BAC Information

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BAC

Clone NameB6Ng01-080L12
Chromosome12 (Build37)14 (Build37)
Map Location 32,631,616 - 32,631,84682,720,355 - 82,721,539
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L12.bB6Ng01-080L12.g
ACCDH895779DH895780
length8291,161
definitionDH895779|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L12, 5' end.DH895780|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(82,720,355 - 82,721,539)
sequence
gaattctatcatcgaaatccattacaaaaacaaactcaatgtaaaaaacc
atatggtcccagttgcccctcaacaaagaaatggataccaaaaatgtggt
acatttacacaatggagtactactcagctattaaaaagaatgaatttatg
aaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggt
atccaaatcacaaaagaactcacacaatatgtactcactgataagtggat
attagtccagaaacttaaaatacccaagatataagatacaatttgctaaa
cacatgaaactcaagaagaacgaagaccaaagtgtggacactttgcccct
tcttagaactgggaacaaaacacccatgaaaagagttacagagatttgga
gctgagacgaaaggatagaccatcgagagactgccatattcagggatcca
tcccatagtcagcctccaaatgctgacaccattgcacgcactagcaagat
tttgctgaaaggacccagatatagctgtctcttgtgagactatgccgggg
cctagcaaatacagaagtggatgcccacaatcagctattggatggatcac
agggcccccaatggaggagctagagaaagtaaccaaggagataaagggat
ctgcgaccctataggtggaacaacaatatgaactacccagtaccctctga
agctcctgtctctagctgcatatgtatcagaagatggcctagttggccat
cagtggaaagagaggtctattagtcatgcaaactttatatgccccagtac
aggggaatgccagggccaagaagtgggag
gaattctaatttgtctagactgtggcaaatgctattagtgaagtcatata
attttacaagtggaaagtagcctgccatgtctcatctaagtcagctcctg
ctatgtgctcagcgagtgcctgcatatgtttatccattatcaaggtttgt
cagaaatttaagatgaaagtttgtgataaaataagatgtagactttttaa
taatgctgcatgactgagtttacatacttggcaggaactggagaaaatat
gcaattataattctcagtaaaacaaatcatttcagaaagtcaaatatcca
tgtgatgaatagcaattcagaactgttgataagacataatgtcagtcaac
aaattatacactgtttgaaactaaagaagattttgtgctgtatgttcact
gcaggatactcaaccttagggggttgcagctcttctagccaaaagggact
tcagagtgagtggaggacatgtggaaacattgtatttgtgaataaaattg
aagctctttgtcttccattgtgacttccacaatgcagcagtttatagaat
ggaagtcattgtacacactctgaagaggacagctccttcttaaaatcaaa
ctcatatgtacagctaacagatgtcacaggcacagtgaacaatgcctagc
aacaaataaatattactcagtttcactgttatgtttgctatctgcagata
cattttgatcacttgtttacaagttgaaataggaaaaattactgttatat
agaagaaaatctgagcatattaaatactcagtaacaactatctagtctaa
attctctgcatttgtagagatactattttaaataataaaacttgttccat
ttggtctccaagtacttctaccctgatccaaattacacatgcaaagaaag
tgattttatttaactgtatctacctttatagtatataaagtatggtgatc
agttaaacatgtttttatttgcgtagtatatcaaggtgtttcatatattt
aaattgagttttgtctccagtatctgttaaatgatatacccagggatagt
ttgattgtatttctgtatatcaggatcatcagttatagaatactagtatc
tcattatttacattctgtgatgaataccttacgaaatactagttataaaa
agaaaatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-080L12.b_599_876 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      ||| |||  || | ||||||||||||||||                ||||
seq2  GCATGACTAATAGACCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGC-TCCGGGGGTACTGGTCAGTTC  102
      ||||||||| ||||||||||||| |||| || | |||||||||  |||||
seq2  TGATACATATGCAGCTAGAGACAGGAGCTTCAGAGGGTACTGGGTAGTTC  150

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| |||||||||||||||||||| ||||| ||||||| |||||||| ||
seq2  ATATTGTTGTTCCACCTATAGGGTCGCAGATCCCTTTATCTCCTTGGTTA  200

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
      ||||||||| |||||||||||||| ||||||||||| |||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTGA  249

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAG  231
       |||| |||||||||||||| ||||||||
seq2  TTGTGGGCATCCACTTCTGTATTTGCTAG  278

seq1: chr14_82720355_82721539
seq2: B6Ng01-080L12.g_66_1226 (reverse)

seq1  ATAAATTTTC-TTTTATACACTTAAGTTATTCTGTAAAGTATTCCATCAC  49
      |||||||||| ||||||| |||  || ||||  |||| ||||| ||||||
seq2  ATAAATTTTCTTTTTATA-ACT--AG-TATTTCGTAAGGTATT-CATCAC  45

seq1  AGAAATGTAAAAATAATGAAGATACTAGTATTCTATAACTTGGATGAATC  99
      || |||||  |||||||| |||||||||||||||||||||  |||||   
seq2  AG-AATGT--AAATAATG-AGATACTAGTATTCTATAACT--GATGA--T  87

seq1  CCTGATATACAGAAATACAATCATACTAATTCCCTGGGTAATTATTCATT  149
      ||||||||||||||||||||||| ||||  ||||||||||  || |||||
seq2  CCTGATATACAGAAATACAATCAAACTA--TCCCTGGGTA--TA-TCATT  132

seq1  TAAAACCAGAATACTGGAGACAAAACTCAATTTAAATATATGAAACACCT  199
      |||   ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAA---CAG-ATACTGGAGACAAAACTCAATTTAAATATATGAAACACCT  178

seq1  TGATATACTACGCAAAATAAAAACATGTTTAACTGATCACCATACTTTAT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATATACTACGC-AAATAAAAACATGTTTAACTGATCACCATACTTTAT  227

seq1  ATTACTATAAAGGTAGATACAGTTAAATAAAAATCACTTTCTTTGCATGT  299
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  A-TACTATAAAGGTAGATACAGTTAAAT-AAAATCACTTTCTTTGCATGT  275

seq1  GTAATTTGGATCAGGGTAGAAGTACTTGGAGACCAAATGGAACAAGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGGATCAGGGTAGAAGTACTTGGAGACCAAATGGAACAAGTTTT  325

seq1  ATTATTTAAAATAGTATCTCTACAAATGCAGAGAATTTAGACTAGATAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAATAGTATCTCTACAAATGCAGAGAATTTAGACTAGATAGT  375

seq1  TGTTACTGAGTATTTAATATGCTCAGATTTTCTTCTATATAACAGTAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGAGTATTTAATATGCTCAGATTTTCTTCTATATAACAGTAATT  425

seq1  TTTCCTATTTCAACTTGTAAACAAGTGATCAAAATGTATCTGCAGATAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTCAACTTGTAAACAAGTGATCAAAATGTATCTGCAGATAGC  475

seq1  AAACATAACAGTGAAACTGAGTAATATTTATTTGTTGCTAGGCATTGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACAGTGAAACTGAGTAATATTTATTTGTTGCTAGGCATTGTTC  525

seq1  ACTGTGCCTGTGACATCTGTTAGCTGTACATATGAGTTTGATTTTAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCTGTGACATCTGTTAGCTGTACATATGAGTTTGATTTTAAGAA  575

seq1  GGAGCTGTCCTCTTCAGAGTGTGTACAATGACTTCCATTCTATAAACTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTCCTCTTCAGAGTGTGTACAATGACTTCCATTCTATAAACTGC  625

seq1  TGCATTGTGGAAGTCACAATGGAAGACAAAGAGCTTCAATTTTATTCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGGAAGTCACAATGGAAGACAAAGAGCTTCAATTTTATTCACA  675

seq1  AATACAATGTTTCCACATGTCCTCCACTCACTCTGAAGTCCCTTTTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATGTTTCCACATGTCCTCCACTCACTCTGAAGTCCCTTTTGGCT  725

seq1  AGAAGAGCTGCAACCCCCTAAGGTTGAGTATCCTGCAGTGAACATACAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTGCAACCCCCTAAGGTTGAGTATCCTGCAGTGAACATACAGC  775

seq1  ACAAAATCTTCTTTAGTTTCAAACAGTGTATAATTTGTTGACTGACATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTCTTTAGTTTCAAACAGTGTATAATTTGTTGACTGACATTA  825

seq1  TGTCTTATCAACAGTTCTGAATTGCTATTCATCACATGGATATTTGACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATCAACAGTTCTGAATTGCTATTCATCACATGGATATTTGACTT  875

seq1  TCTGAAATGATTTGTTTTACTGAGAATTATAATTGCATATTTTCTCCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGATTTGTTTTACTGAGAATTATAATTGCATATTTTCTCCAGT  925

seq1  TCCTGCCAAGTATGTAAACTCAGTCATGCAGCATTATTAAAAAGTCTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAAGTATGTAAACTCAGTCATGCAGCATTATTAAAAAGTCTACA  975

seq1  TCTTATTTTATCACAAACTTTCATCTTAAATTTCTGACAAACCTTGATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTATCACAAACTTTCATCTTAAATTTCTGACAAACCTTGATAA  1025

seq1  TGGATAAACATATGCAGGCACTCGCTGAGCACATAGCAGGAGCTGACTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAACATATGCAGGCACTCGCTGAGCACATAGCAGGAGCTGACTTA  1075

seq1  GATGAGACATGGCAGGCTACTTTCCACTTGTAAAATTATATGACTTCACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGACATGGCAGGCTACTTTCCACTTGTAAAATTATATGACTTCACT  1125

seq1  AATAGCATTTGCCACAGTCTAGACAAATTAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTTGCCACAGTCTAGACAAATTAGAATTC  1161