BAC Information

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BAC

Clone NameB6Ng01-081H02
Chromosome14 (Build37)
Map Location 106,785,153 - 106,924,838
singlet/doubletdoublet
Overlap geneLOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476
Downstream geneLOC668748, LOC668752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H02.bB6Ng01-081H02.g
ACCDH896296DH896297
length1,1211,109
definitionDH896296|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H02, 5' end.DH896297|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,785,153 - 106,786,274)(106,923,721 - 106,924,838)
sequence
gaattcaactgcttctgcctctccggtgctgggattaaaggcgtgaggcc
ccattttgcacataatgaacgtttttgatttggaataatgccatgtattt
gggaaattttaaatcctttaacacttcggtaagtttcttaatttttcagt
tttccatctctagatttccatacagattgattcctgaatacctttgtgtg
accattcctcaaggaatgaggtgaaaaagaacgaactgcaacaggcgcct
gtgctggagtggagcaagggctttcgacatgtgttcatcctgtctgaaca
gcacacatggacattctagagtatagtttacacatactggggtctatcag
agcttgcttgccatgccctttgagccacccccttccccatttttggtggt
ggtgcgtgaggagactgttgaagattcaggaaatataatgtaactagatg
aaggttgctaatgtttcttgtagatgcagccttcctctgctctttgaatc
cagctgtgacaaagtgagcagttgctatcactatatctataactatatag
taatggctttctgcaagctcaaagcattggatccagcttactttgtctgg
tatcactgaagctgtgagcgagataactcttcttccttttgcatctctaa
gatattttgcacagtggccaaagcccaactaccactgtatgtgtaagtca
tttcgcctgggccacattcctcaaaaaagacttaaaggaggagaagatat
gaaatggtttatagcacctaagagtgttacagtgaacaaggcacttaggt
acatgtacatagttccattccatgtcatcagtccttcccatcattttcaa
ctgtagttggggattctgagtccctgtgtgtgggggagctgccctccacg
ttcgccgttacaagatggcgctgacatcctgtgtttctaaatggtaaaca
aaagaatctgctcatgtgccaagggtagttctccacttccatgtgctctg
cttcccagtgacgacactcggcattgggctgcagccaatcaggagtgacc
gtcttaggcggagatatattctcttaaaggacagggtttcgcattttcct
ctcttgctcctgaagaatgta
gaattcttagatctgtactagaaactgaataatgatgacaaaacattggt
atcaaaacctccttttgagtatgttcctggatataactgaacagcagctc
aggattcactgtctcaggggtagaaatagttttatatattgttaaatatt
aatttatctttcattcaagtgaaatattaactagtgtgagagttttagtt
gctaattcaaggctcagatcataatcccgactctgaggcacttaagaaaa
ataggtgagtcaaaggttatttaaggagaattaagacctatcttgtcagt
accactgaatatgattcatattgtttgggagtttatggaaaacacacttt
tctctagaattaaatacataataaaaaaactaaaacattcccccatatct
ctgcctccatctccatgtctctgtctctgtctctctgtctctctgtctct
ctctctttcacacacacacacacacacacacacacacactttctcattta
tatggttgttttgcctgcacacatgcatctgtaccacttatattactggt
gtttccagggaccaaaagagaacatcatagccccagaacctgaaagtaca
gcaaagtacagacaattgtgagtctctatgtgagttctgggaatcaagta
gaagtcctctgggagcactcagcgctgtacccagtgagctatctctccat
cttcacctgctgttttactaagaacatccatgttggagtaacaccattaa
tagtaagtatttttctaggcattgaaaacactgcccataaatacagatat
ctgtatgtttccaacactgtaaatacagataacctgccccctaacctcaa
agctctcccccaaccatcagactcaataaccctttctgcttttccacaca
gtatatcttcttacaaattttacaccaatgcatatatttcggagtgattt
ctcttctgtgtgccttataacatgctaggaggactagtccataaaattga
ctagagagtaattggatccacatgtgtgcaatttcataaagacttctcat
agaatagccttctattcttttgccagaatcaatgcactacttactcgtga
gaaaagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_106785153_106786274
seq2: B6Ng01-081H02.b_41_1161

seq1  GAATTCAACTGCTTCTGCCTCTCCGGTGCTGGGATTAAAGGCGTGAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGCTTCTGCCTCTCCGGTGCTGGGATTAAAGGCGTGAGGCC  50

seq1  CCATTTTGCACATAATGAACGTTTTTGATTTGGAATAATGCCATGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCACATAATGAACGTTTTTGATTTGGAATAATGCCATGTATTT  100

seq1  GGGAAATTTTAAATCCTTTAACACTTCGGTAAGTTTCTTAATTTTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTTTAAATCCTTTAACACTTCGGTAAGTTTCTTAATTTTTCAGT  150

seq1  TTTCCATCTCTAGATTTCCATACAGATTGATTCCTGAATACCTTTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCTAGATTTCCATACAGATTGATTCCTGAATACCTTTGTGTG  200

seq1  ACCATTCCTCAAGGAATGAGGTGAAAAAGAACGAACTGCAACAGGCGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCTCAAGGAATGAGGTGAAAAAGAACGAACTGCAACAGGCGCCT  250

seq1  GTGCTGGAGTGGAGCAAGGGCTTTCGACATGTGTTCATCCTGTCTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGTGGAGCAAGGGCTTTCGACATGTGTTCATCCTGTCTGAACA  300

seq1  GCACACATGGACATTCTAGAGTATAGTTTACACATACTGGGGTCTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGGACATTCTAGAGTATAGTTTACACATACTGGGGTCTATCAG  350

seq1  AGCTTGCTTGCCATGCCCTTTGAGCCACCCCCTTCCCCATTTTTGGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTGCCATGCCCTTTGAGCCACCCCCTTCCCCATTTTTGGTGGT  400

seq1  GGTGCGTGAGGAGACTGTTGAAGATTCAGGAAATATAATGTAACTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTGAGGAGACTGTTGAAGATTCAGGAAATATAATGTAACTAGATG  450

seq1  AAGGTTGCTAATGTTTCTTGTAGATGCAGCCTTCCTCTGCTCTTTGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCTAATGTTTCTTGTAGATGCAGCCTTCCTCTGCTCTTTGAATC  500

seq1  CAGCTGTGACAAAGTGAGCAGTTGCTATCACTATATCTATAACTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGACAAAGTGAGCAGTTGCTATCACTATATCTATAACTATATAG  550

seq1  TAATGGCTTTCTGCAAGCTCAAAGCATTGGATCCAGCTTACTTTGTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTTTCTGCAAGCTCAAAGCATTGGATCCAGCTTACTTTGTCTGG  600

seq1  TATCACTGAAGCTGTGAGCGAGATAACTCTTCTTCCTTTTGCATCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGAAGCTGTGAGCGAGATAACTCTTCTTCCTTTTGCATCTCTAA  650

seq1  GATATTTTGCACAGTGGCCAAAGCCCAACTACCACTGTATGTGTAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTGCACAGTGGCCAAAGCCCAACTACCACTGTATGTGTAAGTCA  700

seq1  TTTCGCCTGGGCCACATTCCTCAAAAAAGACTTAAAGGAGGAGAAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCCTGGGCCACATTCCTCAAAAAAGACTTAAAGGAGGAGAAGATAT  750

seq1  GAAATGGTTTATAGCACCTAAGAGTGTTACAGTGAACAAGGCACTTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTTTATAGCACCTAAGAGTGTTACAGTGAACAAGGCACTTAGGT  800

seq1  ACATGTACATAGTTCCATTCCATGTCATCAGTCCTT-CCATCATTTTCAA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATGTACATAGTTCCATTCCATGTCATCAGTCCTTCCCATCATTTTCAA  850

seq1  CTGTAGTTGGGGATTCTGAGTCCCTGTGTGT-GGGGAGCTGCCCT-CACG  897
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CTGTAGTTGGGGATTCTGAGTCCCTGTGTGTGGGGGAGCTGCCCTCCACG  900

seq1  TTCGCCGTTACAAGATGGCGCTGACATCCTGTG-TTCTAAATGGTAAAC-  945
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  TTCGCCGTTACAAGATGGCGCTGACATCCTGTGTTTCTAAATGGTAAACA  950

seq1  AAAGAATCTGCTCATGTGCCAAGGGTAGTTCTCCAC-TCCATGTGCTCTG  994
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGAATCTGCTCATGTGCCAAGGGTAGTTCTCCACTTCCATGTGCTCTG  1000

seq1  CCTTCCCAGTGACGACAACTCGGCCAATGGGCTGCAGCCAATCAGGGAGT  1044
       ||||||||||||||| |||||| || ||||||||||||||||| |||||
seq2  -CTTCCCAGTGACGAC-ACTCGG-CATTGGGCTGCAGCCAATCA-GGAGT  1046

seq1  GACACGTCCTAGGCGGAGGATA-ATTCTCCTTAAAAGGGACAGGGTTTCG  1093
      ||| |||| |||||||| |||| ||||| ||||||  |||||||||||||
seq2  GAC-CGTCTTAGGCGGA-GATATATTCT-CTTAAA--GGACAGGGTTTCG  1091

seq1  CCATTTTCTCTCTTGCTCCTGAAG-ATGTA  1122
      |  ||| ||||||||||||||||| |||||
seq2  CATTTTCCTCTCTTGCTCCTGAAGAATGTA  1121

seq1: chr14_106923721_106924838
seq2: B6Ng01-081H02.g_68_1176 (reverse)

seq1  TGTCTTTT-TCTCCAGTAAGTAGTGCATTTGATTTCTGGC-AGAGAATAG  48
      |||||||| || | ||||||||||||| |||| ||||||| | |||||||
seq2  TGTCTTTTCTCACGAGTAAGTAGTGCA-TTGA-TTCTGGCAAAAGAATAG  48

seq1  GAAGGGCTATTTCTTATGAGAAGTCTTTTATTGAAATTGCACCACATGTG  98
        | |||||||   ||||||||||||||   |||||||||| ||||||||
seq2  --AAGGCTATT--CTATGAGAAGTCTTT--ATGAAATTGCA-CACATGTG  91

seq1  GAATCCAATTA--CTCTAGTCAATTTTTATGGACTAGTCCCTCCTTAGCA  146
      | |||||||||  |||||||||| |||||||||||||| ||||| |||||
seq2  G-ATCCAATTACTCTCTAGTCAA-TTTTATGGACTAGT-CCTCC-TAGCA  137

seq1  TTGTTATAAGGCACACAGAAGAGAAATCACTCCGAAATATATGCATTGGT  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTTATAAGGCACACAGAAGAGAAATCACTCCGAAATATATGCATTGGT  186

seq1  GTTAAAATTTGTAAG-AGATATACTTGTGTGGAAAAGCAG-AAGGGTTAT  244
      | ||||||||||||| |||||||| ||||||||||||||| |||||||||
seq2  G-TAAAATTTGTAAGAAGATATAC-TGTGTGGAAAAGCAGAAAGGGTTAT  234

seq1  TGAAGTCTGATGGTTGGGGGAGAGCTTTGAGGTTAGGGGGCAGGTTATCT  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-AGTCTGATGGTTGGGGGAGAGCTTTGAGGTTAGGGGGCAGGTTATCT  283

seq1  GTATTTACAGTGTTGGAAACATACAGATATCTGTATTTAT-GGCAGTGTT  343
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTATTTACAGTGTTGGAAACATACAGATATCTGTATTTATGGGCAGTGTT  333

seq1  TTCAATGCCTAGAAAAATACTTACTATTAATGGTGTTACTCCAACATGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCCTAGAAAAATACTTACTATTAATGGTGTTACTCCAACATGGA  383

seq1  TGTTCTTAGT-AAACAGCAGGTGAAGATGGAGAGATAGCTCACTGGGTAC  442
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGTAAAACAGCAGGTGAAGATGGAGAGATAGCTCACTGGGTAC  433

seq1  AGCGCTGAGTGCTCCCAGAGGACTTCTACTTGATTCCCAGAACTCACATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGAGTGCTCCCAGAGGACTTCTACTTGATTCCCAGAACTCACATA  483

seq1  GAGACTCACAATTGTCTGTACTTTGCTGTACTTTCAGGTTCTGGGGCTAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCACAATTGTCTGTACTTTGCTGTACTTTCAGGTTCTGGGGCTAT  533

seq1  GATGTTCTCTTTTGGTCCCTGGAAACACCAGTAATATAAGTGGTACAGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTCTTTTGGTCCCTGGAAACACCAGTAATATAAGTGGTACAGAT  583

seq1  GCATGTGTGCAGGCAAAACAACCATATAAATGAGAAAGTGTGTGTGTGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGCAGGCAAAACAACCATATAAATGAGAAAGTGTGTGTGTGTG  633

seq1  TGTGTGTGTGTGTGTGTGAAAGAGAGAGAGACAGAGAGACAGAGAGACAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAAAGAGAGAGAGACAGAGAGACAGAGAGACAG  683

seq1  AGACAGAGACATGGAGATGGAGGCAGAGATATGGGGGAATGTTTTAGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACATGGAGATGGAGGCAGAGATATGGGGGAATGTTTTAGTTT  733

seq1  TTTTATTATGTATTTAATTCTAGAGAAAAGTGTGTTTTCCATAAACTCCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATGTATTTAATTCTAGAGAAAAGTGTGTTTTCCATAAACTCCC  783

seq1  AAACAATATGAATCATATTCAGTGGTACTGACAAGATAGGTCTTAATTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATGAATCATATTCAGTGGTACTGACAAGATAGGTCTTAATTCT  833

seq1  CCTTAAATAACCTTTGACTCACCTATTTTTCTTAAGTGCCTCAGAGTCGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATAACCTTTGACTCACCTATTTTTCTTAAGTGCCTCAGAGTCGG  883

seq1  GATTATGATCTGAGCCTTGAATTAGCAACTAAAACTCTCACACTAGTTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGATCTGAGCCTTGAATTAGCAACTAAAACTCTCACACTAGTTAA  933

seq1  TATTTCACTTGAATGAAAGATAAATTAATATTTAACAATATATAAAACTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACTTGAATGAAAGATAAATTAATATTTAACAATATATAAAACTA  983

seq1  TTTCTACCCCTGAGACAGTGAATCCTGAGCTGCTGTTCAGTTATATCCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCCCTGAGACAGTGAATCCTGAGCTGCTGTTCAGTTATATCCAG  1033

seq1  GAACATACTCAAAAGGAGGTTTTGATACCAATGTTTTGTCATCATTATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACTCAAAAGGAGGTTTTGATACCAATGTTTTGTCATCATTATTC  1083

seq1  AGTTTCTAGTACAGATCTAAGAATTC  1118
      ||||||||||||||||||||||||||
seq2  AGTTTCTAGTACAGATCTAAGAATTC  1109