BAC Information

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BAC

Clone NameB6Ng01-078B14
Chromosome14 (Build37)
Map Location 76,845,772 - 76,960,630
singlet/doubletdoublet
Overlap geneTsc22d1, 2810032E02Rik
Upstream geneGm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Downstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078B14.bB6Ng01-078B14.g
ACCDH893894DH893895
length1,1681,065
definitionDH893894|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B14, 5' end.DH893895|Mus musculus domesticus DNA, BAC clone: B6Ng01-078B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,845,772 - 76,846,950)(76,959,567 - 76,960,630)
sequence
gaattctaggaaaatacattagacaataaggtggacatctttcctataat
tcccttctcaattagtgtggcacttactgttgttgctgagtcctgtacca
gctcacacagtgtcacagattcactgatgacatcagaagaggtcactgac
ctagaacccctaggggctcctgctcgtgctgtggctgggtcctatggtaa
gctaagctcagctcctttatacacaaaactgtcaaacttctaaaggcaag
ggctttactgccggagctatcaccaccaccaccaccaccaccaccactca
accccagaaagggtttggtttttctctgaagtgataattttcaaagtgtg
gtttgggtctagctgcccctgggcaccagagagggtgtgggagggcgagc
aagcatcttagaaatgcagattctttggcccgttttgcatccctgccaaa
gtgactgtatcctctcctcagcatttggtggtgtctggtttgggcttttc
cagtaggagttgcagtggtcgcttattgtttgaattcacaggtccctggc
catccttgttgaaaggtccattgtatatggtgggtttttgtctctgttag
cttctttgacattaggtatcctaagggttttttgcctgcttggaaatcag
ttcattgattttggacaatttatgttgtgttttgaataccagtcctttgt
cagatatatgtttggcaaaatttatccacaattctggcttgtctttagac
ctttgacaatgttctttttcggaggagtgtgtttattttactcattttaa
gtgaagtccatcctgacactctcctgttaatgagtcatgatttggtgctg
tttgtaaaatttattccaaacccattcacatagatttcccctccactctt
cgttgtctagccctgtcctgtcccctctaagccccctgccccaccctcaa
ggtctggcatttacagtatttctttgactttgagttaacattttgcaaag
tgtaggatacaggcttgcttccctttgattgcagaaatttgaagacttgc
tcgtggcttttttctgagaaactactcgttcttgggttctgtcctcttgg
cacgaaggttctgttctgatgctgcgtgctaccatttcctctcagcctga
gcttggaggacctgaagc
gaattcttctgtaaaggctaaaattcaaagttaaatacccataaggcttt
agaggttgtagttgaacacagcatggtgctgacacttgacaaaaattcct
gctggcagcacggacaaatccaaggaactcaactcttatcaacgtctccc
caaagtgcagaacagctccacacttggctccttctgagcccagttgttac
tgtggagtcgatgctgggatccagctcctgacagagcacctaggttatgg
gagccgctgcagcttctggcttaagggaggctggaggcggagcacagaaa
gaagagcatccatgaaaagaggggacaactttccacggccagtcatgagg
ctccttgggcaataagcagaaatgagatcagttatggcgctggcctgact
caacaggacaaaggcggggtgggggaggggtaaagcaagggaagggacag
tcacaataggacgttttctcattccagaaccaggaactccactgacagaa
attatacaaatttcactagcaagaacctaattccactgtagtgatagagc
aaagccctgcaatttcatactcagcaggactttctgacaaatgagaaagg
gggactgcttcaacactggcaagcaaagtttggagtggacaccagccaag
tgacccctaattcaactcagctcggatatggatgccataaaccaggaggt
atcgttcaaccccacaggttaaggcctcagtctctaagcctgccctgctt
cagatgccagatcccagtcagtataatctgtgcatctaaagcaacagggg
acagactggggctcccatggttcaatgcgatctgattaatatgatggttc
gtttgattatgaacctgacatgggcctagaattatctcgaagacaaacca
ctggaagtctgtgagagactttctagatttggttaactgagtggtaaata
tccacctaactgtgggcaccaccattccatgggctatgattccagacaca
aatagaggagaaatccccaaagacagtgcattgttcattgtttcttttcc
agaatgtttgtgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_76845772_76846950
seq2: B6Ng01-078B14.b_47_1214

seq1  GAATTCTAGGAAAATACATTAGACAATAAGGTGGACATCTTTCCTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAATACATTAGACAATAAGGTGGACATCTTTCCTATAAT  50

seq1  TCCCTTCTCAATTAGTGTGGCACTTACTGTTGTTGCTGAGTCCTGTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCAATTAGTGTGGCACTTACTGTTGTTGCTGAGTCCTGTACCA  100

seq1  GCTCACACAGTGTCACAGATTCACTGATGACATCAGAAGAGGTCACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACAGTGTCACAGATTCACTGATGACATCAGAAGAGGTCACTGAC  150

seq1  CTAGAACCCCTAGGGGCTCCTGCTCGTGCTGTGGCTGGGTCCTATGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCCCTAGGGGCTCCTGCTCGTGCTGTGGCTGGGTCCTATGGTAA  200

seq1  GCTAAGCTCAGCTCCTTTATACACAAAACTGTCAAACTTCTAAAGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTCAGCTCCTTTATACACAAAACTGTCAAACTTCTAAAGGCAAG  250

seq1  GGCTTTACTGCCGGAGCTATCACCACCACCACCACCACCACCACCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACTGCCGGAGCTATCACCACCACCACCACCACCACCACCACTCA  300

seq1  ACCCCAGAAAGGGTTTGGTTTTTCTCTGAAGTGATAATTTTCAAAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAAAGGGTTTGGTTTTTCTCTGAAGTGATAATTTTCAAAGTGTG  350

seq1  GTTTGGGTCTAGCTGCCCCTGGGCACCAGAGAGGGTGTGGGAGGGCGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCTAGCTGCCCCTGGGCACCAGAGAGGGTGTGGGAGGGCGAGC  400

seq1  AAGCATCTTAGAAATGCAGATTCTTTGGCCCGTTTTGCATCCCTGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTAGAAATGCAGATTCTTTGGCCCGTTTTGCATCCCTGCCAAA  450

seq1  GTGACTGTATCCTCTCCTCAGCATTTGGTGGTGTCTGGTTTGGGCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTATCCTCTCCTCAGCATTTGGTGGTGTCTGGTTTGGGCTTTTC  500

seq1  CAGTAGGAGTTGCAGTGGTCGCTTATTGTTTGAATTCACAGGTCCCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGAGTTGCAGTGGTCGCTTATTGTTTGAATTCACAGGTCCCTGGC  550

seq1  CATCCTTGTTGAAAGGTCCATTGTATATGGTGGGTTTTTGTCTCTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGTTGAAAGGTCCATTGTATATGGTGGGTTTTTGTCTCTGTTAG  600

seq1  CTTCTTTGACATTAGGTATCCTAAGGGTTTTTTGCCTGCTTGGAAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGACATTAGGTATCCTAAGGGTTTTTTGCCTGCTTGGAAATCAG  650

seq1  TTCATTGATTTTGGACAATTTATGTTGTGTTTTGAATACCAGTCCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATTTTGGACAATTTATGTTGTGTTTTGAATACCAGTCCTTTGT  700

seq1  CAGATATATGTTTGGCAAAATTTATCCACAATTCTGGCTTGTCTTTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATGTTTGGCAAAATTTATCCACAATTCTGGCTTGTCTTTAGAC  750

seq1  CTTTGACAATGTTCTTTTTCGGAGGAGTGTGTTTATTTTACTCATTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAATGTTCTTTTTCGGAGGAGTGTGTTTATTTTACTCATTTTAA  800

seq1  GTGAAGTCCATCCTGACACTCTCCTGTTAATGAGTCATGATTTGGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCCATCCTGACACTCTCCTGTTAATGAGTCATGATTTGGTGCTG  850

seq1  TTTGTAAAAATTTATTCCAAACCCATTCACATAGATTTCCCCTCCACTCT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGT-AAAATTTATTCCAAACCCATTCACATAGATTTCCCCTCCACTCT  899

seq1  TCGTTGTCTAGCCCTGTCCTGTCCCCTCTTAAGCCCCCTGCCCCACCCTC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCGTTGTCTAGCCCTGTCCTGTCCCCTC-TAAGCCCCCTGCCCCACCCTC  948

seq1  AAGGTCTGGCATTTTACAAGTATTTCTTTGACTTTGAGTTAACATTTTGC  1000
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AAGGTCTGGCA-TTTAC-AGTATTTCTTTGACTTTGAGTTAACATTTTGC  996

seq1  AAAAGTTGTAGGATACAGGCTTGCTTCCCTTTGATGGCAGAAATTTGAAG  1050
      |||   ||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAA--GTGTAGGATACAGGCTTGCTTCCCTTTGATTGCAGAAATTTGAAG  1044

seq1  ACTTTGCTCGTTGC-TTTTTCAGAGATATCTACTCTGTTCTTGGTTTCTG  1099
      || |||||||| || |||||| |||| | |||||| |||||||| |||||
seq2  AC-TTGCTCGTGGCTTTTTTCTGAGA-AACTACTC-GTTCTTGGGTTCTG  1091

seq1  T-CTCTTGGCACG-ATGTCCTGTCCTGATGCTGCGATGCTACCATTTCCT  1147
      | ||||||||||| | || |||| ||||||||||| ||||||||||||||
seq2  TCCTCTTGGCACGAAGGTTCTGTTCTGATGCTGCG-TGCTACCATTTCCT  1140

seq1  CTCAGCCTGGAGCTTTGGGGAAGACCTGAAGC  1179
      |||||||| ||||||   ||| ||||||||||
seq2  CTCAGCCT-GAGCTT---GGAGGACCTGAAGC  1168

seq1: chr14_76959567_76960630
seq2: B6Ng01-078B14.g_67_1131 (reverse)

seq1  GGTCAC-AACA-TCTGGGAAAGAAACAATGAACAATGCAACTGTCTGTGG  48
      | |||| |||| ||||| |||||||||||||||||||| ||||||| |||
seq2  GTTCACAAACATTCTGGAAAAGAAACAATGAACAATGC-ACTGTCTTTGG  49

seq1  GG-TTTCTCCTCTATTTGTGTCTGGAATCATAGCCCATGGAATGGTGGTG  97
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTCCTCTATTTGTGTCTGGAATCATAGCCCATGGAATGGTGGTG  99

seq1  CCCACAGTTAGGTTGGATATTTACCACTTCAGTTAACCAAATCTAGAAAG  147
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  CCCACAGTTAGG-TGGATATTTACCAC-TCAGTTAACCAAATCTAGAAAG  147

seq1  TCTCTCACAGACTTCCAGTGGTTTGTCTTCGAGATAATTCTAGG-CCATG  196
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCTCACAGACTTCCAGTGGTTTGTCTTCGAGATAATTCTAGGCCCATG  197

seq1  TCAGGTTCATAATCAAACGAACCATCATATTAATCAGATCGCATTGAACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCATAATCAAACGAACCATCATATTAATCAGATCGCATTGAACC  247

seq1  ATGGGAGCCCCAGTCTGTCCCCTGTTGCTTTAGATGCACAGATTATACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCCCCAGTCTGTCCCCTGTTGCTTTAGATGCACAGATTATACTG  297

seq1  ACTGGGATCTGGCATCTGAAGCAGGGCAGGCTTAGAGACTGAGGCCTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATCTGGCATCTGAAGCAGGGCAGGCTTAGAGACTGAGGCCTTAA  347

seq1  CCTGTGGGGTTGAACGATACCTCCTGGTTTATGGCATCCATATCCGAGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGGTTGAACGATACCTCCTGGTTTATGGCATCCATATCCGAGCT  397

seq1  GAGTTGAATTAGGGGTCACTTGGCTGGTGTCCACTCCAAACTTTGCTTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAATTAGGGGTCACTTGGCTGGTGTCCACTCCAAACTTTGCTTGC  447

seq1  CAGTGTTGAAGCAGTCCCCCTTTCTCATTTGTCAGAAAGTCCTGCTGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGAAGCAGTCCCCCTTTCTCATTTGTCAGAAAGTCCTGCTGAGT  497

seq1  ATGAAATTGCAGGGCTTTGCTCTATCACTACAGTGGAATTAGGTTCTTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGCAGGGCTTTGCTCTATCACTACAGTGGAATTAGGTTCTTGC  547

seq1  TAGTGAAATTTGTATAATTTCTGTCAGTGGAGTTCCTGGTTCTGGAATGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATTTGTATAATTTCTGTCAGTGGAGTTCCTGGTTCTGGAATGA  597

seq1  GAAAACGTCCTATTGTGACTGTCCCTTCCCTTGCTTTACCCCTCCCCCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTCCTATTGTGACTGTCCCTTCCCTTGCTTTACCCCTCCCCCAC  647

seq1  CCCGCCTTTGTCCTGTTGAGTCAGGCCAGCGCCATAACTGATCTCATTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTTTGTCCTGTTGAGTCAGGCCAGCGCCATAACTGATCTCATTTC  697

seq1  TGCTTATTGCCCAAGGAGCCTCATGACTGGCCGTGGAAAGTTGTCCCCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTGCCCAAGGAGCCTCATGACTGGCCGTGGAAAGTTGTCCCCTC  747

seq1  TTTTCATGGATGCTCTTCTTTCTGTGCTCCGCCTCCAGCCTCCCTTAAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGATGCTCTTCTTTCTGTGCTCCGCCTCCAGCCTCCCTTAAGC  797

seq1  CAGAAGCTGCAGCGGCTCCCATAACCTAGGTGCTCTGTCAGGAGCTGGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGCAGCGGCTCCCATAACCTAGGTGCTCTGTCAGGAGCTGGAT  847

seq1  CCCAGCATCGACTCCACAGTAACAACTGGGCTCAGAAGGAGCCAAGTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCGACTCCACAGTAACAACTGGGCTCAGAAGGAGCCAAGTGTG  897

seq1  GAGCTGTTCTGCACTTTGGGGAGACGTTGATAAGAGTTGAGTTCCTTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTCTGCACTTTGGGGAGACGTTGATAAGAGTTGAGTTCCTTGGA  947

seq1  TTTGTCCGTGCTGCCAGCAGGAATTTTTGTCAAGTGTCAGCACCATGCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCGTGCTGCCAGCAGGAATTTTTGTCAAGTGTCAGCACCATGCTG  997

seq1  TGTTCAACTACAACCTCTAAAGCCTTATGGGTATTTAACTTTGAATTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTACAACCTCTAAAGCCTTATGGGTATTTAACTTTGAATTTTA  1047

seq1  GCCTTTACAGAAGAATTC  1064
      ||||||||||||||||||
seq2  GCCTTTACAGAAGAATTC  1065