BAC Information

Click to search

BAC

Clone NameB6Ng01-075N12
Chromosome14 (Build37)
Map Location 24,216,411 - 24,348,598
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075N12.bB6Ng01-075N12.g
ACCDH892289DH892290
length3181,055
definitionDH892289|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N12, 5' end.DH892290|Mus musculus domesticus DNA, BAC clone: B6Ng01-075N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,348,281 - 24,348,598)(24,216,411 - 24,217,471)
sequence
cagtccttctgcaagaacaatggttcctaaccattgagccacgtctccag
tccctgtgtaactagtcaaccttcaccttttatcattcagttccttctga
agccaattgccagttctgggctcaggttccccaaatcctgctgtagcccc
cactctttgctccctgctgggcttcagccaagctcacagaactgagcatc
tgcgcagacctcaggaactctgcagcacaagcagaaactattggctcaag
ggccattttgaagacgtctgcagccatttctctgatggtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
gaattctgtaggggacagtttttttttgtttgtttgttttgttttgtttt
gttttgttttttgttttgttttgttttgttttttttcagccagaaattta
cccacaaaaccatggatttctaactacatttaaaaatcttgcaggaaacc
aggtattcattctaggaaagtctgttgtctcacaggatatgggttccgca
actggacaaatcccccactgctgtatatagtccctggcttcacaaggcag
gcagtcctcattagcctttgtttaagcacaatactcccaagatagggcaa
attcttatggcatgctatgtctccaattgtcagttgatactgtgtggcaa
ggagggtaggagctatgtaccaggattggaaagcaccctactggcttcaa
acctacacattggaggcttacaaaattccaattggctttcctatgtaatg
tgaacagtccaagtacttaggtcctagtgatattctgaaaatggatggaa
actgtaaaaagtgcattgatgagtccccttgttacactcttgctaaactt
tctccacaactgttttcttgacttgaggaataatttggaagtctgttatg
ggatcctccacattgcctgtctattgtcctttaatggctcagcactctat
ttaaattggctcctattctctttctgcctcccgtaggcaactgatccttt
gtccaactgggagaatgagtttggtgtcctgtaccaccctcatcctttgc
attattcaacagtggcctttgagccatatttgtgtggccccagtgaactg
ttcaggccaagtaattggtttgctaagtgtcataaaacaaagcaagccaa
aaaacttttcaatgggctccacttgagaaggctgtgacaaatgaaactca
gatgtgaagaaacatggagaaacccactgttccctctaaattacaggaaa
cgtgtgctgtctgactgtagggctctttttcttgatttctgtggggggcc
atggagatgatagaacaacattggcaggtagtttagtatggggttggggg
gaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24348281_24348598
seq2: B6Ng01-075N12.b_49_366 (reverse)

seq1  CACACACACACACACACACACACACACACACCATCAGAGAAATGGCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCATCAGAGAAATGGCTGCA  50

seq1  GACGTCTTCAAAATGGCCCTTGAGCCAATAGTTTCTGCTTGTGCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTCAAAATGGCCCTTGAGCCAATAGTTTCTGCTTGTGCTGCAGA  100

seq1  GTTCCTGAGGTCTGCGCAGATGCTCAGTTCTGTGAGCTTGGCTGAAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAGGTCTGCGCAGATGCTCAGTTCTGTGAGCTTGGCTGAAGCCC  150

seq1  AGCAGGGAGCAAAGAGTGGGGGCTACAGCAGGATTTGGGGAACCTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGCAAAGAGTGGGGGCTACAGCAGGATTTGGGGAACCTGAGCC  200

seq1  CAGAACTGGCAATTGGCTTCAGAAGGAACTGAATGATAAAAGGTGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGCAATTGGCTTCAGAAGGAACTGAATGATAAAAGGTGAAGGT  250

seq1  TGACTAGTTACACAGGGACTGGAGACGTGGCTCAATGGTTAGGAACCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGTTACACAGGGACTGGAGACGTGGCTCAATGGTTAGGAACCATT  300

seq1  GTTCTTGCAGAAGGACTG  318
      ||||||||||||||||||
seq2  GTTCTTGCAGAAGGACTG  318

seq1: chr14_24216411_24217471
seq2: B6Ng01-075N12.g_72_1126

seq1  GAATTCTGTAGGGGACAGTTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGGGGACAGTTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTT  50

seq1  GTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCAGCCAGAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCAGCCAGAAATTTA  100

seq1  CCCACAAAACCATGGATTTCTAACTACATTTAAAAATCTTGCAGGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAACCATGGATTTCTAACTACATTTAAAAATCTTGCAGGAAACC  150

seq1  AGGTATTCATTCTAGGAAAGTCTGTTGTCTCACAGGATATGGGTTCCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCATTCTAGGAAAGTCTGTTGTCTCACAGGATATGGGTTCCGCA  200

seq1  ACTGGACAAATCCCCCACTGCTGTATATAGTCCCTGGCTTCACAAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAAATCCCCCACTGCTGTATATAGTCCCTGGCTTCACAAGGCAG  250

seq1  GCAGTCCTCATTAGCCTTTGTTTAAGCACAATACTCCCAAGATAGGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTCATTAGCCTTTGTTTAAGCACAATACTCCCAAGATAGGGCAA  300

seq1  ATTCTTATGGCATGCTATGTCTCCAATTGTCAGTTGATACTGTGTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGGCATGCTATGTCTCCAATTGTCAGTTGATACTGTGTGGCAA  350

seq1  GGAGGGTAGGAGCTATGTACCAGGATTGGAAAGCACCCTACTGGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAGGAGCTATGTACCAGGATTGGAAAGCACCCTACTGGCTTCAA  400

seq1  ACCTACACATTGGAGGCTTACAAAATTCCAATTGGCTTTCCTATGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACATTGGAGGCTTACAAAATTCCAATTGGCTTTCCTATGTAATG  450

seq1  TGAACAGTCCAAGTACTTAGGTCCTAGTGATATTCTGAAAATGGATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCCAAGTACTTAGGTCCTAGTGATATTCTGAAAATGGATGGAA  500

seq1  ACTGTAAAAAGTGCATTGATGAGTCCCCTTGTTACACTCTTGCTAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAAGTGCATTGATGAGTCCCCTTGTTACACTCTTGCTAAACTT  550

seq1  TCTCCACAACTGTTTTCTTGACTTGAGGAATAATTTGGAAGTCTGTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAACTGTTTTCTTGACTTGAGGAATAATTTGGAAGTCTGTTATG  600

seq1  GGATCCTCCACATTGCCTGTCTATTGTCCTTTAATGGCTCAGCACTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCCACATTGCCTGTCTATTGTCCTTTAATGGCTCAGCACTCTAT  650

seq1  TTAAATTGGCTCCTATTCTCTTTCTGCCTCCCGTAGGCAACTGATCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGGCTCCTATTCTCTTTCTGCCTCCCGTAGGCAACTGATCCTTT  700

seq1  GTCCAACTGGGAGAATGAGTTTGGTGTCCTGTACCACCCTCATCCTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTGGGAGAATGAGTTTGGTGTCCTGTACCACCCTCATCCTTTGC  750

seq1  ATTATTCAACAGTGGCCTTTGAGCCATATTTGTGTGGCCCCAGTGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAACAGTGGCCTTTGAGCCATATTTGTGTGGCCCCAGTGAACTG  800

seq1  TTCAGGCCAAGTAATTAGGTTTGCTAAGTGTCATAAAACAAAGCAAGCCA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCAGGCCAAGTAATT-GGTTTGCTAAGTGTCATAAAACAAAGCAAGCCA  849

seq1  AAAAACTTTTCAATGGGCTCCACTTGAGGAGGCTGTGACAAATGAAACTC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAAACTTTTCAATGGGCTCCACTTGAGAAGGCTGTGACAAATGAAACTC  899

seq1  AGATGTGAAGAAACATGGAGAAACCCCACTGTTCCCTCTAAATTACAGGA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGATGTGAAGAAACATGGAGAAA-CCCACTGTTCCCTCTAAATTACAGGA  948

seq1  AACGTGTGCTGTCTGACTGTAAGGGGCTCTTTTTCCTGGATTTCTGGTGG  1000
      |||||||||||||||||||||  ||||||||||| || ||||||||   |
seq2  AACGTGTGCTGTCTGACTGTA--GGGCTCTTTTT-CTTGATTTCTG--TG  993

seq1  GGGGGCCAT-GAGATGATAGACATACATTGGCAGGGTAGTTAAGTAATGG  1049
      ||||||||| |||||||||||   ||||||||| ||||||| ||||  ||
seq2  GGGGGCCATGGAGATGATAGAACAACATTGGCA-GGTAGTTTAGTATGGG  1042

seq1  GAT-GGGGGAGGT  1061
      | | |||||||||
seq2  GTTGGGGGGAGGT  1055