BAC Information

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BAC

Clone NameB6Ng01-074I20
Chromosome14 (Build37)
Map Location 56,913,368 - 57,090,175
singlet/doubletdoublet
Overlap geneAtp12a, Rnf17
Upstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
Downstream geneCenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074I20.bB6Ng01-074I20.g
ACCDH891367DH891368
length1,113957
definitionDH891367|Mus musculus domesticus DNA, BAC clone: B6Ng01-074I20, 5' end.DH891368|Mus musculus domesticus DNA, BAC clone: B6Ng01-074I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,089,063 - 57,090,175)(56,913,368 - 56,914,201)
sequence
gaattcctcaattgtttttaaaagagataaaaagtccaggttctccatct
gaggagaaagggatatgacactgcagcttaatagaaaatggaagctcaaa
tgttgaatttattacaagtactgctcagaaattcataaacattaactgac
attagatatagatcaatgtggtgttatataatttattttgaacctatttt
attcagaaccagtataaaattactatgtgtagatataaacaaaactaaga
tcccattcaacaaagtaacttactgtatgttcatctagattatgtctgtg
tccatacacatatactcaaacttttgtttttaacaaaacttagtcatact
gtacataaaatttatagtttttattttatgtgtatgggtatgttgcttgt
atgtatgtatgtatgtgcaccatgtgcatgcatgatacccatgaggccag
aagagtgcattagattctcctgcaattggtgtttcagatggttgtgagct
accatgtaggtactggaaaataaacccaggtcctctaggaagcagccagt
gcttttaagcctctccagtctctccaaacctctgtatgcacaatttagtg
accactattttcccattaacactcattttgcttcagtaaatgtttctact
catgtttctaagctatatttagttttctctaaatgatccaaatgattatg
caatccaagattatactatttttctggctgctatctctagaattcataaa
caaactctacaaactagcacagccctcttttcataatattttacagagtt
ggggctagacagatggctcagtggttaagagtgcatgttgctcttgggga
ggccccaggttctgttccagcaatcatgtcaagtagcttacaatcacctg
aactttcagatccaagaggatccatagtttctggcctccccatcacttac
actttcaagcacaccccacatatattaaattaaaaaaaatagaaatgaat
cttaaaaacaccttcttctggatcactgaaatggctcagcaggcaaaggt
gcttggcttgacaaggcttacatcttgctggttaactcgatttttctaga
gccacatgtgggg
gaattcactcaactcttacacaatctggtggcatttagtacattcagaag
actgggaccattgtctcaagtcagttccaagatatttccatcacacagaa
aggaaaactctgtatccaatcattttccactcctccttcccactctagac
cctgaaagattcaagtcgggtatctcccctctccctcctccttctccctc
ctccctttcctttcctctctctctctttttctcatggatttttttaaatg
aaataaaaccatataacatgtggctatctgtctatctgtctgtctgtctg
tctgtctgtctatttatttatctatttatttagtggtagggtctcactat
gtagatctggctgtcctggaactcactataggccaggctagcctcaaact
cacagaattatgcctgcctctgttttccaggtgctgggagcaaaggcaag
taccacaccatgcctggcacatgtgacctcttatgacccagatacaaagg
cttctctaatcaagagaactcctgtaaaggttcaactctgttgtagtatg
attcaggacttcattttttaatggctaaataatattctgcttcttctact
acgtataatacccactatgaatatttcatgtatagatatttgagtgtttt
caataccttgggaatgcacttatgactggaatttctggatcatatggtta
tttcatgtttaacttcttgaacaagtgacaaattgtcttctgcaacaatt
ccatcattttacacacacacacacacacacacacacacacacacacacac
attgttgctctacattgacatagcaatatacagaggttttgttgtgattt
ctgcaaaagcctcgtacttccattaattaacgcatattttcctagctact
ctagtggatgtgaatggtacttagctgtgggtttgcattcccctagtgac
taatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57089063_57090175
seq2: B6Ng01-074I20.b_44_1156 (reverse)

seq1  CCCCACCATGTGGTCCTAGAAAACTCGAGTTAA-CAGCAAGATTGTAAGC  49
      ||||| |||||||  |||||||| ||||||||| |||||||| |||||||
seq2  CCCCA-CATGTGGCTCTAGAAAAATCGAGTTAACCAGCAAGA-TGTAAGC  48

seq1  CTTGTCA--GCAAGCACCTTTGCCTGCTGAGCCATCTCAGTGATCCAGAA  97
      |||||||   ||||||||||||||||||||||||| ||||||||||||||
seq2  CTTGTCAAGCCAAGCACCTTTGCCTGCTGAGCCATTTCAGTGATCCAGAA  98

seq1  GAGGTTGTTTTTTAAGATTCATTTCTA-TTTTTTTAATTTTATATATGTG  146
      || | || ||||||||||||||||||| |||||||||||| |||||||||
seq2  GAAGGTG-TTTTTAAGATTCATTTCTATTTTTTTTAATTTAATATATGTG  147

seq1  GGGTGTGCTTGTAAGTGTAAGTGATGGGGGAGGCCAGAAACTATGGATCC  196
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GGGTGTGCTTGAAAGTGTAAGTGAT-GGGGAGGCCAGAAACTATGGATCC  196

seq1  TCTTGGATCTGGAAGTTCAGGTGATTGTAAGCTACTTGACATGATTGCTG  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATCTGAAAGTTCAGGTGATTGTAAGCTACTTGACATGATTGCTG  246

seq1  GAACAGAACCTGGGGCCTCCCCAAGAGCAACATGCACTCTTAACCACTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACCTGGGGCCTCCCCAAGAGCAACATGCACTCTTAACCACTGA  296

seq1  GCCATCTGTCTAGCCCCAACTCTGTAAAATATTATGAAAAGAGGGCTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGTCTAGCCCCAACTCTGTAAAATATTATGAAAAGAGGGCTGTG  346

seq1  CTAGTTTGTAGAGTTTGTTTATGAATTCTAGAGATAGCAGCCAGAAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGTAGAGTTTGTTTATGAATTCTAGAGATAGCAGCCAGAAAAAT  396

seq1  AGTATAATCTTGGATTGCATAATCATTTGGATCATTTAGAGAAAACTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATCTTGGATTGCATAATCATTTGGATCATTTAGAGAAAACTAAA  446

seq1  TATAGCTTAGAAACATGAGTAGAAACATTTACTGAAGCAAAATGAGTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTAGAAACATGAGTAGAAACATTTACTGAAGCAAAATGAGTGTT  496

seq1  AATGGGAAAATAGTGGTCACTAAATTGTGCATACAGAGGTTTGGAGAGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAATAGTGGTCACTAAATTGTGCATACAGAGGTTTGGAGAGAC  546

seq1  TGGAGAGGCTTAAAAGCACTGGCTGCTTCCTAGAGGACCTGGGTTTATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGCTTAAAAGCACTGGCTGCTTCCTAGAGGACCTGGGTTTATTT  596

seq1  TCCAGTACCTACATGGTAGCTCACAACCATCTGAAACACCAATTGCAGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACCTACATGGTAGCTCACAACCATCTGAAACACCAATTGCAGGA  646

seq1  GAATCTAATGCACTCTTCTGGCCTCATGGGTATCATGCATGCACATGGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAATGCACTCTTCTGGCCTCATGGGTATCATGCATGCACATGGTG  696

seq1  CACATACATACATACATACAAGCAACATACCCATACACATAAAATAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACATACATACAAGCAACATACCCATACACATAAAATAAAAA  746

seq1  CTATAAATTTTATGTACAGTATGACTAAGTTTTGTTAAAAACAAAAGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTTTATGTACAGTATGACTAAGTTTTGTTAAAAACAAAAGTTT  796

seq1  GAGTATATGTGTATGGACACAGACATAATCTAGATGAACATACAGTAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATGTGTATGGACACAGACATAATCTAGATGAACATACAGTAAGT  846

seq1  TACTTTGTTGAATGGGATCTTAGTTTTGTTTATATCTACACATAGTAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTGAATGGGATCTTAGTTTTGTTTATATCTACACATAGTAATT  896

seq1  TTATACTGGTTCTGAATAAAATAGGTTCAAAATAAATTATATAACACCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGGTTCTGAATAAAATAGGTTCAAAATAAATTATATAACACCAC  946

seq1  ATTGATCTATATCTAATGTCAGTTAATGTTTATGAATTTCTGAGCAGTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTATATCTAATGTCAGTTAATGTTTATGAATTTCTGAGCAGTAC  996

seq1  TTGTAATAAATTCAACATTTGAGCTTCCATTTTCTATTAAGCTGCAGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAAATTCAACATTTGAGCTTCCATTTTCTATTAAGCTGCAGTGT  1046

seq1  CATATCCCTTTCTCCTCAGATGGAGAACCTGGACTTTTTATCTCTTTTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCTTTCTCCTCAGATGGAGAACCTGGACTTTTTATCTCTTTTAA  1096

seq1  AAACAATTGAGGAATTC  1113
      |||||||||||||||||
seq2  AAACAATTGAGGAATTC  1113

seq1: chr14_56913368_56914201
seq2: B6Ng01-074I20.g_68_901

seq1  GAATTCACTCAACTCTTACACAATCTGGTGGCATTTAGTACATTCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAACTCTTACACAATCTGGTGGCATTTAGTACATTCAGAAG  50

seq1  ACTGGGACCATTGTCTCAAGTCAGTTCCAAGATATTTCCATCACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACCATTGTCTCAAGTCAGTTCCAAGATATTTCCATCACACAGAA  100

seq1  AGGAAAACTCTGTATCCAATCATTTTCCACTCCTCCTTCCCACTCTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTCTGTATCCAATCATTTTCCACTCCTCCTTCCCACTCTAGAC  150

seq1  CCTGAAAGATTCAAGTCGGGTATCTCCCCTCTCCCTCCTCCTTCTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGATTCAAGTCGGGTATCTCCCCTCTCCCTCCTCCTTCTCCCTC  200

seq1  CTCCCTTTCCTTTCCTCTCTCTCTCTTTTTCTCATGGATTTTTTTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCCTTTCCTCTCTCTCTCTTTTTCTCATGGATTTTTTTAAATG  250

seq1  AAATAAAACCATATAACATGTGGCTATCTGTCTATCTGTCTGTCTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCATATAACATGTGGCTATCTGTCTATCTGTCTGTCTGTCTG  300

seq1  TCTGTCTGTCTATTTATTTATCTATTTATTTAGTGGTAGGGTCTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTATTTATTTATCTATTTATTTAGTGGTAGGGTCTCACTAT  350

seq1  GTAGATCTGGCTGTCCTGGAACTCACTATAGGCCAGGCTAGCCTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTGGCTGTCCTGGAACTCACTATAGGCCAGGCTAGCCTCAAACT  400

seq1  CACAGAATTATGCCTGCCTCTGTTTTCCAGGTGCTGGGAGCAAAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTATGCCTGCCTCTGTTTTCCAGGTGCTGGGAGCAAAGGCAAG  450

seq1  TACCACACCATGCCTGGCACATGTGACCTCTTATGACCCAGATACAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCATGCCTGGCACATGTGACCTCTTATGACCCAGATACAAAGG  500

seq1  CTTCTCTAATCAAGAGAACTCCTGTAAAGGTTCAACTCTGTTGTAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAATCAAGAGAACTCCTGTAAAGGTTCAACTCTGTTGTAGTATG  550

seq1  ATTCAGGACTTCATTTTTTAATGGCTAAATAATATTCTGCTTCTTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGACTTCATTTTTTAATGGCTAAATAATATTCTGCTTCTTCTACT  600

seq1  ACGTATAATACCCACTATGAATATTTCATGTATAGATATTTGAGTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATAATACCCACTATGAATATTTCATGTATAGATATTTGAGTGTTTT  650

seq1  CAATACCTTGGGAATGCACTTATGACTGGAATTTCTGGATCATATGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTTGGGAATGCACTTATGACTGGAATTTCTGGATCATATGGTTA  700

seq1  TTTCATGTTTAACTTCTTGAACAAGTGACAAATTGTCTTCTGCAACAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTAACTTCTTGAACAAGTGACAAATTGTCTTCTGCAACAATT  750

seq1  CCATCATTTTACACACACACACACACACACACACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTTACACACACACACACACACACACACACACACACACACACAC  800

seq1  ATTGTTGCTCTACATTGACATAGCAATATACAGA  834
      ||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTCTACATTGACATAGCAATATACAGA  834