BAC Information

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BAC

Clone NameB6Ng01-078O21
Chromosome11 (Build37)14 (Build37)
Map Location 31,010,356 - 31,010,78953,393,934 - 53,394,983
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O21.bB6Ng01-078O21.g
ACCDH894493DH894494
length1061,072
definitionDH894493|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O21, 5' end.DH894494|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,010,356 - 31,010,789)(53,393,934 - 53,394,983)
sequence
tctgcttggtcctgtgaaggtttgatgctccagcgtagtaggatgctgga
gtggtggtacaggagaaggtgggtaggtggggtagcaccctcatagaggc
aaaggg
gaattcaccggactgtggtggacatactccttgatgtcagggtagtgccc
taggagggcataggggcagtaggagatgctcatggagacaacacccatgg
tgctgatggtgaccatggccacatagacgttgggaaacatggccatcaca
ccggtgcccacggagaagcccagtgtccccaacatgtagatgatcctgtt
gctcaggtcatagttgtccaggtacttctgtagcaaggctgagcatataa
caccagtagcagagtagatgaccaggccccagcagcccatcttcacgcca
gcattgtaggcatgccacttggtggagttggagggggcctgcgggttccc
tttgaaaataacctggcccgtgaagtcagtatagaagacagactctgtga
tgacagagaaccaagtgagaaggtggcagaggcagagccatgctcttgtt
gcctcggttggtgtttttacataaagtactttaaagtgcatgagaatcat
gctgcaaaatgagcattctaaagcaaatatatatacatatatatttcaag
atgaaactaagcagtttttaaataaattacttgaattttctgtgtcttca
aaaaaattttgagtcataactttataattgtctgtattttcataaatcta
tattagtgtataatatacatttaagttacatatgtgtataaaatctatga
aatgttgttgatgttaaatgtctcagagtaaacagaaatactcaacttgg
gaaaaccctatgaaaatgagtggaatatttgatacttgaattgtgtgctt
gggtctcttatgctactaacttgcataatgtgttccaaatagttcaagtg
tgataatacataagaaattaatttttaaattttttgtttaaaaatttttt
tgacctaaaatgtagtcttcatttgggagaaagttatatggggatgccaa
agatatttatgtactttgtggtccattccagtaaaatattctacagaata
tccttaaggcctattttattcttatgttgaaggtttatcctttaagattt
ccatggactattctttttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_31010356_31010789
seq2: B6Ng01-078O21.b_59_156 (reverse)

seq1  CCCTTTGCCTCTATGAGGGTTGGGAAATGACATCCTTCATGATAGTCACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATAATATAACATATCTAACATGAGATCTGTATGACAAGAACTTCAATTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGAAGAAAGAAGGCGAGGAAGACCTCAGAAGATGGAAAGATCTCCCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCATAGATCGAAAGGGTTAACAGTAAAAATGGCCATCTTACCAAAAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATCTACAGATTCAATGCAATCCTCATCAAAATTTATTTTTATTGCTCAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATTCATTTACATTTCAAATGATATCCTCCTTCCTAGTTACCCTTCCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAACACCTCCATCCCATACCCTCTCATCCCCCCTCTTCCCCTTCCCTTTT  350
                                                  || |||
seq2  --------------------------------------------CCCTTT  6

seq1  GTCTCTATGAGGGTGTTGCTCCACCCA--------CTCCTGCCTCACCAC  392
      | ||||||||||||| | | ||||| |        ||||||   ||||||
seq2  GCCTCTATGAGGGTGCTACCCCACCTACCCACCTTCTCCTGTACCACCAC  56

seq1  TCTAGAATTCCCCTATGCTGGGGCATCAAACCTTCATAGGAC  434
      || || || |  ||| ||||| |||||||||||||| |||||
seq2  TCCAGCATCCTACTACGCTGGAGCATCAAACCTTCACAGGAC  98

seq1: chr14_53393934_53394983
seq2: B6Ng01-078O21.g_69_1140 (reverse)

seq1  ACACAAAAAG-ATAGT-CATGG-AATCTTAAA-GATAAA-CTTC-ACAT-  43
      |||||||||| ||||| ||||| ||||||||| |||||| |||| |||| 
seq2  ACACAAAAAGAATAGTCCATGGAAATCTTAAAGGATAAACCTTCAACATA  50

seq1  AGAAT-AAATAG--CCTAAGGATA-TCTGTAGAATATTTTACTGG-ATGG  88
      ||||| ||||||  | |||||||| |||||||||||||||||||| ||||
seq2  AGAATAAAATAGGCCTTAAGGATATTCTGTAGAATATTTTACTGGAATGG  100

seq1  -CCACAAAGTACAT-AATATCTTTGGCAT-CCCATATAACTTTCT-CCAA  134
       ||||||||||||| |||||||||||||| ||||||||||||||| ||||
seq2  ACCACAAAGTACATAAATATCTTTGGCATCCCCATATAACTTTCTCCCAA  150

seq1  ATG-AGACTACA-TTTAGGTCAAAAAAATTTTT-AACAAAAAATTTAAAA  181
      ||| |||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATGAAGACTACATTTTAGGTCAAAAAAATTTTTAAACAAAAAATTTAAAA  200

seq1  --TAATTTCTTATGTATTATCACACTTGAACTATTTGGAACACATTATGC  229
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCTTATGTATTATCACACTTGAACTATTTGGAACACATTATGC  250

seq1  AAGTTAGTAGCATAAGAGACCC-AGCACAACAATTCAAGTATCAAATATT  278
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  AAGTTAGTAGCATAAGAGACCCAAGCAC-ACAATTCAAGTATCAAATATT  299

seq1  CCACTCATTTTCATAGGGTTTTCCCAAGTTGAGTATTTCTGTTTACTCTG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATTTTCATAGGGTTTTCCCAAGTTGAGTATTTCTGTTTACTCTG  349

seq1  AGACATTTAACATCAACAACATTTCATAGATTTTATACACATATGTAACT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTAACATCAACAACATTTCATAGATTTTATACACATATGTAACT  399

seq1  T-AATGTATATTATACACTAATATAGATTTATGAAAATACAGACAATTAT  427
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATATTATACACTAATATAGATTTATGAAAATACAGACAATTAT  449

seq1  AAAGTTATGACTCAAAATTTTTTTGAAGACACAGAAAATTCAAGTAATTT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGACTCAAAATTTTTTTGAAGACACAGAAAATTCAAGTAATTT  499

seq1  ATTTAAAAACTGCTTAGTTTCATCTTGAAATATATATGTATATATATTTG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAACTGCTTAGTTTCATCTTGAAATATATATGTATATATATTTG  549

seq1  CTTTAGAATGCTCATTTTGCAGCATGATTCTCATGCACTTTAAAGTACTT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATGCTCATTTTGCAGCATGATTCTCATGCACTTTAAAGTACTT  599

seq1  TATGTAAAAACACCAACCGAGGCAACAAGAGCATGGCTCTGCCTCTGCCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAAACACCAACCGAGGCAACAAGAGCATGGCTCTGCCTCTGCCA  649

seq1  CCTTCTCACTTGGTTCTCTGTCATCACAGAGTCTGTCTTCTATACTGACT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCACTTGGTTCTCTGTCATCACAGAGTCTGTCTTCTATACTGACT  699

seq1  TCACGGGCCAGGTTATTTTCAAAGGGAACCCGCAGGCCCCCTCCAACTCC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGCCAGGTTATTTTCAAAGGGAACCCGCAGGCCCCCTCCAACTCC  749

seq1  ACCAAGTGGCATGCCTACAATGCTGGCGTGAAGATGGGCTGCTGGGGCCT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGGCATGCCTACAATGCTGGCGTGAAGATGGGCTGCTGGGGCCT  799

seq1  GGTCATCTACTCTGCTACTGGTGTTATATGCTCAGCCTTGCTACAGAAGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTACTCTGCTACTGGTGTTATATGCTCAGCCTTGCTACAGAAGT  849

seq1  ACCTGGACAACTATGACCTGAGCAACAGGATCATCTACATGTTGGGGACA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACAACTATGACCTGAGCAACAGGATCATCTACATGTTGGGGACA  899

seq1  CTGGGCTTCTCCGTGGGCACCGGTGTGATGGCCATGTTTCCCAACGTCTA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTCCGTGGGCACCGGTGTGATGGCCATGTTTCCCAACGTCTA  949

seq1  TGTGGCCATGGTCACCATCAGCACCATGGGTGTTGTCTCCATGAGCATCT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATGGTCACCATCAGCACCATGGGTGTTGTCTCCATGAGCATCT  999

seq1  CCTACTGCCCCTATGCCCTCCTAGGGCACTACCCTGACATCAAGGAGTAT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCCCTATGCCCTCCTAGGGCACTACCCTGACATCAAGGAGTAT  1049

seq1  GTCCACCACAGTCCGGTGAATTC  1050
      |||||||||||||||||||||||
seq2  GTCCACCACAGTCCGGTGAATTC  1072