BAC Information

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BAC

Clone NameB6Ng01-081H01
Chromosome14 (Build37)
Map Location 55,137,364 - 55,276,758
singlet/doubletdoublet
Overlap geneD14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1
Upstream geneEG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5
Downstream geneLOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H01.bB6Ng01-081H01.g
ACCDH896294DH896295
length830495
definitionDH896294|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H01, 5' end.DH896295|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,137,364 - 55,138,182)(55,276,258 - 55,276,758)
sequence
gaattcagggactagctggcaaggagccaggagggaaaaaaaaaaaatag
taataggggtgacatccatcattttgtccttgcagtgggaaccagcaggg
agagtcggatctggggactggatatgctgaactggtcgtctagagagtgc
tgtgtaatagagggttgtatgatccaaatgacgtgaaccagacaatattt
ggacgtttctagaagagaagtcttaactagtaagatcaggggttctggag
gacagtgtctcagcaatacaggaaggatgtgggtaggatgcgctcttagg
agccctgtgtcatgtgaaagtcaggaaaccagagaaataagaaaacatac
tatgagggtgttgaggatgcttttgtaccaccaccaccaccaccaccacc
tcctcctcttcctcctcctccaccaccaccaccacctcctcctcttcctc
ctccaccacctccttccttctgctgccccaggaccttatgcagtatacat
attacatttagtcgcaggtatccttaggctcctttggattaatactattt
ctcagatgtttttcgttttttatgattgataattttgatgagtgtttgtc
gggcatattgtaagatgcccttctattagaacttgtcttcgtgattagac
taggaaggacaataagagatgtcctgccattttctctctctctccctcct
tccctccctctgtcctttcctcttttatccttctcttcctctctccccct
ccctctgttttcctctctcactccctctctcccttcctcctcctcccttt
tcactcactctcactctctctctctctctc
ttgggtcctgtaaaattccatcaaagggagaagggaggggccagagagac
actcagaggttaggagtgctggctgcttgtgcagaggacctgggtctagt
tcccagcattcacatggtgactccagctccagggatgttagtgccatctt
ttgacctctggacgccaggcacacattgtgcatatacatataaaataatg
tatctatttttcttttctttttttttttgagataattacatcattttccc
cttcccttttccccctgtgaaacctcccacatacctttccttgttctctt
tcaaattcgtagcctctctttttcataaattgtctttatatgcattgtgt
atatgtgtgtgcgtgtatgtgtgtgtgtgtatgcacatgtataggaaagt
agaaggacaaatctatgaaaaggttatgaaagtcaaggagaaaatgggat
tgttcattttattttcagagccagagctaggtagttgtggcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55137364_55138182
seq2: B6Ng01-081H01.b_42_871

seq1  GAATTCAGGGACTAGCTGGCAAGGAGCCAGGAGGGAAAAAAAAAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACTAGCTGGCAAGGAGCCAGGAGGGAAAAAAAAAAAATAG  50

seq1  TAATAGGGGTGACATCCATCATTTTGTCCTTGCAGTGGGAACCAGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGGTGACATCCATCATTTTGTCCTTGCAGTGGGAACCAGCAGGG  100

seq1  AGAGTCGGATCTGGGGACTGGATATGCTGAACTGGTCGTCTAGAGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGGATCTGGGGACTGGATATGCTGAACTGGTCGTCTAGAGAGTGC  150

seq1  TGTGTAATAGAGGGTTGTATGATCCAAATGACGTGAACCAGACAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATAGAGGGTTGTATGATCCAAATGACGTGAACCAGACAATATTT  200

seq1  GGACGTTTCTAGAAGAGAAGTCTTAACTAGTAAGATCAGGGGTTCTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTTCTAGAAGAGAAGTCTTAACTAGTAAGATCAGGGGTTCTGGAG  250

seq1  GACAGTGTCTCAGCAATACAGGAAGGATGTGGGTAGGATGCGCTCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTCTCAGCAATACAGGAAGGATGTGGGTAGGATGCGCTCTTAGG  300

seq1  AGCCCTGTGTCATGTGAAAGTCAGGAAACCAGAGAAATAAGAAAACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGTCATGTGAAAGTCAGGAAACCAGAGAAATAAGAAAACATAC  350

seq1  TATGAGGGTGTTGAGGATGCTTTTGTACCACCACCACCACCACCACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTGTTGAGGATGCTTTTGTACCACCACCACCACCACCACCACC  400

seq1  TCCTCCTCTTCCTCCTCCTCCACCACCACCACCACCTCCTCCTCTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTCCTCCTCCTCCACCACCACCACCACCTCCTCCTCTTCCTC  450

seq1  CTCCACCACCTCCTTCCTTCTGCTGCCCCAGGACCTTATGCAGTATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCACCTCCTTCCTTCTGCTGCCCCAGGACCTTATGCAGTATACAT  500

seq1  ATTACATTTAGTCGCAGGTATCCTTAGGCTCCTTTGGATTAATACTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTAGTCGCAGGTATCCTTAGGCTCCTTTGGATTAATACTATTT  550

seq1  CTCAGATGTTTTTCGTTTTTTATGATTGATAATTTTGATGAGTGTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGTTTTTCGTTTTTTATGATTGATAATTTTGATGAGTGTTTGTC  600

seq1  GGGCATATTGTAAGATGCCCTTCTATTAGAACTTGTC-TCGTGATTAGAC  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGCATATTGTAAGATGCCCTTCTATTAGAACTTGTCTTCGTGATTAGAC  650

seq1  TAGGAAGGACAATAAGAGATGTCCTGCCATTTTCTCTCTCTCTCCCTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGACAATAAGAGATGTCCTGCCATTTTCTCTCTCTCTCCCTCCT  700

seq1  TCCCTCCCTCTGTCCTTTCCTCTTTTATCCTTCTCTTCCTCTCTCCCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCTGTCCTTTCCTCTTTTATCCTTCTCTTCCTCTCTCCCCCT  750

seq1  CCCTCTGTTTTCCTCTCTCACTCCCTCTCTCCCTTCCTCCTCCTCCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTTTTCCTCTCTCACTCCCTCTCTCCCTTCCTCCTCCTCCCTTT  800

seq1  TCTCTCTCTCTCTCTCTCTC----------  819
      || ||| ||||| |||||||          
seq2  TCACTCACTCTCACTCTCTCTCTCTCTCTC  830

seq1: chr14_55276258_55276758
seq2: B6Ng01-081H01.g_61_561 (reverse)

seq1  GTGTGCCACAACTACCTAGCTCTGGCTCTGAAAATAAAATGAACAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACAACTACCTAGCTCTGGCTCTGAAAATAAAATGAACAATCCC  50

seq1  ATTTTCTCCTTGACTTTCATAACCTTTTCATAGATTTGTCCTTCTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTGACTTTCATAACCTTTTCATAGATTTGTCCTTCTACTTT  100

seq1  CCTATACATGTGCATACACACACACACATACACGCACACACATATACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACATGTGCATACACACACACACATACACGCACACACATATACACA  150

seq1  ATGCATATAAAGACAATTTATGAAAAAGAGAGGCTACGAATTTGAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAAAGACAATTTATGAAAAAGAGAGGCTACGAATTTGAAAGAG  200

seq1  AACAAGGAAAGGTATGTGGGAGGTTTCACAGGGGGAAAAGGGAAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAAGGTATGTGGGAGGTTTCACAGGGGGAAAAGGGAAGGGGAA  250

seq1  AATGATGTAATTATCTCAAAAAAAAAAAGAAAAGAAAAATAGATACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTAATTATCTCAAAAAAAAAAAGAAAAGAAAAATAGATACATTA  300

seq1  TTTTATATGTATATGCACAATGTGTGCCTGGCGTCCAGAGGTCAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGTATATGCACAATGTGTGCCTGGCGTCCAGAGGTCAAAAGAT  350

seq1  GGCACTAACATCCCTGGAGCTGGAGTCACCATGTGAATGCTGGGAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAACATCCCTGGAGCTGGAGTCACCATGTGAATGCTGGGAACTAG  400

seq1  ACCCAGGTCCTCTGCACAAGCAGCCAGCACTCCTAACCTCTGAGTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTCCTCTGCACAAGCAGCCAGCACTCCTAACCTCTGAGTGTCTC  450

seq1  TCTGGCCCCTCCCTTCTCCCTTTGATGGAATTTTACAGGACCCAAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCTCCCTTCTCCCTTTGATGGAATTTTACAGGACCCAAGAATT  500

seq1  C  501
      |
seq2  C  501