BAC Information

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BAC

Clone NameB6Ng01-082A03
Chromosome14 (Build37)6 (Build37)
Map Location 116,143,282 - 116,144,42528,985,762 - 28,985,957
singlet/doubletsingletsinglet
Overlap geneGpc5
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082A03.bB6Ng01-082A03.g
ACCDH896694DH896695
length1,120936
definitionDH896694|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A03, 5' end.DH896695|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,143,282 - 116,144,425)(28,985,762 - 28,985,957)
sequence
gaattcatccattacaaaatttcatcaaactcggcaataattgcatacaa
gaacaaatcctataaactcttatgttggctgtttgccggaggacatgcat
aataataaattataccgaaaacagatgtatttctatttagttcttttgaa
ttacagatgtatttcccagttttacataagtcaaaaataatgtaatcatt
acagctacatttcaaggaaagagttattaaaatcttgtagagaattgtag
aaactaccatgaaggcaacgtatcagctaaatcaaatataagtaacatgt
tctgatgctgcaattcctgccaggcctttttaggatcctggttccttttc
ctacctgttcttctagctatgggatacttcaaggattccatggtcattgc
ttttgctctgccatagactttctttcccttgccactcaacatgagctttc
cttatagatggtcctattattcgtatgaccttcatcagaactactcgagc
attcttttcctgtacagatgatctgtaaccaaatctaagtgtagaagcag
gattttcttttgtggacttcatggtctcacctcttgaactttcttctctt
agtcaactcttaccattggtttcaattgttctttaagatcattgccctgc
ttctttgaatgcttgtttttgtatctagtatttttttttagacatataga
cactctcacatcaactttaaatgctaaaagatttcctatccccatctctg
ccctttatttctaaggtataagtatctctccgtggaaatataaaatgtcc
cctcctctgttcttcatttccatgaagtagctctaccaaaacctctcatt
catgacaaccaaatcctctagatcattgaacctgcttgttttctttctat
attgagatgtttccaagacctccataactttttccttagggctcatccac
tagcgctgtcatattctatgcaaatcatttccttcactgtcactttatcc
aacactttcatgtatatttatcctttggatctttcatagactattagatt
tctttactttagtagtagtactaaactaatcattagaactgactgtggta
ccatcttgtagaaatgggac
gaattctctgtttagttctataccccatttttttgattgtgatgtttggt
ttttggcggttagcttcttgagttatttagatattttggatattagccct
ctatgggatgtggggttagctaggacagtttcccaatctgtaggttgctg
atttatcctattgactatgtcctttgccctacagacactttccagtttta
ggagtcccatttatcaatttttgatcttagagcatgagccattggagttc
tgtttaggacaatttcctctgtgccaatgagttcaaggctctttcccact
ttatcttctattagtttcagtgtatctcgttttatgttgaggttcttgat
acactttaacttgagctttgtgcaaggtgacaaatatagatctattttca
ttttctaaatacagatagccagttagactagcaccatttattgaagatgc
tttcttttacccattgtatacttgtgacttctttgtcaaagattaagtgt
caataagtgcatggttttatttctgagattttgttttgttttgtttttgt
ttttctagacagggtttctctgtgtagccctggatgtcctgaaactcatt
ctgtagaccaggctggcctcaaactcagaaatatgcctgcctttgcctcc
caaatgctgggattaaaggcatgtgccaccactgcccagccttatttctg
agtttttaattctactccattgatcaatgtgtctatctctgtataaatat
catgcaggtttttttttttaaatcactttctcctttattttgctcttcta
aagatttagcactccaataaagagtcccattagctggggtccaaatgaat
tgtttagttatgtgaacctatggggtaacctttcatcttcataccacata
aactttttcagaacgtatgcaaaaaatacaattaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116143282_116144425
seq2: B6Ng01-082A03.b_50_1169

seq1  GAATTCATCCATTACAAAATTTCATCAAACTCGGCAATAATTGCATACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTACAAAATTTCATCAAACTCGGCAATAATTGCATACAA  50

seq1  GAACAAATCCTATAAACTCTTATGTTGGCTGTTTGCCGGAGGACATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATCCTATAAACTCTTATGTTGGCTGTTTGCCGGAGGACATGCAT  100

seq1  AATAATAAATTATACCGAAAACAGATGTATTTCTATTTAGTTCTTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATTATACCGAAAACAGATGTATTTCTATTTAGTTCTTTTGAA  150

seq1  TTACAGATGTATTTCCCAGTTTTACATAAGTCAAAAATAATGTAATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGTATTTCCCAGTTTTACATAAGTCAAAAATAATGTAATCATT  200

seq1  ACAGCTACATTTCAAGGAAAGAGTTATTAAAATCTTGTAGAGAATTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACATTTCAAGGAAAGAGTTATTAAAATCTTGTAGAGAATTGTAG  250

seq1  AAACTACCATGAAGGCAACGTATCAGCTAAATCAAATATAAGTAACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCATGAAGGCAACGTATCAGCTAAATCAAATATAAGTAACATGT  300

seq1  TCTGATGCTGCAATTCCTGCCAGGCCTTTTTAGGATCCTGGTTCCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCTGCAATTCCTGCCAGGCCTTTTTAGGATCCTGGTTCCTTTTC  350

seq1  CTACCTGTTCTTCTAGCTATGGGATACTTCAAGGATTCCATGGTCATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTCTTCTAGCTATGGGATACTTCAAGGATTCCATGGTCATTGC  400

seq1  TTTTGCTCTGCCATAGACTTTCTTTCCCTTGCCACTCAACATGAGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTGCCATAGACTTTCTTTCCCTTGCCACTCAACATGAGCTTTC  450

seq1  CTTATAGATGGTCCTATTATTCGTATGACCTTCATCAGAACTACTCGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGATGGTCCTATTATTCGTATGACCTTCATCAGAACTACTCGAGC  500

seq1  ATTCTTTTCCTGTACAGATGATCTGTAACCAAATCTAAGTGTAGAAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCCTGTACAGATGATCTGTAACCAAATCTAAGTGTAGAAGCAG  550

seq1  GATTTTCTTTTGTGGACTTCATGGTCTCACCTCTTGAACTTTCTTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTTTGTGGACTTCATGGTCTCACCTCTTGAACTTTCTTCTCTT  600

seq1  AGTCAACTCTTACCATTGGTTTCAATTGTTCTTTAAGATCATTGCCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTCTTACCATTGGTTTCAATTGTTCTTTAAGATCATTGCCCTGC  650

seq1  TTCTTTGAATGCTTGTTTTTGTATCTAGTATTTTTTTTTAGACATATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAATGCTTGTTTTTGTATCTAGTATTTTTTTTTAGACATATAGA  700

seq1  CACTCTCACATCAACTTTAAATGCTAAAAGATTTCCTATCCCCATCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCACATCAACTTTAAATGCTAAAAGATTTCCTATCCCCATCTCTG  750

seq1  CCCTTTATTTCTAAGGTATAAGTATCTCTCCGTGGAAATATAAAATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTTCTAAGGTATAAGTATCTCTCCGTGGAAATATAAAATGTCC  800

seq1  CCTCCTCTGTTCTTCATTTCCATGAAGTAGCTCTACCAAAACCTCTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTGTTCTTCATTTCCATGAAGTAGCTCTACCAAAACCTCTCATT  850

seq1  CATGACAACCAAATCCTCTAGATCATTGAACCTGCTTGTTTTCTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACCAAATCCTCTAGATCATTGAACCTGCTTGTTTTCTTTCTAT  900

seq1  ATTGAGATGTTTCCAAGACCTCCATAACTTTTTCCTTAGGGCTCATCCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTGAGATGTTTCCAAGACCTCCATAACTTTTTCCTTAGGGCTCATCC-A  949

seq1  CTAGCGCTTGTCATTATTCTATGCAAATCATTTCCTTCAACTGTCACTTT  1000
      ||||||| ||||| |||||||||||||||||||||||| |||||||||||
seq2  CTAGCGC-TGTCA-TATTCTATGCAAATCATTTCCTTC-ACTGTCACTTT  996

seq1  ATCCAAACACTTTCATGTATAATTTATTCCTTTTGGATCTTTCATAGACT  1050
      |||| ||||||||||||||| ||||||  | |||||||||||||||||||
seq2  ATCC-AACACTTTCATGTAT-ATTTAT--CCTTTGGATCTTTCATAGACT  1042

seq1  ATTTAGAATATCTTTTACTTTTAAGTAGTAAGTACTAAAACTAAATTCAA  1100
      | |||| || || ||||||||  |||||| |||||| |||||||  ||| 
seq2  A-TTAG-ATTTC-TTTACTTT--AGTAGT-AGTACT-AAACTAA--TCAT  1083

seq1  TAAGAAACTGAACTGTGGGTACCATCCTTGTAGAATATTGGGAC  1144
      ||   ||||| ||||| |||||||| ||||||||  | ||||||
seq2  TA--GAACTG-ACTGT-GGTACCAT-CTTGTAGA--AATGGGAC  1120

seq1: chr6_28985762_28985957
seq2: B6Ng01-082A03.g_596_846

seq1  TTTTGTTTTGTTTTGTTGGTTTGTTTTTCTGAGACAGGGTTTCTCTGAGT  50
      |||||||||||||||||  ||||||||||| |||||||||||||||| ||
seq2  TTTTGTTTTGTTTTGTT--TTTGTTTTTCT-AGACAGGGTTTCTCTGTGT  47

seq1  TGCCCTGGCTGTCCTGGGACTCCCTCTGTAGAACAGGCTGACCTCAAACA  100
       ||||||| |||||||  ||||  |||||||| ||||||| |||||||| 
seq2  AGCCCTGGATGTCCTGAAACTCATTCTGTAGACCAGGCTGGCCTCAAACT  97

seq1  CAGAGATCCATCTGCCTCTGCCCCCCAAGTGCTGGGATCAAAGGTATATG  150
      |||| ||    |||||| |||| ||||| ||||||||| ||||| || ||
seq2  CAGAAATATGCCTGCCTTTGCCTCCCAAATGCTGGGATTAAAGGCATGTG  147

seq1  CCACCAC-------------------------------AC-CCATCGAAT  168
      |||||||                               || |||| ||  
seq2  CCACCACTGCCCAGCCTTATTTCTGAGTTTTTAATTCTACTCCATTGATC  197

seq1  ACTGTTT--------------------------TTTGTTTTTTTAAATCA  192
      | ||| |                          ||| |||||||||||||
seq2  AATGTGTCTATCTCTGTATAAATATCATGCAGGTTTTTTTTTTTAAATCA  247

seq1  CTTT  196
      ||||
seq2  CTTT  251