BAC Information

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BAC

Clone NameB6Ng01-077I04
Chromosome14 (Build37)
Map Location 103,376,942 - 103,377,985
singlet/doubletsinglet
Overlap geneKctd12
Upstream geneLOC545567, LOC669278
Downstream geneLOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I04.bB6Ng01-077I04.g
ACCDH893463DH893464
length1,2881,052
definitionDH893463|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I04, 5' end.DH893464|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaccccagacacaggagaaaacagttgtgtgaacctgaggacc
aggtaaccagcatgtggcatgacttacaatgaaacaagcattattaatta
agatataagctagtctaggaacagagccaaagtcataaaactaagcattt
attcatatataagaaatctgagagtcatttttttctgggaacaaagtaga
gaaggagaaaatacaaggtcatgaatggattaactataagattctgtccc
ccaaaaatgagcttttaataaaaattatgagtatatatgtgacatcaatt
ctgaacacaggtaactaataactattttacagaattctttaataaatttc
ataaaaatatccaagccaaaagcttcaaagttcatgaatgatcattactg
gcttatattatttatttttggttatgagatcataattaaagccatggagc
catattttgaaaaatgacatttcaagaaacagagttcgacttctcagtgg
agactctaaaagttaaaagcgcctggacagagttctactgaccacaggtg
ccagcctacactactatacccagcaaaactttcaatcaccacagatggag
aaaattagcccatgataaagccaaatttaaacaaagtctgtctatatagc
cagccctacagaaggtgctagaaggaatattgcaacctaaggaggttaat
tacacccatgaagacacaggaaataatctcacaccagcaaaatcaaaaga
agggaggttcacacacatcaccattatcaacaataacaagaaaataacag
gcatcaataatcactgatgtagaaattgtaatatctgacaaaatagactt
caaataaaaactaagaagagatagaaaaggacactacattactcatcaaa
gtaaaaattaacaagaggacattgcatcaatttagcattctatgctcaga
acacacggtattgtaattgtaagagaaacactactagggctgaaatcaca
tattgaccctcacacctgatgtggaaaacttcagttatgccacttctcac
caacaagcaggtctcttagacaagaacttagctgaacagaaattgtggcg
ctaacaaatgtctatatctataaatagacctaacaagctatagaaaattt
ctccaaaaacaaatcaatttcttttttattagcatctcaagaaccctttg
cgaatgttaacggtatctaggttacaaagaaaagtgaaataacttctgcg
tctcaatcgaacgaactaaatatgaaccattatgcgtc
gaattcacttccttcactcaatatttttctaaatatttgtatagctcatt
ttacatataggagtacaaaaattatttgaatgctagattggaatttatca
taatatgaagagttaaaaatttatcaaagcttcgtaatacatggctttaa
cgtaataactgcattccatggaaacggccatagaaattagaccacgttgt
aagcactgccagttgtctctgggtattggcacatcatacatctccccgga
gaagcagcaggtatacacacatatgattctgctttgaaaaagaagacaat
tggggctaaaattatcattttgctagcaactgaacaaaaacaaataagac
acactagaataaaaacagtattaaaggggaaatttctcacacctgcaagg
tatattttccattacatgtttgaaaatctagaacgaatgtggtttgtaat
ccacacgtattaaaataaaaacagacatatcaaacatctgatagacaagc
atggaacctgggacctgttttgttttgtttttttacaaccacagagactg
tcaacactttttaaaaaaattacttatttaaacctaatgtcattccatta
tttatgagcatcaaatggtaattttgatcaacatatgcaaatgattgcct
ctctgagatatattaatgcagccgtgaatatctgagtagttttataatat
tcttctgggtcattttcaaagatactgatgagagaggctccactgtttgg
tacagtcatcaaatttcacaggtgctgaccgagatttcagaacattttta
taagccctaaggttttcttctacaacccaaagtgcatggagaggaaagga
cccaacgacatcagccttgcttcgtcatacttacctatcatataatgaga
tgactgctcagacttacttggtgctgaaagcacttagtttttttgctttg
tctccttacagtatgagggcccgtcccctccaggaagaaggttcaatgta
ctgtcccttatactaatggcccattctttaacaggcagccaggtatggtg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103376942_103377985
seq2: B6Ng01-077I04.g_68_1119

seq1  GAATTCACTTCCTTCACTCAATATTTTTCTAAATATTTGTATAGCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCTTCACTCAATATTTTTCTAAATATTTGTATAGCTCATT  50

seq1  TTACATATAGGAGTACAAAAATTATTTGAATGCTAGATTGGAATTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATAGGAGTACAAAAATTATTTGAATGCTAGATTGGAATTTATCA  100

seq1  TAATATGAAGAGTTAAAAATTTATCAAAGCTTCGTAATACATGGCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAAGAGTTAAAAATTTATCAAAGCTTCGTAATACATGGCTTTAA  150

seq1  CGTAATAACTGCATTCCATGGAAACGGCCATAGAAATTAGACCACGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATAACTGCATTCCATGGAAACGGCCATAGAAATTAGACCACGTTGT  200

seq1  AAGCACTGCCAGTTGTCTCTGGGTATTGGCACATCATACATCTCCCCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGCCAGTTGTCTCTGGGTATTGGCACATCATACATCTCCCCGGA  250

seq1  GAAGCAGCAGGTATACACACATATGATTCTGCTTTGAAAAAGAAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCAGGTATACACACATATGATTCTGCTTTGAAAAAGAAGACAAT  300

seq1  TGGGGCTAAAATTATCATTTTGCTAGCAACTGAACAAAAACAAATAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTAAAATTATCATTTTGCTAGCAACTGAACAAAAACAAATAAGAC  350

seq1  ACACTAGAATAAAAACAGTATTAAAGGGGAAATTTCTCACACCTGCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAATAAAAACAGTATTAAAGGGGAAATTTCTCACACCTGCAAGG  400

seq1  TATATTTTCCATTACATGTTTGAAAATCTAGAACGAATGTGGTTTGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCCATTACATGTTTGAAAATCTAGAACGAATGTGGTTTGTAAT  450

seq1  CCACACGTATTAAAATAAAAACAGACATATCAAACATCTGATAGACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTATTAAAATAAAAACAGACATATCAAACATCTGATAGACAAGC  500

seq1  ATGGAACCTGGGACCTGTTTTGTTTTGTTTTTTTACAACCACAGAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCTGGGACCTGTTTTGTTTTGTTTTTTTACAACCACAGAGACTG  550

seq1  TCAACACTTTTTAAAAAAATTACTTA-TTAAACCTAATGTCATTCCATTA  599
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAACACTTTTTAAAAAAATTACTTATTTAAACCTAATGTCATTCCATTA  600

seq1  TTTATGAGCATCAAATGGTAA-TTTGATCAACATATGCAAATGATTGCCT  648
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTATGAGCATCAAATGGTAATTTTGATCAACATATGCAAATGATTGCCT  650

seq1  CTCTGAGATAGATTAATGCAGCCGTGAATATCTGAGTAG-TTTATAATAT  697
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGAGATATATTAATGCAGCCGTGAATATCTGAGTAGTTTTATAATAT  700

seq1  TCTTCTGGGTCA-TTTCAAAGATACTGATGAGAGAGGCTCCACTGTTTGG  746
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGTCATTTTCAAAGATACTGATGAGAGAGGCTCCACTGTTTGG  750

seq1  TACAGTCATCAAA-TTCACAGGTGCTGACCGAGATTTCAGAACA-TTTTA  794
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TACAGTCATCAAATTTCACAGGTGCTGACCGAGATTTCAGAACATTTTTA  800

seq1  TAAGCCCTAAGGGTTTCTTCTACAACCCAAAGTGCATGGAGAGGAAAGGA  844
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCTAAGGTTTTCTTCTACAACCCAAAGTGCATGGAGAGGAAAGGA  850

seq1  CCCAACGACATCAGCCTGGCTCAGTCATACTTACCTATCATATAATGAGA  894
      ||||||||||||||||| |||  |||||||||||||||||||||||||||
seq2  CCCAACGACATCAGCCTTGCTTCGTCATACTTACCTATCATATAATGAGA  900

seq1  TGACTGCTCAGACTTAACTTGG-GCTGAAAAGCACTAAGTTTTTATGCAT  943
      ||||||||||||||| |||||| |||| |||||||| ||||||| ||| |
seq2  TGACTGCTCAGACTT-ACTTGGTGCTG-AAAGCACTTAGTTTTTTTGCTT  948

seq1  TG-CCCCTAACAGCA-GAGGGCACAGTCACTCCCAGGAAGA--GGTCCAT  989
      || | ||| |||| | |||||| | ||| |  |||||||||  | || ||
seq2  TGTCTCCTTACAGTATGAGGGC-CCGTCCCCTCCAGGAAGAAGGTTCAAT  997

seq1  GTACTGTCCCTTATACTAATGGCCCAATCTTTAACAGGCCAGCCA-GTAT  1038
      |||||||||||||||||||||||||| ||||||||||| |||||| ||||
seq2  GTACTGTCCCTTATACTAATGGCCCATTCTTTAACAGG-CAGCCAGGTAT  1046

seq1  GGTGGA  1044
      ||||||
seq2  GGTGGA  1052