BAC Information

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BAC

Clone NameB6Ng01-079J15
Chromosome14 (Build37)
Map Location 21,219,385 - 21,356,768
singlet/doubletdoublet
Overlap geneTtc18, Anxa7, Zmynd17, Ppp3cb
Upstream geneLOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16
Downstream geneUsp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J15.bB6Ng01-079J15.g
ACCDH894962DH894963
length1,1641,150
definitionDH894962|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J15, 5' end.DH894963|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,355,583 - 21,356,768)(21,219,385 - 21,220,545)
sequence
gaattctagatgagtctgagctacagtgtgagaccttgtctcaactatta
caacataagatgagattatatatccaaaacaatatgacatgcaaagtaaa
tcagtcttattggtccatccgtatccattcctctgtttatccatctgtca
tctattgaacagattatcactatgtagtttggctggcttcgatcttgcta
catagaccaggctggcctcaaactcatagaaatctacctaactctgcctc
ctgagcactgctctctgcactaccatgcagagagttttgttttgtttttt
ttctaaatggctgttgaacttatttccttgatcaaaaatggtcctggata
caaagagttttaaataagtaaattagtgtctgcaacagaatatgttctga
atataaggtagtagtaaaagatgagggtaaaataaaggtatgtatttggt
catgagggacctttatgccctgttaaaagattttgtgttttagggctgga
tagatactagcatagtggttaagagcacttcctgctcttacagaggacct
ggattcagtttccagcaccttcatggtgactcacagccattcataactct
aattccaagtgattggatgccctattcagacttctgaggacaccaggcac
atgtgtacacagacagaacactcatacacataaaatatatctgaagtaaa
aaagattttgaattttatatagtaaagctaatctgataacagaatattga
tgttcgaactttagaaagagtattctgtaggtttgggcaagtggctcagt
cgaatgcttgaggacctgaattctgtctccagaacccaaataaaaagtgc
tggttgtggcaatacttgctagtaattccagtactggggaggttgagaca
ggtctccagatctctcctgcctgtcagcataacctagcctacttggtgga
tcccaaaccactgagagatcccatctcaaaaacaaaaacagaaaagccaa
gtgtatgacactcagatttgtctttggtctagacacatgctcataaaaaa
tagcttgtatgggcaaaatgggaagattgtattgtgggcatgaggaggag
agcttaatcattcctcgctgactaagatctattttcatgtagggtgagga
gaggtcatgtctag
gaattcttttctgcagtacagccatggatgtggttgtacctaaggtgtaa
gtctgataagtggctctgaggtgtggcaggacccaggctggaagctcctg
aggttactgtaggtggcagtgttgagctacttccctctgtagcctctgcc
aggtcctggaccatggatcagaaccttctctttctttcccttacctcttt
ctcttccaagtagatgtgtcccaggcgtaggaagatgaagtgcatctcag
aagcatcaactacaaaactaatagttctctcatagcattctttggcctca
gcatggtttccactcaggaagtagagatggcccttcacaccccagacatt
agggttctgaggaaacaaagaacacgcagggtgatgtggcagttaagtcc
ctaatgaattttgttaaacatttaatacatttcctcccctttttccccct
aagagcacgcatacggagagagccgttctagtcacatgggtgggcatgct
ctcattcttgtattcctcagaagccattttgtctttggggtgaatgttga
gataaacactcagcgatcatccgtatgatgctattagaagcaaagaaaag
tctagaaacttgaaataacgagcaactcctgataaatgactgcctatccc
ttaccttttatagaactcatgattactaacaaaagccaaatgcacacata
aatattacccacacaggctagcagtctctgagatgtggcaccactgatct
attgactatttccagacagaggatcatgaagctgcccatgctaccttcca
gctcttgggctcgctcgcctaggcagctgagacatgctattgtgttccgc
tttcatctctgctttagcaaagaccgttcaccccttcttgttcccattca
agaggctttctctaggaaatcagtaccaggtagtccatctgtgctgctgc
tgcagtactcctctgtcttggcaaagtccttcttgagagatgtgtctggg
ccagaaccagatatactcacaactgggtcctccttgggggcacagcagct
tcatgtgccagcactctgtggcacactgcaggaaacccagggataagaac
atagattgactgcactgtgctgctgtaatagcttagggtgaaggagtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21355583_21356768
seq2: B6Ng01-079J15.b_45_1208 (reverse)

seq1  CTAGACATGACTTTCTTCCTCACCCTACATGGAAAATAGATATCTTTAGT  50
      ||||||||||| |   |||||||||||||| ||||||||||    |||||
seq2  CTAGACATGACCT--CTCCTCACCCTACAT-GAAAATAGAT---CTTAGT  44

seq1  CAGCAGAGACACTGATTAAAGACTTCCTTCCCTCCTCATGCCCAACCACT  100
      |||| |||  | |||||||       ||  ||||||||||||||  || |
seq2  CAGC-GAG-GAATGATTAA------GCTCTCCTCCTCATGCCCA--CAAT  84

seq1  ACAATCTTTCCCATTTTGCCCATTACAAGCTATTTTTTATGAGCATGTGT  150
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAATC-TTCCCATTTTGCCCA-TACAAGCTATTTTTTATGAGCATGTGT  132

seq1  CTAGACCAGAGGACAAATCTGAGTGTCATACACTTGGCTTTTTCTTGTTT  200
      |||||||| | ||||||||||||||||||||||||||| ||||||   ||
seq2  CTAGACCA-AAGACAAATCTGAGTGTCATACACTTGGC-TTTTCT--GTT  178

seq1  TTTGTTTTTGAGATGGGATCTCTCAGTGGTTTGGGATCCACCAAGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGAGATGGGATCTCTCAGTGGTTTGGGATCCACCAAGTAGGC  228

seq1  TAGGTTATGCTGACAGGCAGGAGAGATCTGGAGACCTGTCTCAACCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATGCTGACAGGCAGGAGAGATCTGGAGACCTGTCTCAACCTCCC  278

seq1  CAGTACTGGAATTACTAGCAAGTATTGCCACAACCAGCACTTTTTATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGGAATTACTAGCAAGTATTGCCACAACCAGCACTTTTTATTTG  328

seq1  GGTTCTGGAGACAGAATTCAGGTCCTCAAGCATTCGACTGAGCCACTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGAGACAGAATTCAGGTCCTCAAGCATTCGACTGAGCCACTTGC  378

seq1  CCAAACCTACAGAATACTCTTTCTAAAGTTCGAACATCAATATTCTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTACAGAATACTCTTTCTAAAGTTCGAACATCAATATTCTGTTA  428

seq1  TCAGATTAGCTTTACTATATAAAATTCAAAATCTTTTTTACTTCAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAGCTTTACTATATAAAATTCAAAATCTTTTTTACTTCAGATAT  478

seq1  ATTTTATGTGTATGAGTGTTCTGTCTGTGTACACATGTGCCTGGTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTGTATGAGTGTTCTGTCTGTGTACACATGTGCCTGGTGTCCT  528

seq1  CAGAAGTCTGAATAGGGCATCCAATCACTTGGAATTAGAGTTATGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTGAATAGGGCATCCAATCACTTGGAATTAGAGTTATGAATGG  578

seq1  CTGTGAGTCACCATGAAGGTGCTGGAAACTGAATCCAGGTCCTCTGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTCACCATGAAGGTGCTGGAAACTGAATCCAGGTCCTCTGTAAG  628

seq1  AGCAGGAAGTGCTCTTAACCACTATGCTAGTATCTATCCAGCCCTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGTGCTCTTAACCACTATGCTAGTATCTATCCAGCCCTAAAAC  678

seq1  ACAAAATCTTTTAACAGGGCATAAAGGTCCCTCATGACCAAATACATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTTTAACAGGGCATAAAGGTCCCTCATGACCAAATACATACC  728

seq1  TTTATTTTACCCTCATCTTTTACTACTACCTTATATTCAGAACATATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACCCTCATCTTTTACTACTACCTTATATTCAGAACATATTCT  778

seq1  GTTGCAGACACTAATTTACTTATTTAAAACTCTTTGTATCCAGGACCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGACACTAATTTACTTATTTAAAACTCTTTGTATCCAGGACCATT  828

seq1  TTTGATCAAGGAAATAAGTTCAACAGCCATTTAGAAAAAAAACAAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAAGGAAATAAGTTCAACAGCCATTTAGAAAAAAAACAAAACAA  878

seq1  AACTCTCTGCATGGTAGTGCAGAGAGCAGTGCTCAGGAGGCAGAGTTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTGCATGGTAGTGCAGAGAGCAGTGCTCAGGAGGCAGAGTTAGG  928

seq1  TAGATTTCTATGAGTTTGAGGCCAGCCTGGTCTATGTAGCAAGATCGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTATGAGTTTGAGGCCAGCCTGGTCTATGTAGCAAGATCGAAG  978

seq1  CCAGCCAAACTACATAGTGATAATCTGTTCAATAGATGACAGATGGATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAACTACATAGTGATAATCTGTTCAATAGATGACAGATGGATAA  1028

seq1  ACAGAGGAATGGATACGGATGGACCAATAAGACTGATTTACTTTGCATGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAATGGATACGGATGGACCAATAAGACTGATTTACTTTGCATGT  1078

seq1  CATATTGTTTTGGATATATAATCTCATCTTATGTTGTAATAGTTGAGACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTTTGGATATATAATCTCATCTTATGTTGTAATAGTTGAGACA  1128

seq1  AGGTCTCACACTGTAGCTCAGACTCATCTAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCACACTGTAGCTCAGACTCATCTAGAATTC  1164

seq1: chr14_21219385_21220545
seq2: B6Ng01-079J15.g_69_1218

seq1  GAATTCTTTTCTGCAGTACAGCCATGGATGTGGTTGTACCTAAGGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGCAGTACAGCCATGGATGTGGTTGTACCTAAGGTGTAA  50

seq1  GTCTGATAAGTGGCTCTGAGGTGTGGCAGGACCCAGGCTGGAAGCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATAAGTGGCTCTGAGGTGTGGCAGGACCCAGGCTGGAAGCTCCTG  100

seq1  AGGTTACTGTAGGTGGCAGTGTTGAGCTACTTCCCTCTGTAGCCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGTAGGTGGCAGTGTTGAGCTACTTCCCTCTGTAGCCTCTGCC  150

seq1  AGGTCCTGGACCATGGATCAGAACCTTCTCTTTCTTTCCCTTACCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGGACCATGGATCAGAACCTTCTCTTTCTTTCCCTTACCTCTTT  200

seq1  CTCTTCCAAGTAGATGTGTCCCAGGCGTAGGAAGATGAAGTGCATCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAAGTAGATGTGTCCCAGGCGTAGGAAGATGAAGTGCATCTCAG  250

seq1  AAGCATCAACTACAAAACTAATAGTTCTCTCATAGCATTCTTTGGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAACTACAAAACTAATAGTTCTCTCATAGCATTCTTTGGCCTCA  300

seq1  GCATGGTTTCCACTCAGGAAGTAGAGATGGCCCTTCACACCCCAGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTTCCACTCAGGAAGTAGAGATGGCCCTTCACACCCCAGACATT  350

seq1  AGGGTTCTGAGGAAACAAAGAACACGCAGGGTGATGTGGCAGTTAAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGAGGAAACAAAGAACACGCAGGGTGATGTGGCAGTTAAGTCC  400

seq1  CTAATGAATTTTGTTAAACATTTAATACATTTCCTCCCCTTTTTCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAATTTTGTTAAACATTTAATACATTTCCTCCCCTTTTTCCCCCT  450

seq1  AAGAGCACGCATACGGAGAGAGCCGTTCTAGTCACATGGGTGGGCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACGCATACGGAGAGAGCCGTTCTAGTCACATGGGTGGGCATGCT  500

seq1  CTCATTCTTGTATTCCTCAGAAGCCATTTTGTCTTTGGGGTGAATGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTGTATTCCTCAGAAGCCATTTTGTCTTTGGGGTGAATGTTGA  550

seq1  GATAAACACTCAGCGATCATCCGTATGATGCTATTAGAAGCAAAGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACACTCAGCGATCATCCGTATGATGCTATTAGAAGCAAAGAAAAG  600

seq1  TCTAGAAACTTGAAATAACGAGCAACTCCTGATAAATGACTGCCTATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAACTTGAAATAACGAGCAACTCCTGATAAATGACTGCCTATCCC  650

seq1  TTACCTTTTATAGAACTCATGATTACTAACAAAAGCCAAATGCACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTTATAGAACTCATGATTACTAACAAAAGCCAAATGCACACATA  700

seq1  AATATTACCCACACAGGCTAGCAGTCTCTGAGATGTGGCACCACTGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACCCACACAGGCTAGCAGTCTCTGAGATGTGGCACCACTGATCT  750

seq1  ATTGACTATTTCCAGACAGAGGATCATGAAGCTGCCCATGCTACCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATTTCCAGACAGAGGATCATGAAGCTGCCCATGCTACCTTCCA  800

seq1  GCTCTTGGGCTCGCTCGCCTAGGCAGCTGAGACATGCTATTGTGTTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGGCTCGCTCGCCTAGGCAGCTGAGACATGCTATTGTGTTCCGC  850

seq1  TTTCATCTCTGCTTTAGCAAAGACCGTTCACCCCTTCTTGTTCCCATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCTGCTTTAGCAAAGACCGTTCACCCCTTCTTGTTCCCATTCA  900

seq1  AGAGGCTTTCTCTAGGAAAATCAGTACCAGGTAGTCCATCTGTGCTGCTT  950
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  AGAGGCTTTCTCTAGG-AAATCAGTACCAGGTAGTCCATCTGTGCTGC-T  948

seq1  GCTGCAGGTACTCCTCTGTCTTGGCAAAGTCCTTCTTGAGAAGATGTGTC  1000
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTGCA-GTACTCCTCTGTCTTGGCAAAGTCCTTCTTGAG-AGATGTGTC  996

seq1  TGGGCCAGAACCAGATAATACTCACAACTGGGTCCTCCTTGGGGGCACAG  1050
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGGCCAGAACCAGAT-ATACTCACAACTGGGTCCTCCTTGGGGGCACAG  1045

seq1  CAGC-TCATGTGCCAGCACTCTGTGCACAAACTGCAAGGAAACCCAGGGA  1099
      |||| ||||||||||||||||||||  || ||||| ||||||||||||||
seq2  CAGCTTCATGTGCCAGCACTCTGTG-GCACACTGC-AGGAAACCCAGGGA  1093

seq1  TAAAGAACATAAGAATGACTGCACTGTGCTAGCTG-AATAGCTTTTAGGG  1148
      | |||||||| ||| ||||||||||||||| |||| ||||||  ||||||
seq2  T-AAGAACAT-AGATTGACTGCACTGTGCT-GCTGTAATAGC--TTAGGG  1138

seq1  TGGAGAGAGTGTG  1161
      || || |||||||
seq2  TGAAG-GAGTGTG  1150