BAC Information

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BAC

Clone NameB6Ng01-079B08
Chromosome14 (Build37)
Map Location 117,791,062 - 117,792,198
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B08.bB6Ng01-079B08.g
ACCDH894597DH894598
length1,1331,151
definitionDH894597|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B08, 5' end.DH894598|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatttgaagattggtaggggattgatacctaaaaaatattctg
tatacgttgtgcctataattaaaattcatgtattgtatatgtaacattgt
tgggagtagattttattctgtcgaagtaataagtgcacagaagtagcctt
agttagtgttctttgtcaggctatggtgtatacatatcgcagatggaatt
ttaaatataatttttataaattaagtaaaatgatacccattttaaaaagt
tataacactaaaagtaaaaagcccccactgagcatctgtctaacacaggg
actctaacagcctctttgctgtgtcacccatacattactgaaccttttcc
tcctattatatagctgaaaccgaaacctgggaagatcacagtatctgatt
ctaatcatttatcctataatgtcaatcataattgaccaatgctcttaggc
tctcttaccagctttctccacagcaagaactgcaaatgaagcaatacggt
ctttaaattctcaaattctaaggatggatcccagaagggcacaaaaccta
catcttggttctttttattgccttccatgaacttggaagcattaattgtt
ttaaaactcttcattccatctgcacaataagaatagttttcatagtacac
acacacacacacacacacacacacatacacaaacactctctctctcacac
acacacacttgtgaaagccttctatttaagaacaaagtgtaatcatgcat
ttcctttaatctctaacaaccttgggaactggggatttccacactgatgc
tgaacacgttatttcaaacaatgtagggtcatcaaacagtaaacttttag
tttattagcgatgtcaaggtcaaatagaaataaaaatgtgttactttcaa
tgagatcattaatggcatgttgatacgcttcagtcatgaagcaaaatgac
agaaaataggctgatgataaaatagagtgtaagctaaagataaaatgcag
gttattacatgaccctagatttgtttcaatattcacaatgccacaacttt
aataaaactgatcttgaagtaatggtggaagtgacatcctaattttacta
tgtggtgcgttgtaatcacaaagcataaggtta
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttactgaaag
gacccagatgtagctgtctctagtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctccaat
ggaggagctagagaagtacccaggagctaaagggatcttcaccctatagg
tggaacaacattatgactaacagtaccctgagctcttgactctagctgca
attgtatcaaagatggcctagtcgcatcctgaagagaggccatgacccaa
cttttgtggcctgtacaaggaacccaggccaagggggggagatggtggta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117791062_117792198
seq2: B6Ng01-079B08.b_44_1176 (reverse)

seq1  TAACCTTAATGGCTTTGTGATTTAACAAACGCA-CACATAGTAAAATTAG  49
      ||||||||   |||||||||||  || |||||| ||||||||||||||||
seq2  TAACCTTA--TGCTTTGTGATT--AC-AACGCACCACATAGTAAAATTAG  45

seq1  GATGTCACTTCCACCATTACTTC-AGATCAGTTTTATTAAAGTTGTGGCA  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATGTCACTTCCACCATTACTTCAAGATCAGTTTTATTAAAGTTGTGGCA  95

seq1  TTGTGGATATTTGAAACAAATCTTAGGGTCATGTAATAACCTGCATTTTT  148
      ||||| ||| |||||||||||| |||||||||||||||||||||| ||||
seq2  TTGTGAATA-TTGAAACAAATC-TAGGGTCATGTAATAACCTGCA-TTTT  142

seq1  ATCTTTAGCTTACACTCTATTTTATCATCAGCCTATTTTCTGTCATTTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGCTTACACTCTATTTTATCATCAGCCTATTTTCTGTCATTTTG  192

seq1  CTTCATGACTGAAGCGTATCAACATGCCATTAATGATCTCATTGAAAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGACTGAAGCGTATCAACATGCCATTAATGATCTCATTGAAAGTA  242

seq1  ACACATTTTTATTTCTATTTGACCTTGACATCGCTAATAAACTAAAAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTTATTTCTATTTGACCTTGACATCGCTAATAAACTAAAAGTT  292

seq1  TACTGTTTGATGA-CCTACATTGTTTGAAATAACGTGTTCAGCATCAGTG  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGATGACCCTACATTGTTTGAAATAACGTGTTCAGCATCAGTG  342

seq1  TGGAAAT-CCCAGTTCCCAAGGTTGTTAGAGATTAAAGGAAATGCATGAT  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCCCAGTTCCCAAGGTTGTTAGAGATTAAAGGAAATGCATGAT  392

seq1  TACACTTTGTTCTTAAATAGAAGGCTTTCACAAGTGTGTGTGTGTGAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTGTTCTTAAATAGAAGGCTTTCACAAGTGTGTGTGTGTGAGAG  442

seq1  AGAGAGTGTTTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGTTTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTAT  492

seq1  GAAAACTATTCTTATTGTGCAGATGGAATGAAGAGTTTTAAAACAATTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATTCTTATTGTGCAGATGGAATGAAGAGTTTTAAAACAATTAA  542

seq1  TGCTTCCAAGTTCATGGAAGGCAATAAAAAGAACCAAGATGTAGGTTTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAAGTTCATGGAAGGCAATAAAAAGAACCAAGATGTAGGTTTTG  592

seq1  TGCCCTTCTGGGATCCATCCTTAGAATTTGAGAATTTAAAGACCGTATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCTGGGATCCATCCTTAGAATTTGAGAATTTAAAGACCGTATTG  642

seq1  CTTCATTTGCAGTTCTTGCTGTGGAGAAAGCTGGTAAGAGAGCCTAAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCAGTTCTTGCTGTGGAGAAAGCTGGTAAGAGAGCCTAAGAG  692

seq1  CATTGGTCAATTATGATTGACATTATAGGATAAATGATTAGAATCAGATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCAATTATGATTGACATTATAGGATAAATGATTAGAATCAGATA  742

seq1  CTGTGATCTTCCCAGGTTTCGGTTTCAGCTATATAATAGGAGGAAAAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTTCCCAGGTTTCGGTTTCAGCTATATAATAGGAGGAAAAGGT  792

seq1  TCAGTAATGTATGGGTGACACAGCAAAGAGGCTGTTAGAGTCCCTGTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATGTATGGGTGACACAGCAAAGAGGCTGTTAGAGTCCCTGTGTT  842

seq1  AGACAGATGCTCAGTGGGGGCTTTTTACTTTTAGTGTTATAACTTTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGCTCAGTGGGGGCTTTTTACTTTTAGTGTTATAACTTTTTAA  892

seq1  AATGGGTATCATTTTACTTAATTTATAAAAATTATATTTAAAATTCCATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTATCATTTTACTTAATTTATAAAAATTATATTTAAAATTCCATC  942

seq1  TGCGATATGTATACACCATAGCCTGACAAAGAACACTAACTAAGGCTACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATATGTATACACCATAGCCTGACAAAGAACACTAACTAAGGCTACT  992

seq1  TCTGTGCACTTATTACTTCGACAGAATAAAATCTACTCCCAACAATGTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCACTTATTACTTCGACAGAATAAAATCTACTCCCAACAATGTTA  1042

seq1  CATATACAATACATGAATTTTAATTATAGGCACAACGTATACAGAATATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAATACATGAATTTTAATTATAGGCACAACGTATACAGAATATT  1092

seq1  TTTTAGGTATCAATCCCCTACCAATCTTCAAATGTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTATCAATCCCCTACCAATCTTCAAATGTGAATTC  1133