BAC Information

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BAC

Clone NameB6Ng01-078I02
Chromosome14 (Build37)
Map Location 123,154,217 - 123,311,419
singlet/doubletdoublet
Overlap genePcca, BC006662
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream gene4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078I02.bB6Ng01-078I02.g
ACCDH894183DH894184
length1,1861,011
definitionDH894183|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I02, 5' end.DH894184|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,310,224 - 123,311,419)(123,154,217 - 123,155,216)
sequence
gaattcacccttctgtgtgaagtggtgagctggactgacgtctgtctgtg
gtggtcattagtggatggcagtgtgtggtacagaaccaaaaccaaaacca
aaaccctgcaaaggttaattttttttaagtacaggatcaagccaggtgtg
gtggcttatgtctgtgattccagcactcagaacgctaaagcagaccatcc
tgggatatgcaagatcttacatcaaaaaaatatcaaaaccaaaacaaata
aaagtttcttctttatctagtaagaacttttgagagctccagttctgtct
gtcaaagcttgaaaaggagtcatgggatgactctttattggccttggcca
gggtcttgttaggggagaggaccctctgccctacagactagtgctgtcat
gtttgaagagggacatggtccatgggaaggtagcaataggaagacgacat
caaatgatcttagcagccttctctagaacattccccatctgaagccagta
aatactggaaattttatttggagactctgagctaacaataaccacccagc
atcttgactaacactcatccttcagtcaaaggcttccctgtattgtccca
cccctatagccatgggtatctatctcccctctttgtcctagtggtatgct
tgctgggcatctgtttcacctgtttcaatgccacattatttggtaatttt
tatgtgctattgactctttgctggacttcagactccagctagataagaac
taccctatgttgttcattcctgttgaccctagtgccttctacatagccac
agagtaggaaaaagtaacattttgagataggcttagtgagagttgaagag
gaaccaaccagacattgtgcatttgttcaaataattacatctgctttata
agaatagaaaatggtttgtccacatttctagggtatacttgacagagaat
acccagccactgccagtatgacatgtgtcctgaacatcagcttcctaggc
aagaagctagtagatgtgctgggtgtgccactctctggttggctgtgaca
tactgttggaatatatgggcctccagaagctgagtgtctgccatccttta
ctaggaattcctggtcacttttcccgagccaactggcaatctcaagcaat
tctgaactccaggccctagttcagtacataggttga
gaattcagcttctggcatgtattaggcgagttcttggcctctgagcccga
cagctgacttttagctgctgtatggatggcattggtttatctctctatct
acaccttatgtgggagggtgggttggaatttttttctactttgtggcctt
gtccatctactgttggtctttatgtaaaaatgtgattgccccatctgacc
acatgtgcctgccacgacgagtgatgaggttaggagaagcctcaggggca
aaatattaagagtacttaaatcttttgggacaatgttctaaattctcacc
acaagtttctcttactacttcatagcctgagtaaaggctgttaagtagaa
tatttttgttaaagatgattttgaagttcttatctccttctgctggcttt
catcaactaccagagtctttacatcaaaatcctggtttggtggttcagaa
aaaagttaaatatgctatcatgtcagttcttgaggttttagccacacact
atcaagtgtgtacagcactttaaatgctggcttcccatcttcctccagag
gccttccagaagcgttgttaagtgggcccgggggctagcacgggattccc
agtggtgatgagtgggaatgtctttgccctcgctgattcagtgatgaggt
agtttttgaatcttggcatgactctttcagctcttggaattccataaaaa
caacatcatcgtcatggagcctcaatgttgcagcagctgcactgagtgtt
tttgatgtcttcgcagaaggcggacaagggcttctctttgaaatgtgtga
aggcgacttgagatgccgctgcgcacatggaagttaattagtccttccct
ggggacgggatgtccgcttgttgcaacttgaatcttcattccactcaccc
ataaccagaaacactcggcttccaacgggtttcttcaaagaaaggagggg
tttcgggttctatgtttaaggctttttagatgtttggttccctttaactg
aagaggacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123310224_123311419
seq2: B6Ng01-078I02.b_43_1228 (reverse)

seq1  TCAACCTATGTACTGACACTAGGGCCACTGGAGTTCAGAATTTGCTTGAG  50
      |||||||||||||||| ||||||||  ||||||||||||| |||||||||
seq2  TCAACCTATGTACTGA-ACTAGGGC--CTGGAGTTCAGAA-TTGCTTGAG  46

seq1  ACATTTGCCAGTTAGCATACGGGGAAAGTGACCAGAGATT-CTAGTAAGG  99
      |   ||||||||| ||   |||| |||||||||||  ||| ||||||| |
seq2  A---TTGCCAGTTGGC--TCGGGAAAAGTGACCAGGAATTCCTAGTAAAG  91

seq1  GATGGCAGACAACTCAGCTTCTGGAAGCCAATATA-TCCAACAGTATGTC  148
      |||||||||| |||||||||||||| ||| ||||| ||||||||||||||
seq2  GATGGCAGAC-ACTCAGCTTCTGGAGGCCCATATATTCCAACAGTATGTC  140

seq1  ACAGCCAACCAGAGAGTGGCACACCCAGCACATCTACTAGCTTCTTGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAGCCAACCAGAGAGTGGCACACCCAGCACATCTACTAGCTTCTTGCC-  189

seq1  TAGGAAGCTGATGTTCAGGACACATTGTCATACTGGCAGTGGCTGGGTAT  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGGAAGCTGATGTTCAGGACACA-TGTCATACTGGCAGTGGCTGGGTAT  238

seq1  TCTCTGTCAAGTATACCCTAGAAATGTGGACAAACCATTTTCTATTCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAAGTATACCCTAGAAATGTGGACAAACCATTTTCTATTCTTA  288

seq1  TAAAGCAGATGTAATTATTTGAACAAATGCACAATGTCTGGTTGGTTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGATGTAATTATTTGAACAAATGCACAATGTCTGGTTGGTTCCT  338

seq1  CTTCAACTCTCACTAAGCCTATCTCAAAATGTTACTTTTTCCTACTCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTCTCACTAAGCCTATCTCAAAATGTTACTTTTTCCTACTCTGT  388

seq1  GGCTATGTAGAAGGCACTAGGGTCAACAGGAATGAACAACATAGGGTAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTAGAAGGCACTAGGGTCAACAGGAATGAACAACATAGGGTAGT  438

seq1  TCTTATCTAGCTGGAGTCTGAAGTCCAGCAAAGAGTCAATAGCACATAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTAGCTGGAGTCTGAAGTCCAGCAAAGAGTCAATAGCACATAAA  488

seq1  AATTACCAAATAATGTGGCATTGAAACAGGTGAAACAGATGCCCAGCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAAATAATGTGGCATTGAAACAGGTGAAACAGATGCCCAGCAAG  538

seq1  CATACCACTAGGACAAAGAGGGGAGATAGATACCCATGGCTATAGGGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACTAGGACAAAGAGGGGAGATAGATACCCATGGCTATAGGGGTG  588

seq1  GGACAATACAGGGAAGCCTTTGACTGAAGGATGAGTGTTAGTCAAGATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATACAGGGAAGCCTTTGACTGAAGGATGAGTGTTAGTCAAGATGC  638

seq1  TGGGTGGTTATTGTTAGCTCAGAGTCTCCAAATAAAATTTCCAGTATTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTATTGTTAGCTCAGAGTCTCCAAATAAAATTTCCAGTATTTA  688

seq1  CTGGCTTCAGATGGGGAATGTTCTAGAGAAGGCTGCTAAGATCATTTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCAGATGGGGAATGTTCTAGAGAAGGCTGCTAAGATCATTTGAT  738

seq1  GTCGTCTTCCTATTGCTACCTTCCCATGGACCATGTCCCTCTTCAAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCTTCCTATTGCTACCTTCCCATGGACCATGTCCCTCTTCAAACAT  788

seq1  GACAGCACTAGTCTGTAGGGCAGAGGGTCCTCTCCCCTAACAAGACCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACTAGTCTGTAGGGCAGAGGGTCCTCTCCCCTAACAAGACCCTG  838

seq1  GCCAAGGCCAATAAAGAGTCATCCCATGACTCCTTTTCAAGCTTTGACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCCAATAAAGAGTCATCCCATGACTCCTTTTCAAGCTTTGACAG  888

seq1  ACAGAACTGGAGCTCTCAAAAGTTCTTACTAGATAAAGAAGAAACTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTGGAGCTCTCAAAAGTTCTTACTAGATAAAGAAGAAACTTTTA  938

seq1  TTTGTTTTGGTTTTGATATTTTTTTGATGTAAGATCTTGCATATCCCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGTTTTGATATTTTTTTGATGTAAGATCTTGCATATCCCAGG  988

seq1  ATGGTCTGCTTTAGCGTTCTGAGTGCTGGAATCACAGACATAAGCCACCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGCTTTAGCGTTCTGAGTGCTGGAATCACAGACATAAGCCACCA  1038

seq1  CACCTGGCTTGATCCTGTACTTAAAAAAAATTAACCTTTGCAGGGTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTTGATCCTGTACTTAAAAAAAATTAACCTTTGCAGGGTTTTG  1088

seq1  GTTTTGGTTTTGGTTCTGTACCACACACTGCCATCCACTAATGACCACCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTGGTTCTGTACCACACACTGCCATCCACTAATGACCACCA  1138

seq1  CAGACAGACGTCAGTCCAGCTCACCACTTCACACAGAAGGGTGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACGTCAGTCCAGCTCACCACTTCACACAGAAGGGTGAATTC  1186

seq1: chr14_123154217_123155216
seq2: B6Ng01-078I02.g_65_1075

seq1  GAATTCAGCTTCTGGCATGTATTAGGCGAGTTCTTGGCCTCTGAGCCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTGGCATGTATTAGGCGAGTTCTTGGCCTCTGAGCCCGA  50

seq1  CAGCTGACTTTTAGCTGCTGTATGGATGGCATTGGTTTATCTCTCTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACTTTTAGCTGCTGTATGGATGGCATTGGTTTATCTCTCTATCT  100

seq1  ACACCTTATGTGGGAGGGTGGGTTGGAATTTTTTTCTACTTTGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTATGTGGGAGGGTGGGTTGGAATTTTTTTCTACTTTGTGGCCTT  150

seq1  GTCCATCTACTGTTGGTCTTTATGTAAAAATGTGATTGCCCCATCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTACTGTTGGTCTTTATGTAAAAATGTGATTGCCCCATCTGACC  200

seq1  ACATGTGCCTGCCACGACGAGTGATGAGGTTAGGAGAAGCCTCAGGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCCTGCCACGACGAGTGATGAGGTTAGGAGAAGCCTCAGGGGCA  250

seq1  AAATATTAAGAGTACTTAAATCTTTTGGGACAATGTTCTAAATTCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAGAGTACTTAAATCTTTTGGGACAATGTTCTAAATTCTCACC  300

seq1  ACAAGTTTCTCTTACTACTTCATAGCCTGAGTAAAGGCTGTTAAGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCTCTTACTACTTCATAGCCTGAGTAAAGGCTGTTAAGTAGAA  350

seq1  TATTTTTGTTAAAGATGATTTTGAAGTTCTTATCTCCTTCTGCTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTTAAAGATGATTTTGAAGTTCTTATCTCCTTCTGCTGGCTTT  400

seq1  CATCAACTACCAGAGTCTTTACATCAAAATCCTGGTTTGGTGGTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTACCAGAGTCTTTACATCAAAATCCTGGTTTGGTGGTTCAGAA  450

seq1  AAAAGTTAAATATGCTATCATGTCAGTTCTTGAGGTTTTAGCCACACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAATATGCTATCATGTCAGTTCTTGAGGTTTTAGCCACACACT  500

seq1  ATCAAGTGTGTACAGCACTTTAAATGCTGGCTTCCCATCTTCCTCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGTGTACAGCACTTTAAATGCTGGCTTCCCATCTTCCTCCAGAG  550

seq1  GCCTTCCAGAAGCGTTGTTAAGTGGGCCCGGGGGCTAGCACGGGATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAGAAGCGTTGTTAAGTGGGCCCGGGGGCTAGCACGGGATTCCC  600

seq1  AGTGGTGATGAGTGGGAATGTC-TTGCCCTCGCTGATTCAGTGATGAGGT  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTGGTGATGAGTGGGAATGTCTTTGCCCTCGCTGATTCAGTGATGAGGT  650

seq1  AG-TTTTGAATCTTGGCATGACTCTTTCAGCTCTTGGAATTCCATAAAAA  698
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAATCTTGGCATGACTCTTTCAGCTCTTGGAATTCCATAAAAA  700

seq1  CAACATCATCGTCATGGAGCCTCAATG-TGCAGCAGCTGCACTGAGTG-T  746
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  CAACATCATCGTCATGGAGCCTCAATGTTGCAGCAGCTGCACTGAGTGTT  750

seq1  TTTGATGTCTTCGCAGAAGGCGGACAAGGGCTTCTCTTTGAAATGTGTG-  795
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGATGTCTTCGCAGAAGGCGGACAAGGGCTTCTCTTTGAAATGTGTGA  800

seq1  AGGCGACTTGAGATGCCGCTGCGCACATGG-AGTTAATTAGTCCTTCC--  842
      |||||||||||||||||||||||||||||| |||||||||||||||||  
seq2  AGGCGACTTGAGATGCCGCTGCGCACATGGAAGTTAATTAGTCCTTCCCT  850

seq1  TGGGACTGGATGTCCGCTTGTTGCAGC-TGAATTCTCATTCCACTCACCC  891
       ||||| |||||||||||||||||| | |||||  |||||||||||||||
seq2  GGGGACGGGATGTCCGCTTGTTGCAACTTGAATCTTCATTCCACTCACCC  900

seq1  ATAACTAGAAACACCTCGCTTCAAACGGGTTTCTTCAAAGAAA-GAGGGG  940
      ||||| ||||||||   ||||| |||||||||||||||||||| ||||||
seq2  ATAACCAGAAACACTCGGCTTCCAACGGGTTTCTTCAAAGAAAGGAGGGG  950

seq1  TTTCGGGTTCTATGTTTTACAGCTTTTT-GATGTTGGTTTCCCTTTAACT  989
      |||||||||||||| ||||  ||||||| |||||| | ||||||||||||
seq2  TTTCGGGTTCTATG-TTTAAGGCTTTTTAGATGTTTGGTTCCCTTTAACT  999

seq1  G-AGAGGACCTC  1000
      | ||||||||||
seq2  GAAGAGGACCTC  1011