BAC Information

Click to search

BAC

Clone NameB6Ng01-081E01
Chromosome14 (Build37)1 (Build37)
Map Location 79,416,296 - 79,417,183144,619,913 - 144,620,392
singlet/doubletsingletsinglet
Overlap gene1300010F03Rik
Upstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream geneLOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E01.bB6Ng01-081E01.g
ACCDH896160DH896161
length887711
definitionDH896160|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E01, 5' end.DH896161|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,416,296 - 79,417,183)(144,619,913 - 144,620,392)
sequence
gaattccatttgtagaactgcctaaaccccaataccttgaagctttgaaa
ctaataaattgcacatataacaaataatcccagattacaaactacattta
ccaggtagactagactatattaagtcttataataccacttgaaaattatc
agttccaatcaccagtataaattaatttcttatacattataaataagact
ctttgatatccattgtactgctaaagcatgttatatcactctttcaacaa
ggtgtccctgtgaagttggctagcccttattgctgtctttgtgcctcaga
ccccccattgccagcactactggtataggtcctcatctgttcctttagac
ctagtattactatctctcttctcaagtcttttatcctctagtctttggac
aagaccagaagtgttcccatatagggccagtctgagatgtgttagtagac
actgtggagatcagcagacaagtcaaagcttgtgagtgctaggtatcagt
ccaggtgatctaacagggaatagtaaaaaggcccaggaagggcccaatat
tcccaggctcggggggcaactgtgagaagaatgttgtgcatgatgccagg
tcaaaagctcaagaaacaggatggaaaccctgtaatgggctcagtagata
aggtgggggcttggttttgaacagcaaagccatgatctaagacatgtgat
gacttgtgaattgataagataaaaaacctagaggtatgtaaacttcccca
tgatcttataggacccaagggaggcaggtagttagacacagtgtcatgtc
tgtggctcagatcttatggggacagggactcataatccccctagtcccca
atgtttacactctctcattcacatgcctctggcttat
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggtgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctgtcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtagccgcctgagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaagatggcgccgcccagaagctctgcgactctcg
cccgtcccagaaacggctggcactctgtattccacacggtcacccgtgca
gcctgccctccgcgggagtcccgggagccaagaaggctcccgccggcgcc
tgtgccacaaacctctcaggctgggcagacccccgtgctctcaccaagaa
ggtggccggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79416296_79417183
seq2: B6Ng01-081E01.b_35_921

seq1  GAATTCCATTTGTAGAACTGCCTAAA-CTTAATACCTTGAAGCTTTGAAA  49
      |||||||||||||||||||||||||| |  ||||||||||||||||||||
seq2  GAATTCCATTTGTAGAACTGCCTAAACCCCAATACCTTGAAGCTTTGAAA  50

seq1  CTAATAAATTGCACATATAACAAATAATCCCAGATTACAAACTACATTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATTGCACATATAACAAATAATCCCAGATTACAAACTACATTTA  100

seq1  CCAGGTAGACTAGACTATATTAAGTCTTATAATACCACTTGAAAATTATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGACTAGACTATATTAAGTCTTATAATACCACTTGAAAATTATC  150

seq1  AGTTCCAATCACCAGTATAAATTAATTTCTTATACATTATAAATAAGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAATCACCAGTATAAATTAATTTCTTATACATTATAAATAAGACT  200

seq1  CTTTGATATCCATTGTACTGCTAAAGCATGTTATATCACTCTTTCAACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATCCATTGTACTGCTAAAGCATGTTATATCACTCTTTCAACAA  250

seq1  GGTGTCCCTGTGAAGTTGGCTAGCCCTTATTGCTGTCTTTGTGCCTCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCTGTGAAGTTGGCTAGCCCTTATTGCTGTCTTTGTGCCTCAGA  300

seq1  CCCCCCATTGCCAGCACTACTGGTATAGGTCCTCATCTGTTCCTTTAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATTGCCAGCACTACTGGTATAGGTCCTCATCTGTTCCTTTAGAC  350

seq1  CTAGTATTACTATCTCTCTTCTCAAGTCTTTTATCCTCTAGTCTTTGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTACTATCTCTCTTCTCAAGTCTTTTATCCTCTAGTCTTTGGAC  400

seq1  AAGACCAGAAGTGTTCCCATATAGGGCCAGTCTGAGATGTGTTAGTAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGAAGTGTTCCCATATAGGGCCAGTCTGAGATGTGTTAGTAGAC  450

seq1  ACTGTGGAGATCAGCAGACAAGTCAAAGCTTGTGAGTGCTAGGTATCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGATCAGCAGACAAGTCAAAGCTTGTGAGTGCTAGGTATCAGT  500

seq1  CCAGGTGATCTAACAGGGAATAGTAAAAAGGCCCAGGAAGGGCCCAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGATCTAACAGGGAATAGTAAAAAGGCCCAGGAAGGGCCCAATAT  550

seq1  TCCCAGGCTCGGGGGGCAACTGTGAGAAGAATGTTGTGCATGATGCCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTCGGGGGGCAACTGTGAGAAGAATGTTGTGCATGATGCCAGG  600

seq1  TCAAAAGCTCAAGAAACAGGATGGAAACCCTGTAATGGGCTCAGTAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTCAAGAAACAGGATGGAAACCCTGTAATGGGCTCAGTAGATA  650

seq1  AGGTGGGGGCTTGGTTTTGAACAGCAAAGCCATGATCTAAGACATGTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGCTTGGTTTTGAACAGCAAAGCCATGATCTAAGACATGTGAT  700

seq1  GACTTGTGAATTGATAAGAT-AAAAACCTAGAGGTATGTAAACTTCCCCA  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTTGTGAATTGATAAGATAAAAAACCTAGAGGTATGTAAACTTCCCCA  750

seq1  TGATCTTATAGGACCCAAGGGAGGCAGTAGGTAAGACACAGTGTCAGGTC  798
      |||||||||||||||||||||||||||   || ||||||||||||| |||
seq2  TGATCTTATAGGACCCAAGGGAGGCAGGTAGTTAGACACAGTGTCATGTC  800

seq1  TGTGGCTCAGAATCTTATGGGGACAGGGACTCATAATCCCCCTAGTCCCC  848
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TGTGGCTCAG-ATCTTATGGGGACAGGGACTCATAATCCCCCTAGT-CCC  848

seq1  CAGTGTTTTACACTCTCTCATTCACATGCCTCTGGCTTAT  888
      || || ||||||||||||||||||||||||||||||||||
seq2  CAATG-TTTACACTCTCTCATTCACATGCCTCTGGCTTAT  887

seq1: chr1_144619913_144620392
seq2: B6Ng01-081E01.g_250_782 (reverse)

seq1  AGCCGGCCACCTTCCTGGTGAGAGCACGGGGGTCTGCC------------  38
      |||||||||||||| |||||||||||||||||||||||            
seq2  AGCCGGCCACCTTCTTGGTGAGAGCACGGGGGTCTGCCCAGCCTGAGAGG  50

seq1  ----------------------------------------GGACT-CCGC  47
                                              ||||| ||||
seq2  TTTGTGGCACAGGCGCCGGCGGGAGCCTTCTTGGCTCCCGGGACTCCCGC  100

seq1  GGAGGGCAGGCTGCACGGGAGACTGTGTGGAATACAGAG-GCCAGCCGTT  96
      ||||||||||||||||||| ||| ||||||||||||||| ||||||||||
seq2  GGAGGGCAGGCTGCACGGGTGACCGTGTGGAATACAGAGTGCCAGCCGTT  150

seq1  TCTGGGACGGGCGAGAGTCGCAGAGCTTCTGGGGCGGCGCCATCTTCATC  146
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TCTGGGACGGGCGAGAGTCGCAGAGCTTCT-GGGCGGCGCCATCTTCAGC  199

seq1  TCCAGACAACCTGCCACCTTCCTGGCGAGAGCCACAGAGCTTCTGAGGTG  196
      ||||||||||| |||||||||| ||| ||||||||||||||||| ||| |
seq2  TCCAGACAACCAGCCACCTTCCCGGCAAGAGCCACAGAGCTTCTCAGGCG  249

seq1  GCGACATCTTCGACTCCAGAAAACCGGCCACCTTCCTGGCCAAAGCAACA  246
      || ||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GCTACATCTTCGACTCCAGACAACTGGCCACCTTCCTGGCCAAAGCAACA  299

seq1  CAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCACCTTCAGCCAGGAGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCACCTTCAGCCAGGAGGA  349

seq1  GGTCCAAACACCAGATAACTGTACACCTTCCCCAAAAGAGGAGAGCTTGC  346
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GGTCCAAACACCAGATAACTGTACACCTTCCCTGAAAGAGGAGAGCTTGC  399

seq1  CTGCAGAGACTGCTCTAACCACTGAAACTCAGAGGAGAGAGCTTGTCTCC  396
      || ||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  CTACAGAGACTGCTCTGACCACTGAAACTCAGAGAAGAGAGCTTGTCTCC  449

seq1  CACGCCTGCTGATTGAGGGTAACAAAATCAACAGAGGAACAATCTCTTAA  446
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGCTGATAGAGGGTAACAAAATCAACAGAGGAACAATCTCTTAA  499

seq1  CAAAGACAACTATAACAACTAACTCCAGAGATTG  480
      ||||||||||||||||||||||||||||||||||
seq2  CAAAGACAACTATAACAACTAACTCCAGAGATTG  533