BAC Information

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BAC

Clone NameB6Ng01-078A08
Chromosome14 (Build37)4 (Build37)
Map Location 56,017,944 - 56,018,55640,336,757 - 40,337,026
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729
Downstream geneEG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A08.bB6Ng01-078A08.g
ACCDH893839DH893840
length1,011899
definitionDH893839|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A08, 5' end.DH893840|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,017,944 - 56,018,556)(40,336,757 - 40,337,026)
sequence
gaattcaccctattctgggggtgctggggtacatttgtgtaggtcacatt
gcttagaacaagagttcaagaaactacacaaaaatttacagaaatgtcta
agtgattattattattattaactaaaaaccaatcagctgggtacacctgt
gagggatttttctttaattaaatcatttgaagtgggaagatccactttta
atctgggccatgccttctggtggaagcctatatggcagccatgaaagaaa
gaagttctccctccttgcctgcttgtcctaactttgcctggcaagtccat
tccttcgctgtctttagagcctgcttcttcaggattccagcctagaggat
ttggtaccagaagtggttctagagcagccgaagtataaggaaaaattttt
ttttagtatctggaataggctttccaattcgctgacacctacagttactg
aaaccttccctagaagcccagagagtactaaaagcccaaagtgttatccg
ttttacaaacttaaggagacaaatgcatttgattttcctgattcatcaat
tgtgagaggcaacagattttggtgattttgcatagaaaacttttaacaac
ttgtgggaaaataaggaaacggatgctgctagttggttgctcctaacatc
tctggataaattgacaaaagaaaagaaggagctctgtgataaagttaata
actctagcatctcaggataaggcaaggacagccctgaactctggattaaa
cggactggtaccagatgcacataaacagcctaaaggtttctaagcgtatg
ctggaagaaaatcctctctcagcagccacagagcccaagatgcagaaact
cagacagaagccttcattttaaggttgactgaattagaaagaaattcaag
tccaagctctggagggtgtcggcggccgaggtaagggcattattggtaag
gagtaggatctggtagcttgagacagagatgtgagagagcccctataagg
ctgagaacttg
gaattccaggctcagtgagagaccctttctcaaaaaataaggtggagagc
agtagaggaagatacctatgctgacctctggacttgtgcccacgcgtgca
cacacacacgcacacacaccacacacattcaagtctgggctgtatggcac
atgactgtaatctgagttctgagtgtgggggaaacaaagataaagagata
aaggctctctggaacttgctggacagtcagtctagatgaatttgtgagtc
tcaggttcagggagagagaccttgtcttaagacataaggtgagccattag
gtaaaacatttaaccctgatctctggcctccatgtgcatacatgaaggtg
tatggacctgtatatacacatacacacatgtgaacatgtgcatacatatg
ttacatatacccactaaaacaaataggtttaagataataagagagtgggg
ctggagatctggttcttctagaggtcctgagttcaattcccagaaaccac
atggggctcataaccatctataatgagatctggtgccttcttctggtgtg
tacacataatgtagacagaatatggtgtatatttagtaaataaataaatc
tttaaaaaaaaaaagaaaagaggggctggagagatggctcagcggttaag
agcactgactgctcttccacaggtcctgagttccattcccagcaaccaca
tggtggctcacaaccatctgtaatgggatctgatgctctcttctggggtg
tctgaagacagctacagtgttcttatatacataaaataaataaatcttta
aaaaagaaaagaaaaaaatataagagagccggccttatttgggaatttca
catcatgcgccctgaccccatccacctctgagttctccaggtttgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56017944_56018556
seq2: B6Ng01-078A08.b_46_658

seq1  GAATTCACCCTATTCTGGGGGTGCTGGGGTACATTTGTGTAGGTCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTATTCTGGGGGTGCTGGGGTACATTTGTGTAGGTCACATT  50

seq1  GCTTAGAACAAGAGTTCAAGAAACTACACAAAAATTTACAGAAATGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAACAAGAGTTCAAGAAACTACACAAAAATTTACAGAAATGTCTA  100

seq1  AGTGATTATTATTATTATTAACTAAAAACCAATCAGCTGGGTACACCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTATTATTATTATTAACTAAAAACCAATCAGCTGGGTACACCTGT  150

seq1  GAGGGATTTTTCTTTAATTAAATCATTTGAAGTGGGAAGATCCACTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTTTTCTTTAATTAAATCATTTGAAGTGGGAAGATCCACTTTTA  200

seq1  ATCTGGGCCATGCCTTCTGGTGGAAGCCTATATGGCAGCCATGAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCCATGCCTTCTGGTGGAAGCCTATATGGCAGCCATGAAAGAAA  250

seq1  GAAGTTCTCCCTCCTTGCCTGCTTGTCCTAACTTTGCCTGGCAAGTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTCCCTCCTTGCCTGCTTGTCCTAACTTTGCCTGGCAAGTCCAT  300

seq1  TCCTTCGCTGTCTTTAGAGCCTGCTTCTTCAGGATTCCAGCCTAGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGCTGTCTTTAGAGCCTGCTTCTTCAGGATTCCAGCCTAGAGGAT  350

seq1  TTGGTACCAGAAGTGGTTCTAGAGCAGCCGAAGTATAAGGAAAAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCAGAAGTGGTTCTAGAGCAGCCGAAGTATAAGGAAAAATTTTT  400

seq1  TTTTAGTATCTGGAATAGGCTTTCCAATTCGCTGACACCTACAGTTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATCTGGAATAGGCTTTCCAATTCGCTGACACCTACAGTTACTG  450

seq1  AAACCTTCCCTAGAAGCCCAGAGAGTACTAAAAGCCCAAAGTGTTATCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCCCTAGAAGCCCAGAGAGTACTAAAAGCCCAAAGTGTTATCCG  500

seq1  TTTTACAAACTTAAGGAGACAAATGCATTTGATTTTCCTGATTCATCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAACTTAAGGAGACAAATGCATTTGATTTTCCTGATTCATCAAT  550

seq1  TGTGAGAGGCAACAGATTTTGGTGATTTTGCATAGAAAACTTTTAACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGGCAACAGATTTTGGTGATTTTGCATAGAAAACTTTTAACAAC  600

seq1  TTGTGGGAAAATA  613
      |||||||||||||
seq2  TTGTGGGAAAATA  613

seq1: chr4_40336757_40337026
seq2: B6Ng01-078A08.g_693_882 (reverse)

seq1  TCTTTTCTTTTTTGAAAAATATTTATTTATTTTATGTATGTGAGTACACT  50
      |||||||||||||   ||| ||||||||||||||||              
seq2  TCTTTTCTTTTTT---AAAGATTTATTTATTTTATG--------------  33

seq1  GTAGCTATACAGATGGTTGTGAGCCTTTCTGCTCACTCTGGCCCAAAGAT  100
                                                        
seq2  --------------------------------------------------  33

seq1  TTGTTTACTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAG  150
                   |||||||| ||||||||||||||||||||||| ||||
seq2  -------------TATATAAGAACACTGTAGCTGTCTTCAGACACCCCAG  70

seq1  AAGAGGGCATCAGATCTCATTACAGCTGGTTGTGAGCCACCATGTGGTTG  200
      ||||| |||||||||| |||||||| ||||||||||||||||||||||||
seq2  AAGAGAGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTG  120

seq1  CTGGGATTTGAACTCAGGCCCTTCGGAAGAGCAATCAGTGCTCTTACCCG  250
      |||||| | ||||||||| |||  ||||||||| |||||||||||| |||
seq2  CTGGGAATGGAACTCAGGACCTGTGGAAGAGCAGTCAGTGCTCTTAACCG  170

seq1  CTGGGCCATCTCACCAGCCC  270
      ||| |||||||| |||||||
seq2  CTGAGCCATCTCTCCAGCCC  190