BAC Information

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BAC

Clone NameB6Ng01-077N20
Chromosome14 (Build37)
Map Location 37,958,666 - 37,959,772
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N20.bB6Ng01-077N20.g
ACCDH893727DH893728
length1,1371,087
definitionDH893727|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N20, 5' end.DH893728|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggagagctagagaaagtacccaagagctaaagggatcttcaccctatag
tggacacatatgactaccagtaccctgagctctgactctagctgcatatg
ttatcaaagatgctagtcgcatcactgaaagaaaggcccattgaaacgcg
actttggtgtccgttacagggacgctcaagcaaaagg
gaattctgagggccgggtgcttatctaagtcagcagagcatctggttaac
atttaacaggtcagaagggcgggagatagggaggcgccaggccagtctgg
acattcttgtatgtcttccctatctttatggctagcaaggttcctgggat
gactttacagcctttgttctatgctctaggccgaaaaagccttcctaact
agcaagccgcatgagtcatggaccttgatttttaattttctttcattccc
ctcttcttctactaagtaattctaatcttagaatgttacaaatctatatc
tctatgtggagaatagaaatcatattcttttctatcttaactataggttg
gtattgagcagaggaccataaactgtactgtatttactctatctttaaca
tgggccaaaggttaagaacaaaaacagaataagaaagaagagtaaacatg
actaggcagggacccttttagtgaggcttgagggtctgggcatgatgcag
gtgtacgtagattagatctccgactggaactggtgagatgtctttggggt
acctggctcatttgctgtagccagttttgaccagacttctttctgcacca
cctgcaagccttttaacttagcatacagatcattattataacaaaatatg
ggttcaaacacatcatttaagacagttatgggcatgggagctccataaag
aatcacaaaaagagtaaggctgaattaagagggagtattttcagttctaa
atagggcaaggggaaggagcaccaagtctgtgccagtctctatggttaat
tttgtcagagcctcttttagagctctattcatcctctctacctgtcctga
gctttggggcctgtatgtacaatgtaacttctaatcaatctctaatatct
tggccagtccctgacttacctgggcaacaaggcaggtccgttaccacact
tttaatttttttggccccaagctcaaacaggagcatatttcatctactag
ttgtctgctgggactccccatatcatggattcaggtcgttgctctttcca
cttcagacggatcagtcagaacctcagtcagccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37958666_37959772
seq2: B6Ng01-077N20.g_66_1152

seq1  GAATTCTGAGGGCCGGGTGCTTATCTAAGTCAGCAGAGCATCTGGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGGCCGGGTGCTTATCTAAGTCAGCAGAGCATCTGGTTAAC  50

seq1  ATTTAACAGGTCAGAAGGGCGGGAGATAGGGAGGCGCCAGGCCAGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAGGTCAGAAGGGCGGGAGATAGGGAGGCGCCAGGCCAGTCTGG  100

seq1  ACATTCTTGTATGTCTTCCCTATCTTTATGGCTAGCAAGGTTCCTGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGTATGTCTTCCCTATCTTTATGGCTAGCAAGGTTCCTGGGAT  150

seq1  GACTTTACAGCCTTTGTTCTATGCTCTAGGCCGAAAAAGCCTTCCTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACAGCCTTTGTTCTATGCTCTAGGCCGAAAAAGCCTTCCTAACT  200

seq1  AGCAAGCCGCATGAGTCATGGACCTTGATTTTTAATTTTCTTTCATTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCGCATGAGTCATGGACCTTGATTTTTAATTTTCTTTCATTCCC  250

seq1  CTCTTCTTCTACTAAGTAATTCTAATCTTAGAATGTTACAAATCTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCTACTAAGTAATTCTAATCTTAGAATGTTACAAATCTATATC  300

seq1  TCTATGTGGAGAATAGAAATCATATTCTTTTCTATCTTAACTATAGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGGAGAATAGAAATCATATTCTTTTCTATCTTAACTATAGGTTG  350

seq1  GTATTGAGCAGAGGACCATAAACTGTACTGTATTTACTCTATCTTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGCAGAGGACCATAAACTGTACTGTATTTACTCTATCTTTAACA  400

seq1  TGGGCCAAAGGTTAAGAACAAAAACAGAATAAGAAAGAAGAGTAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAAGGTTAAGAACAAAAACAGAATAAGAAAGAAGAGTAAACATG  450

seq1  ACTAGGCAGGGACCCTTTTAGTGAGGCTTGAGGGTCTGGGCATGATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAGGGACCCTTTTAGTGAGGCTTGAGGGTCTGGGCATGATGCAG  500

seq1  GTGTACGTAGATTAGATCTCCGACTGGAACTGGTGAGATGTCTTTGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGTAGATTAGATCTCCGACTGGAACTGGTGAGATGTCTTTGGGGT  550

seq1  ACCTGGCTCATTTGCTGTAGCCAGTTTTGACCAGACTTCTTTCTGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTCATTTGCTGTAGCCAGTTTTGACCAGACTTCTTTCTGCACCA  600

seq1  CCTGCAAGCCTTTTAACTTAGCATACAGATCATTATTATAACAAAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCCTTTTAACTTAGCATACAGATCATTATTATAACAAAATATG  650

seq1  GGTTCAAACACATCATTTAAGACAGTTATGGGCATGGGAGCTCCATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAACACATCATTTAAGACAGTTATGGGCATGGGAGCTCCATAAAG  700

seq1  AATCACAAAAAGAGTAAGGCTGAATTAAGAGGGAGTATTTTCAGTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAAAGAGTAAGGCTGAATTAAGAGGGAGTATTTTCAGTTCTAA  750

seq1  ATAGGGCAAGGGGAAGGAGCACCAAGTCTGTGCCAGTCTCTATGGTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCAAGGGGAAGGAGCACCAAGTCTGTGCCAGTCTCTATGGTTAAT  800

seq1  TTTGTCAGAGCCTCTTTTAGAGCTCTATTCATCCTCTCTACCTGTCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAGCCTCTTTTAGAGCTCTATTCATCCTCTCTACCTGTCCTGA  850

seq1  GCTTTGGGGCCTGTATGTACAATGTAACTTCTAATCAATCTCTAATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGGCCTGTATGTACAATGTAACTTCTAATCAATCTCTAATATCT  900

seq1  TGGCCAGTCCCTGACTTACCTGGGCAACAAAGGCAGGTCCGTTAACCACA  950
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TGGCCAGTCCCTGACTTACCTGGGCAAC-AAGGCAGGTCCGTT-ACCACA  948

seq1  CCTTTTAATTTTTTTTGGCCCCCAAGCTCAAACAAGGAGCATAATTTCAT  1000
       ||||||||||||||  | |||||||||||||| |||||||| |||||||
seq2  -CTTTTAATTTTTTT--GGCCCCAAGCTCAAAC-AGGAGCAT-ATTTCAT  993

seq1  CCTTAACTAGTTTGTCCTGCTGGGACTCCCCATATCATGGATTCCAGGTC  1050
      |    ||||| |||| ||||||||||||||||||||||||||| ||||||
seq2  C---TACTAG-TTGT-CTGCTGGGACTCCCCATATCATGGATT-CAGGTC  1037

seq1  GTCTTGCCTCTTTCAACCTTTCAGACAGATCCAGTCAGAACTTCAGTCAA  1100
      |  ||| ||||||| ||  ||||||| ||| |||||||||| |||||| |
seq2  G--TTG-CTCTTTCCAC--TTCAGACGGAT-CAGTCAGAACCTCAGTC-A  1080

seq1  GCCCTGA  1107
      |||||||
seq2  GCCCTGA  1087