BAC Information

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BAC

Clone NameB6Ng01-077A24
Chromosome14 (Build37)
Map Location 28,945,580 - 29,070,430
singlet/doubletdoublet
Overlap geneErc2
Upstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A24.bB6Ng01-077A24.g
ACCDH893135DH893136
length1,080164
definitionDH893135|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A24, 5' end.DH893136|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,069,385 - 29,070,430)(28,945,580 - 28,945,743)
sequence
gaattcctcaactagaggatggtcagtaccagtgaaacacagtagccatc
tccttattctctgttggagaggactctggagacacctttccaagcatacc
agatctcaaggatggcaaaggtagggagaaggaagtcagtcaggttagtt
gctgagatatattcaaaactggtgagtggctgtcccaccttaactctgga
agcttttctgtaacaacaggaggtcaccttgagtgatccctagagataaa
gttctagcaaagactgcattgtatgactcagcatgttttcattcatttct
tgacactgaagctggaagtgattctgactagctgaaccatcaaggtatga
atgagaagggtacatggagagaaaagggagagagccagtgagtgagtatt
tggaaggtaatgttactccagtatcaggaaatcctaaacgtccttggaaa
gaccgacatttatatcataatgatctccaggcttaatggaaaaagaagtg
atagttgacatttctagaaaaaaagaaagaaaacactaagttaatcagat
acaggtcatatggcctggaattccccctcattgggaacatactaggaata
atagagtcacaacaaaagaaaagggaatatccacaagctagaggccatat
gagttggcacttactctagtgatccttttacccacggcatctatttctct
attatgttgaaactggctgttaccagctagtgagaactacccttcccatt
ttagagaaaggactgtccctggccatagtaggagcgtttctgctatagaa
ttgataattcataaccaagcaaagatggttttctcttatatttgatccac
agaagtctattgggtccattttcaagtttagcttggacagtgttgcccag
aaattggggaacaccctgtaggatccttgtaatttggaattcaacagcca
acaatacatccagcactgggtgctgtgttcctcctgagtgtactaactca
gttctggtggcaagaaccctactaaagaaaggtggtttaatttgtcctaa
tttgactagaaaccaggaaatagaaagaaa
tatgcacaatctagagacagtggtccagtccaggtggcgagcagcctggc
tatcagtttcaacattttccaaaagatgtcactctaatgctgcagtgggg
aggtgggagggtaggtcagctatgcataccagggattaataataggtagg
cagtccttgttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29069385_29070430
seq2: B6Ng01-077A24.b_48_1127 (reverse)

seq1  ----------TTTCTTTGTTTCTTGTCAAA-TAGGACAAATTAA--CACC  37
                |||| | |||||| |||||| |||||||||||||  ||||
seq2  TTTCTTTCTATTTCCTGGTTTCTAGTCAAATTAGGACAAATTAAACCACC  50

seq1  TATC-TTAGT-GGGTTCTTGC--ACAG-ACTGAGTTAGTACACTCAG--A  80
      | || ||||| ||||||||||   ||| |||||||||||||||||||   
seq2  TTTCTTTAGTAGGGTTCTTGCCACCAGAACTGAGTTAGTACACTCAGGAG  100

seq1  GAACACAGCACCCAGTGCT-GATGTA-TGTTGGCTGTTGAATTCC-AATT  127
      ||||||||||||||||||| |||||| |||||||||||||||||| ||||
seq2  GAACACAGCACCCAGTGCTGGATGTATTGTTGGCTGTTGAATTCCAAATT  150

seq1  AC-AGGAT-CTACA-GGTGTTCCC--AATTCTGGGCAACACTGTCC-AGC  171
      || ||||| ||||| |||||||||  | |||||||||||||||||| |||
seq2  ACAAGGATCCTACAGGGTGTTCCCCAATTTCTGGGCAACACTGTCCAAGC  200

seq1  T-AACTTG-AAATGGA-CCAATAGACTTCTGTGGATCAAATATAAGAG-A  217
      | |||||| ||||||| ||||||||||||||||||||||||||||||| |
seq2  TAAACTTGAAAATGGACCCAATAGACTTCTGTGGATCAAATATAAGAGAA  250

seq1  AACCATCTTTGCTTGGTTATG-ATTATCAATTCTATAGCAGAAACGCTCC  266
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACCATCTTTGCTTGGTTATGAATTATCAATTCTATAGCAGAAACGCTCC  300

seq1  TACTATGGCCAGGGACAGTCCTTTCTCTAAAATGGGAAGGGTAGTTCTCA  316
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGCCAGGGACAGTCCTTTCTCTAAAATGGGAAGGGTAGTTCTCA  350

seq1  CTAGCTGGTAACAGCCAGTTTCAACATAATAGAGAAATAGATGCCGTGGG  366
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGTAACAGCCAGTTTCAACATAATAGAGAAATAGATGCCGTGGG  400

seq1  TAAAAGGATCACTAGAGTAAGTGCCAACTCATATGGCCTCTAGCTTGTGG  416
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGATCACTAGAGTAAGTGCCAACTCATATGGCCTCTAGCTTGTGG  450

seq1  ATATTCCCTTTTCTTTTGTTGTGACTCTATTATTCCTAGTATGTTCCCAA  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTTTTCTTTTGTTGTGACTCTATTATTCCTAGTATGTTCCCAA  500

seq1  TGAGGGGGAATTCCAGGCCATATGACCTGTATCTGATTAACTTAGTGTTT  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGAATTCCAGGCCATATGACCTGTATCTGATTAACTTAGTGTTT  550

seq1  TCTTTCTTTTTTTCTAGAAATGTCAACTATCACTTCTTTTTCCATTAAGC  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTTCTAGAAATGTCAACTATCACTTCTTTTTCCATTAAGC  600

seq1  CTGGAGATCATTATGATATAAATGTCGGTCTTTCCAAGGACGTTTAGGAT  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATCATTATGATATAAATGTCGGTCTTTCCAAGGACGTTTAGGAT  650

seq1  TTCCTGATACTGGAGTAACATTACCTTCCAAATACTCACTCACTGGCTCT  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATACTGGAGTAACATTACCTTCCAAATACTCACTCACTGGCTCT  700

seq1  CTCCCTTTTCTCTCCATGTACCCTTCTCATTCATACCTTGATGGTTCAGC  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTCTCTCCATGTACCCTTCTCATTCATACCTTGATGGTTCAGC  750

seq1  TAGTCAGAATCACTTCCAGCTTCAGTGTCAAGAAATGAATGAAAACATGC  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAATCACTTCCAGCTTCAGTGTCAAGAAATGAATGAAAACATGC  800

seq1  TGAGTCATACAATGCAGTCTTTGCTAGAACTTTATCTCTAGGGATCACTC  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATACAATGCAGTCTTTGCTAGAACTTTATCTCTAGGGATCACTC  850

seq1  AAGGTGACCTCCTGTTGTTACAGAAAAGCTTCCAGAGTTAAGGTGGGACA  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACCTCCTGTTGTTACAGAAAAGCTTCCAGAGTTAAGGTGGGACA  900

seq1  GCCACTCACCAGTTTTGAATATATCTCAGCAACTAACCTGACTGACTTCC  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCACCAGTTTTGAATATATCTCAGCAACTAACCTGACTGACTTCC  950

seq1  TTCTCCCTACCTTTGCCATCCTTGAGATCTGGTATGCTTGGAAAGGTGTC  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTACCTTTGCCATCCTTGAGATCTGGTATGCTTGGAAAGGTGTC  1000

seq1  TCCAGAGTCCTCTCCAACAGAGAATAAGGAGATGGCTACTGTGTTTCACT  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTCCTCTCCAACAGAGAATAAGGAGATGGCTACTGTGTTTCACT  1050

seq1  GGTACTGACCATCCTCTAGTTGAGGAATTC  1046
      ||||||||||||||||||||||||||||||
seq2  GGTACTGACCATCCTCTAGTTGAGGAATTC  1080

seq1: chr14_28945580_28945743
seq2: B6Ng01-077A24.g_75_238

seq1  TATGCACAATCTAGAGACAGTGGTCCAGTCCAGGTGGCGAGCAGCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAATCTAGAGACAGTGGTCCAGTCCAGGTGGCGAGCAGCCTGGC  50

seq1  TATCAGTTTCAACATTTTCCAAAAGATGTCACTCTAATGCTGCAGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTCAACATTTTCCAAAAGATGTCACTCTAATGCTGCAGTGGGG  100

seq1  AGGTGGGAGGGTAGGTCAGCTATGCATACCAGGGATTAATAATAGGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGGGTAGGTCAGCTATGCATACCAGGGATTAATAATAGGTAGG  150

seq1  CAGTCCTTGTTCCT  164
      ||||||||||||||
seq2  CAGTCCTTGTTCCT  164