BAC Information

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BAC

Clone NameB6Ng01-082F02
Chromosome14 (Build37)
Map Location 42,651,393 - 42,652,525
singlet/doubletsinglet
Overlap genenone
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228
Downstream geneLOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F02.bB6Ng01-082F02.g
ACCDH896906DH896907
length1,2631,126
definitionDH896906|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F02, 5' end.DH896907|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcaaaccttcaaagaagacctaatacctattcccttcaaacc
attccacagaatagaaacaaaaggcataatacccaatgtgctctatggag
ccacagttacactgataccaaagccacacaaagacccaacgaggaaagaa
cttctgaatttcacttatggataccagtcaaaattatgcaattcacttct
caaaaaccaaatccaagaacaaatcatgaagatcattcatcattatcaag
tggacttcatcccatggatgcagggatggttccatatacagaaatccatc
tgcataatccactacctaaaaaatctcaaagaaaaacactacatgatcac
ttcattatatgctgaaaaagcatttgacaaaattcaacatctatttatga
taaaagtctagggaagatcaggaattcatggcccatacctaaacatagta
aaatcaatatacaacaaacctgtagccaacatcaaactaaagggagagaa
actggaagcaatctcactaaaatgagggagtcgacaaggctgccttctaa
gtccctacctattcaatattgtactcagagtcctagccagagcaattaga
caacagaaggaggacaaagggatacagattggaaaggaagaagttaaaaa
taccactatttgcagatgataggatcatatacttaactgaccacaaaagt
tccaccagacaattccttcttttttttctttcttttatttttaaaaattt
tttcctttatatattttaaactccaggttttttgtttgttttctttttgt
ttttgttttgtttggcttggttttgttttgttttgtttcgagacagggtt
tctctgtgtagccctggctgtcctggaactcactttatagaccaggctgg
cctggaactcagaaatctatctgcctctgcctcctgagtgctgggattaa
aggtgtgtgtcaccacaccaggctaaactcagattttattcctctctggt
cacccccataccattatgccataccaccacccctaaaccctgttgttcac
agatgtcccccccccacgcccatcagactttgaactcctctagggctcca
attctcttggagcttatgtgatttctctgactgaatccagacctggcagt
cccttgccattattattttggggcccttaacgctgtctgtaatggcacct
gtttggaattggcaagtgttctgtgagatctctcagaggggtccaggtta
tactgcagtgggt
gaattctactggttgtagtgtatagctgcagtcattcatttctccaagtt
ctagggttggacaaggtcactataagaaacaattgtttatggacaataag
agcttctatcatgctccaagctgagaacctaagaaacgtcactatttgca
gctaatgtaaaatgtgtagacttggggatgaacaaagctttaagttcatt
aggctcaacagccatttcagagagaagggagcaataccatactcaggtct
gtactgctgtgtgtagtacatgtcagaaaaagggagaggggagctatgtg
cttccaggacaaagcatcaagaacacttaggttgctagaatttgtattct
atactatattgtttatggtatattatattatatttatgctacaaaattat
tgttgtacatcaagaagacattcatcttcttaggagttgaaagacatgag
cagagattagatgatgttccgggtatgcaggggcagtgtatttccacaca
gaggtgtatgggcttcccctcttgctgaggttgcaccaggcagggcttca
gagaaggcagaagcacatccagagctgctcagcagagagcagaaaatgtc
taagactgtaaattaaaacttgtcctcacctgccaccaagaatatttaat
ggagggttgttaagtaaagttaaaaaacgttgagcaaaatcctgtaacat
gtgtcatccttagtcttacaaagacttaaactacacagcccccaaagaaa
catggcaacgcttgccttgataggctattacatctgaaaccgcccttcta
ccttgtcttcacagttgaccacatgttgtaattcagtgccactaaactgc
ccttgttgtttgggttttgattgcttagggattagcgtttttggttacat
tagtgtgcagatttgattttaattttctctttcttttttctggtcactat
ttgatattttgctgaagctatatacactgcatatactgatcaactgagta
cagagaaggttctttttaaacccaatactgaatgaaaagtctgcactttt
tatgaattaaaaaacaacaacaaaaagaaaacagttccaaagcttaacac
tcaaggcaagcgtttagctgggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42651393_42652525
seq2: B6Ng01-082F02.g_68_1193 (reverse)

seq1  CCATACCCAGCTAAAAACGCTGGGCTTGAGTGTGTAGGCTTTGAACTTGT  50
      |||| |||||||  ||||||| | ||||||||| || |||||| |  |||
seq2  CCAT-CCCAGCT--AAACGCTTGCCTTGAGTGT-TAAGCTTTGGAACTGT  46

seq1  TTTCTTTTTGTTTGTTTGTTTTTTAATTCAT-AAAAGTGCAGACTTTTCA  99
      ||||||||||||   |||||||||||||||| ||||||||||||||||||
seq2  TTTCTTTTTGTT--GTTGTTTTTTAATTCATAAAAAGTGCAGACTTTTCA  94

seq1  TTCAGTA-TGGGTTTAAAAAGAACC-TCTCTGTACTCAGTTGGATCAGTA  147
      ||||||| ||||||||||||||||| ||||||||||||||| ||||||||
seq2  TTCAGTATTGGGTTTAAAAAGAACCTTCTCTGTACTCAGTT-GATCAGTA  143

seq1  TATGCAGTGTATATAGCTTCAGCAAAATATCAAAATAGTGACCAGAAAAA  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGCAGTGTATATAGCTTCAGCAAAATATC-AAATAGTGACCAGAAAAA  192

seq1  AGAAAGAGAAAATAAAAATCAAATCTGCACACTAATGTAACCAAAAACGC  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAAATTAAAATCAAATCTGCACACTAATGTAACCAAAAACGC  242

seq1  TAATCCCCTAAGCAATCAAAACCCAAAACAACAAGGGCAGTTTAGTGGCA  297
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAT-CCCTAAGCAATCAAAACCC-AAACAACAAGGGCAGTTTAGTGGCA  290

seq1  CTGAATTACAACATGTGGTCAACTGTGAAGACAAGGTAGAAGGGCGGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTACAACATGTGGTCAACTGTGAAGACAAGGTAGAAGGGCGGTTT  340

seq1  CAGATGTAATAGCCTATCAAGGCAAGCGTTGCCATGTTTCTTTGGGGGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAATAGCCTATCAAGGCAAGCGTTGCCATGTTTCTTTGGGGGCT  390

seq1  GTGTAGTTTAAGTCTTTGTAAGACTAAGGATGACACATGTTACAGGATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTTAAGTCTTTGTAAGACTAAGGATGACACATGTTACAGGATTT  440

seq1  TGCTCAACGTTTTTTAACTTTACTTAACAACCCTCCATTAAATATTCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACGTTTTTTAACTTTACTTAACAACCCTCCATTAAATATTCTTG  490

seq1  GTGGCAGGTGAGGACAAGTTTTAATTTACAGTCTTAGACATTTTCTGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGTGAGGACAAGTTTTAATTTACAGTCTTAGACATTTTCTGCTC  540

seq1  TCTGCTGAGCAGCTCTGGATGTGCTTCTGCCTTCTCTGAAGCCCTGCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAGCAGCTCTGGATGTGCTTCTGCCTTCTCTGAAGCCCTGCCTG  590

seq1  GTGCAACCTCAGCAAGAGGGGAAGCCCATACACCTCTGTGTGGAAATACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACCTCAGCAAGAGGGGAAGCCCATACACCTCTGTGTGGAAATACA  640

seq1  CTGCCCCTGCATACCCGGAACATCATCTAATCTCTGCTCATGTCTTTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGCATACCCGGAACATCATCTAATCTCTGCTCATGTCTTTCAA  690

seq1  CTCCTAAGAAGATGAATGTCTTCTTGATGTACAACAATAATTTTGTAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGAAGATGAATGTCTTCTTGATGTACAACAATAATTTTGTAGCA  740

seq1  TAAATATAATATAATATACCATAAACAATATAGTATAGAATACAAATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAATATAATATACCATAAACAATATAGTATAGAATACAAATTCT  790

seq1  AGCAACCTAAGTGTTCTTGATGCTTTGTCCTGGAAGCACATAGCTCCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTAAGTGTTCTTGATGCTTTGTCCTGGAAGCACATAGCTCCCCT  840

seq1  CTCCCTTTTTCTGACATGTACTACACACAGCAGTACAGACCTGAGTATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTTCTGACATGTACTACACACAGCAGTACAGACCTGAGTATGG  890

seq1  TATTGCTCCCTTCTCTCTGAAATGGCTGTTGAGCCTAATGAACTTAAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCCCTTCTCTCTGAAATGGCTGTTGAGCCTAATGAACTTAAAGC  940

seq1  TTTGTTCATCCCCAAGTCTACACATTTTACATTAGCTGCAAATAGTGACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATCCCCAAGTCTACACATTTTACATTAGCTGCAAATAGTGACG  990

seq1  TTTCTTAGGTTCTCAGCTTGGAGCATGATAGAAGCTCTTATTGTCCATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGGTTCTCAGCTTGGAGCATGATAGAAGCTCTTATTGTCCATAA  1040

seq1  ACAATTGTTTCTTATAGTGACCTTGTCCAACCCTAGAACTTGGAGAAATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTTCTTATAGTGACCTTGTCCAACCCTAGAACTTGGAGAAATG  1090

seq1  AATGACTGCAGCTATACACTACAACCAGTAGAATTC  1133
      ||||||||||||||||||||||||||||||||||||
seq2  AATGACTGCAGCTATACACTACAACCAGTAGAATTC  1126