAAACAAAGCAAAATAATGTGTAACAGAGACATTTTATCC  350

seq1  TACTTTTTTTTTTTTTTTTTTTTGGGTTTTTCGAGACAGGGTTTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTTTTTTTTTTTTTGGGTTTTTCGAGACAGGGTTTCTCTGT  400

seq1  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCGGGCTGGCCTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCGGGCTGGCCTTGAA  450

seq1  CTCAAAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG  500

seq1  TGCCACCACGCCCGGCTTATCCTACTTCTACTTCTCCAAACGCCACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACGCCCGGCTTATCCTACTTCTACTTCTCCAAACGCCACCTTC  550

seq1  TGTCTTCACTGAAAATACTTCTCCTGCCCATTCACCTTCCCTTCACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACTGAAAATACTTCTCCTGCCCATTCACCTTCCCTTCACTAAG  600

seq1  CAGCGTCTTCTGCCTCAAGTTACTAGCAGAGTTCTTACTCCATCAACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTTCTGCCTCAAGTTACTAGCAGAGTTCTTACTCCATCAACTTC  650

seq1  GCATTCCAGACAACAGACTCTGCTATCTATTCCTCATTGCAGTGGTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGACAACAGACTCTGCTATCTATTCCTCATTGCAGTGGTTGGG  700

seq1  AAATGGAGGTTGGGAAGTGTTGAAATGTGACTGTGTACAAATCAACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGTTGGGAAGTGTTGAAATGTGACTGTGTACAAATCAACCTGC  750

seq1  CACATCTGGCTTTCTCTGCAAAACAGAAAATGATGCCTAGAGCTCTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGGCTTTCTCTGCAAAACAGAAAATGATGCCTAGAGCTCTAACC  800

seq1  TAATAGGACAAGCACAGATCTAACTAAACAAAGCTTTAGAAGCTACCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGACAAGCACAGATCTAACTAAACAAAGCTTTAGAAGCTACCAGA  850

seq1  CTTCTGTAACATTAAGACTGTGTGAGAATGACACTCTAGAAATAAATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAACATTAAGACTGTGTGAGAATGACACTCTAGAAATAAATGTC  900

seq1  ATGTACAAGGGCTACAGTAAGACAAAGTATTTACACTAAGGGGTAGCATT  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGTACAAGGGCTACAGT-AGACAAAGTATTTACACTAAGGGGTAGCATT  949

seq1  CCATTC-TCTCTTCATTTCTTTACAGTAACTTC-TTTGTGGAAAGTCAAC  998
      |||||| | |||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTCTTTTCTTCATTTCTTTACAGTAACTTCTTTTGTGGAAAGTCAAC  999

seq1  CCATTAATAAAACCTAGGCCAAAGGCCACCAGCTTGGTGAACTC-TTCCT  1047
      | ||||||||||||||||||||||| ||||||||||||| |||| |||||
seq2  CAATTAATAAAACCTAGGCCAAAGG-CACCAGCTTGGTGGACTCTTTCCT  1048

seq1  TTATTCCTTAAAAGTGATAAAGCTCCCTGCGTGAG-ATAACCT-GATGAC  1095
      ||| ||  | ||||||||||||||||||||||||| | ||||| ||| ||
seq2  TTAATC--TTAAAGTGATAAAGCTCCCTGCGTGAGAAAAACCTGGATAAC  1096

seq1  TTGTGAATGGAGTTAGCAGATCCCTTAGTTTCATGAA-CTGTCTGGGTGA  1144
      ||| ||||||||||||||||| || ||| |||||||| ||||||||||||
seq2  TTG-GAATGGAGTTAGCAGATTCC-TAG-TTCATGAACCTGTCTGGGTGA  1143

seq1  ACT  1147
      |||
seq2  ACT  1146

seq1: chr14_65671055_65672225
seq2: B6Ng01-071G22.g_68_1215 (reverse)

seq1  ACAAGGCCACCCCTGACAGGAGCATTAGGTGGTGGCCTGAGGCATCCCGG  50
      |||||||||  ||||||| |||| ||| ||| | |||||||||||||  |
seq2  ACAAGGCCA--CCTGACA-GAGC-TTA-GTGAT-GCCTGAGGCATCC--G  42

seq1  GGGGCTGTCACTCTGTGG-GTGGCCTTTGACCTTAAGATGAAGAGCAA-C  98
       ||||  |||||| |||| |||||| |||||||| ||||| ||||||| |
seq2  AGGGC--TCACTCCGTGGAGTGGCC-TTGACCTT-AGATG-AGAGCAATC  87

seq1  TGGAAAACAAAGCTGTCCTGGCCCTGGAGCTGAGACTAGGTAGCTGAGTG  148
      ||  |||| |||||||||| |||||| ||||||||||| |||||||||||
seq2  TG--AAAC-AAGCTGTCCT-GCCCTGAAGCTGAGACTA-GTAGCTGAGTG  132

seq1  TGACCTGTGTTAGCAATCTGCTCTAGGAGGTGACCCATGGTAAACAACGT  198
      ||| ||||||||||| ||||||||| ||||||| |||||||||   ||||
seq2  TGA-CTGTGTTAGCATTCTGCTCTA-GAGGTGA-CCATGGTAA--CACGT  177

seq1  CAAACACCAGGCAGGCTCCACGGACGTGTAGTGGCACAATCATTTCCAAG  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAACACCAGGCAGGCTCCACGGACGTGTAGTGGCAC-ATCATTTCCAAG  226

seq1  CATGTCCCTAACCCCAAAACCCAAATCACAAGCAGGGTCCAACTGCTTTG  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCT-ACCCCAAAACCCAAATCACAAGCAGGGTCCAACTGCTTTG  275

seq1  TCTCTGCCTCTTGCCTCTGACAAGAGTCCCTCAGGTACAGTCACTGCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTTGCCTCTGACAAGAGTCCCTCAGGTACAGTCACTGCCAA  325

seq1  TGTTTGCTGCTGGGGTCCTTCAGTGAGCGTTCCCACCAGGCCCAGAGGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGCTGGGGTCCTTCAGTGAGCGTTCCCACCAGGCCCAGAGGGC  375

seq1  TATCCCCTAGGACACTCTTGACATCACTATCCCTCAAACACAGATCAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTAGGACACTCTTGACATCACTATCCCTCAAACACAGATCAATG  425

seq1  ATACCCATGAGTGACCCACAGAGGGGGTCCTACCACAGAGACTGACTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATGAGTGACCCACAGAGGGGGTCCTACCACAGAGACTGACTTTC  475

seq1  TTATCAGGTACCACAGCACCATTTACAACCTCTCAATGAAAAGAAACGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGTACCACAGCACCATTTACAACCTCTCAATGAAAAGAAACGAG  525

seq1  ACAATAGGGACAGGGCTCAGGGCAGAGCGATTGTCGGGATGTCCACCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGGACAGGGCTCAGGGCAGAGCGATTGTCGGGATGTCCACCCAC  575

seq1  AGCTCTGGCGTCCATCCCCAATACTGGGAGAGGAAAAAAAAAAGATAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCGTCCATCCCCAATACTGGGAGAGGAAAAAAAAAAGATAAAA  625

seq1  TAGCAGCCACATATTTAGCGCAAAACACCACACTCTTTGGCTCCCCCGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCACATATTTAGCGCAAAACACCACACTCTTTGGCTCCCCCGGG  675

seq1  GGAAGAGGGCTACTGCTACAAGGGCTGATGAGAGGACAGAAGGTTGGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGCTACTGCTACAAGGGCTGATGAGAGGACAGAAGGTTGGGAA  725

seq1  ACAGTCTTGACCCCTTCACTGAGTTGCCAAGAACCAGATGTCCCAGGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGACCCCTTCACTGAGTTGCCAAGAACCAGATGTCCCAGGCAG  775

seq1  CCCTTGGTGTCAGGTTCCAGAAGACCCAGTGAAGTTCTGCAGCAGCCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGTCAGGTTCCAGAAGACCCAGTGAAGTTCTGCAGCAGCCTGG  825

seq1  TCCTGCTGGCCTGAGGGTCTCCCGGGGGCCATGCCAGCCCTACGGCAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGGCCTGAGGGTCTCCCGGGGGCCATGCCAGCCCTACGGCAGGA  875

seq1  GGGATCTAGAGAGAAGTCAGGACAGCAGGCAGAGGACAGCAAGCAGCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAGAGAGAAGTCAGGACAGCAGGCAGAGGACAGCAAGCAGCAGC  925

seq1  ACACGTGTCAGGGCCTAGGAAGACGGAACTGGCTTAAGGCAGGTGCATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTCAGGGCCTAGGAAGACGGAACTGGCTTAAGGCAGGTGCATGA  975

seq1  CCAAGACAGACTGAGCTCTGCGTCAGCTGCTGGGGCTGGGGAGACAAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGACTGAGCTCTGCGTCAGCTGCTGGGGCTGGGGAGACAAGTC  1025

seq1  ACAGGCCAAATCCCTGACCTAAGTTTCCCACTGCCACCATACCCCAAGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAAATCCCTGACCTAAGTTTCCCACTGCCACCATACCCCAAGTT  1075

seq1  AGTTTATTTCATTTTCAGCCCTGGGAAGAAAACCATCAACAGGACATGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTCATTTTCAGCCCTGGGAAGAAAACCATCAACAGGACATGGA  1125

seq1  AAGTGGTAACGTGGGGTGAATTC  1171
      |||||||||||||||||||||||
seq2  AAGTGGTAACGTGGGGTGAATTC  1148