BAC Information

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BAC

Clone NameB6Ng01-077P18
Chromosome14 (Build37)
Map Location 94,133,500 - 94,286,652
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P18.bB6Ng01-077P18.g
ACCDH893812DH893813
length1,1631,074
definitionDH893812|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P18, 5' end.DH893813|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,285,480 - 94,286,652)(94,133,500 - 94,134,568)
sequence
gaattcagctttaaaatcgttgcctctgattcggggaagcccagtttgaa
tcagactgccctggtaagggttaagctcgaggatgaaaatgacaacccac
caattttcaaccagcctgtaattgagctgtcagtttctgaaaacaaccga
cgtgggttatacttaacaactattagtgctacagatgaagacagtggaaa
aaatgcagacattgtttatcagcttggaccgaatgcctccttctttgatc
tggacagaaagacaggagttttgacagcctccagagtctttaacagggag
gaacaagagcggttcatttttacagtaactgccagggacaatgggacccc
tcccctccagagccaagcagcagtgatagttactgttctggatgagaatg
acaatagccccaagtttactcataatcactttcagttttttgtgtctgag
aatctgccaaagtatagtactgtgggggtaatcacagtgacagacgaaga
cgctggagagaataaagctgtgactctttccattctaaatgacaatgaaa
attttgtgttggatccctattcaggagtcataaagtccaatgtctccttt
gatagagagcagcagagttcctacacgtttgacgtcaaagccaccgacgg
gggacagccaccacggtcctctactgcaaaagtaactatcaatgtcatgg
atgtcaatgacaatagtccagttgtcatttctccaccatccaacacctcc
tttaagttggtgcccctctcagccattcctggttctgtggttgctgaagt
gtttgcggtggatattgacaccggaatgaatgcagaactcaagtatacca
tagtgagcgggaacaacaagggattatttcggattgatccagtaacaggc
aatatcaccttagaagagaagccagcacctactgatgtgggcctgcaccg
tcttgtgtcacataagtgacctggggtaccctaaggcttgcacactctcg
tgctggtatttctttatgtgacgacactgctgaaacacctcatattatat
atgactgatccgtaggactatgaaccccactggacggaacataggagatt
tggtcacctatcagaacgaaggactatctcacatactgatggcaatcgtt
gctggggaccatg
gaattcacttccttgaatttgtcttttgggcagaatccaaaagcaaaggg
actaaaataaggaaatcaattcctgcaaaggagtgtctgcaaagcccagc
taaatgaactgatgtaatctcagtcctggactcgcaggcagtaaccggga
gggaattctcattactctgaatctggaggagggaaggggagatggagtga
aacactccagcggttccagctggcggaagtcgaagattactgatagggct
tgggccgtaggactgctcccttgattcagctcgggtgatgtgtcttacac
tgcttcgcttggccccgagtgacaggaaaccaaggtagcactatcaatct
tacttgccccaaatagatagtgaaacacagacaagaaattggagagatta
gatagattaaaatatggaaaaacacaaacacatttaagattgtgccctca
atcccaaatccctcaacacagtacaggaaatattccagtgtttatctgaa
tgagcacaggcatgctactgagtcgtctgacaaaagaaaagccttccttg
cagttcctaagaatgatccggcaggaatttgcagaggatggagattcctt
tcacaaagttaaccatcttcggtaatataaaacgctagcacatctcctgc
catttccctgtatggcctgcctactgctcattgtatattgttagctcaca
tttgcagccgcagatatatgtttaaaagggaaagaaacgacaatcatcag
gaagtaggaacaattgtgtgtctgtaccacatctggagctctggtcttaa
aagaatttgttcctttctctttagtttgcaaaactgtacacaaatatagt
tcatagagaaatctactgaattgaaatttcttctgaaagcaaaaacattg
gaatttaatctgtatctttagacacaggaggaaagctggaaaaccatgct
tcacgtttatgaaactgatgacatagattaaccatcctaaaatgttccag
gacaaaaggaacataataagcattcaactaggttcttttcttttcctttt
ctttctatgttctttcttttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94285480_94286652
seq2: B6Ng01-077P18.b_47_1209 (reverse)

seq1  CATGG-CCCCAGCAACGATGGCAATCATGATGGTGAGATAGTCC-TCGTT  48
      ||||| ||||||||||||| || ||||  || |||||||||||| |||||
seq2  CATGGTCCCCAGCAACGATTGCCATCAGTAT-GTGAGATAGTCCTTCGTT  49

seq1  CTGATAAGGTTGACCACTATCTCCTATGTTCCGGTCCAGTGGGGTCTCCA  98
      ||||||  | ||||||  |||||||||||||| |||||||||||  | ||
seq2  CTGATA--GGTGACCA-AATCTCCTATGTTCC-GTCCAGTGGGG--TTCA  93

seq1  TAGTCCTACGGATCAAGTCATATAT-ATATGAGGTGTTTCCAGCAGTGTC  147
      |||||||||||||| |||||||||| ||||||||||||| ||||||||||
seq2  TAGTCCTACGGATC-AGTCATATATAATATGAGGTGTTT-CAGCAGTGTC  141

seq1  GTTCACATAAAGAAATACCAGCACGAGAGTGTGCAAAGCCTTAGGGTACC  197
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  G-TCACATAAAGAAATACCAGCACGAGAGTGTGC-AAGCCTTAGGGTACC  189

seq1  CCAGGTCACTTATGTTGACCACAAGACGGTGCAGGCCCACATCAGTAGGT  247
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CCAGGTCACTTATG-TGA-CACAAGACGGTGCAGGCCCACATCAGTAGGT  237

seq1  GCTGGCTTCTCTTCTAAGGTGATATTGCCTGTTACTGGATCAATCCGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCTCTTCTAAGGTGATATTGCCTGTTACTGGATCAATCCGAAA  287

seq1  TAATCCCTTGTTGTTCCCGCTCACTATGGTATACTTGAGTTCTGCATTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTTGTTGTTCCCGCTCACTATGGTATACTTGAGTTCTGCATTCA  337

seq1  TTCCGGTGTCAATATCCACCGCAAACACTTCAGCAACCACAGAACCAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGTGTCAATATCCACCGCAAACACTTCAGCAACCACAGAACCAGGA  387

seq1  ATGGCTGAGAGGGGCACCAACTTAAAGGAGGTGTTGGATGGTGGAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGAGGGGCACCAACTTAAAGGAGGTGTTGGATGGTGGAGAAAT  437

seq1  GACAACTGGACTATTGTCATTGACATCCATGACATTGATAGTTACTTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGGACTATTGTCATTGACATCCATGACATTGATAGTTACTTTTG  487

seq1  CAGTAGAGGACCGTGGTGGCTGTCCCCCGTCGGTGGCTTTGACGTCAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGGACCGTGGTGGCTGTCCCCCGTCGGTGGCTTTGACGTCAAAC  537

seq1  GTGTAGGAACTCTGCTGCTCTCTATCAAAGGAGACATTGGACTTTATGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAACTCTGCTGCTCTCTATCAAAGGAGACATTGGACTTTATGAC  587

seq1  TCCTGAATAGGGATCCAACACAAAATTTTCATTGTCATTTAGAATGGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATAGGGATCCAACACAAAATTTTCATTGTCATTTAGAATGGAAA  637

seq1  GAGTCACAGCTTTATTCTCTCCAGCGTCTTCGTCTGTCACTGTGATTACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAGCTTTATTCTCTCCAGCGTCTTCGTCTGTCACTGTGATTACC  687

seq1  CCCACAGTACTATACTTTGGCAGATTCTCAGACACAAAAAACTGAAAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTACTATACTTTGGCAGATTCTCAGACACAAAAAACTGAAAGTG  737

seq1  ATTATGAGTAAACTTGGGGCTATTGTCATTCTCATCCAGAACAGTAACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGTAAACTTGGGGCTATTGTCATTCTCATCCAGAACAGTAACTA  787

seq1  TCACTGCTGCTTGGCTCTGGAGGGGAGGGGTCCCATTGTCCCTGGCAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTGCTTGGCTCTGGAGGGGAGGGGTCCCATTGTCCCTGGCAGTT  837

seq1  ACTGTAAAAATGAACCGCTCTTGTTCCTCCCTGTTAAAGACTCTGGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAATGAACCGCTCTTGTTCCTCCCTGTTAAAGACTCTGGAGGC  887

seq1  TGTCAAAACTCCTGTCTTTCTGTCCAGATCAAAGAAGGAGGCATTCGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAACTCCTGTCTTTCTGTCCAGATCAAAGAAGGAGGCATTCGGTC  937

seq1  CAAGCTGATAAACAATGTCTGCATTTTTTCCACTGTCTTCATCTGTAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGATAAACAATGTCTGCATTTTTTCCACTGTCTTCATCTGTAGCA  987

seq1  CTAATAGTTGTTAAGTATAACCCACGTCGGTTGTTTTCAGAAACTGACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTTGTTAAGTATAACCCACGTCGGTTGTTTTCAGAAACTGACAG  1037

seq1  CTCAATTACAGGCTGGTTGAAAATTGGTGGGTTGTCATTTTCATCCTCGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTACAGGCTGGTTGAAAATTGGTGGGTTGTCATTTTCATCCTCGA  1087

seq1  GCTTAACCCTTACCAGGGCAGTCTGATTCAAACTGGGCTTCCCCGAATCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACCCTTACCAGGGCAGTCTGATTCAAACTGGGCTTCCCCGAATCA  1137

seq1  GAGGCAACGATTTTAAAGCTGAATTC  1173
      ||||||||||||||||||||||||||
seq2  GAGGCAACGATTTTAAAGCTGAATTC  1163

seq1: chr14_94133500_94134568
seq2: B6Ng01-077P18.g_69_1142

seq1  GAATTCACTTCCTTGAATTTGTCTTTTGGGCAGAATCCAAAAGCAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCTTGAATTTGTCTTTTGGGCAGAATCCAAAAGCAAAGGG  50

seq1  ACTAAAATAAGGAAATCAATTCCTGCAAAGGAGTGTCTGCAAAGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATAAGGAAATCAATTCCTGCAAAGGAGTGTCTGCAAAGCCCAGC  100

seq1  TAAATGAACTGATGTAATCTCAGTCCTGGACTCGCAGGCAGTAACCGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACTGATGTAATCTCAGTCCTGGACTCGCAGGCAGTAACCGGGA  150

seq1  GGGAATTCTCATTACTCTGAATCTGGAGGAGGGAAGGGGAGATGGAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCTCATTACTCTGAATCTGGAGGAGGGAAGGGGAGATGGAGTGA  200

seq1  AACACTCCAGCGGTTCCAGCTGGCGGAAGTCGAAGATTACTGATAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCAGCGGTTCCAGCTGGCGGAAGTCGAAGATTACTGATAGGGCT  250

seq1  TGGGCCGTAGGACTGCTCCCTTGATTCAGCTCGGGTGATGTGTCTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGTAGGACTGCTCCCTTGATTCAGCTCGGGTGATGTGTCTTACAC  300

seq1  TGCTTCGCTTGGCCCCGAGTGACAGGAAACCAAGGTAGCACTATCAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGCTTGGCCCCGAGTGACAGGAAACCAAGGTAGCACTATCAATCT  350

seq1  TACTTGCCCCAAATAGATAGTGAAACACAGACAAGAAATTGGAGAGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCCCAAATAGATAGTGAAACACAGACAAGAAATTGGAGAGATTA  400

seq1  GATAGATTAAAATATGGAAAAACACAAACACATTTAAGATTGTGCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTAAAATATGGAAAAACACAAACACATTTAAGATTGTGCCCTCA  450

seq1  ATCCCAAATCCCTCAACACAGTACAGGAAATATTCCAGTGTTTATCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAATCCCTCAACACAGTACAGGAAATATTCCAGTGTTTATCTGAA  500

seq1  TGAGCACAGGCATGCTACTGAGTCGTCTGACAAAAGAAAAGCCTTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGGCATGCTACTGAGTCGTCTGACAAAAGAAAAGCCTTCCTTG  550

seq1  CAGTTCCTAAGAATGATCCGGCAGGAATTTGCAGAGGATGGAGATTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTAAGAATGATCCGGCAGGAATTTGCAGAGGATGGAGATTCCTT  600

seq1  TCACAAAGTTAACCATCTTCGGTAATATAAAACGCTAGCACATCTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGTTAACCATCTTCGGTAATATAAAACGCTAGCACATCTCCTGC  650

seq1  CATTTCCCTGTATGGCCTGCCTACTGCTCATTGTATATTGTTAGCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTGTATGGCCTGCCTACTGCTCATTGTATATTGTTAGCTCACA  700

seq1  TTTGCAGCCGCAGATATATG-TTAAAAGGGAAAGAAACGACAATCATCAG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGCAGCCGCAGATATATGTTTAAAAGGGAAAGAAACGACAATCATCAG  750

seq1  GAAGTAGGAACAATTGTGTGTTCTGTACCACATCTGGAGCTCTGGTCTTA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGTAGGAACAATTGTGTG-TCTGTACCACATCTGGAGCTCTGGTCTTA  799

seq1  AAAGAA-TTGTTCCTTTCTCTTTAGTTTGCAAAACTGTACACAAATATAG  848
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTGTTCCTTTCTCTTTAGTTTGCAAAACTGTACACAAATATAG  849

seq1  TTCATAGAGAAATCTACTGAATTGAAA-TTCTTCTGAAAGCAAAAACATT  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCATAGAGAAATCTACTGAATTGAAATTTCTTCTGAAAGCAAAAACATT  899

seq1  GGAATTTAATCTGTATCTTTAGACACAGGAGGAAAAGCTGGAAAACCATG  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAATTTAATCTGTATCTTTAGACACAGGAGG-AAAGCTGGAAAACCATG  948

seq1  CTTCACGTTAATGAAACTGATGACATAGATTAACCATCCTAAAATGTTCC  997
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGTTTATGAAACTGATGACATAGATTAACCATCCTAAAATGTTCC  998

seq1  AGGACAAAA-GAACATAAT-AGCATTC-ACTA-GTTTTTTCTTTTTCTTT  1043
      ||||||||| ||||||||| ||||||| |||| ||| |||  ||||| ||
seq2  AGGACAAAAGGAACATAATAAGCATTCAACTAGGTTCTTTTCTTTTCCTT  1048

seq1  TTCTTTTTCTTTTTCTTTTTTTCTTT  1069
      |||||| | | ||  || ||||||||
seq2  TTCTTTCTATGTTCTTTCTTTTCTTT  1074