BAC Information

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BAC

Clone NameB6Ng01-082L11
Chromosome14 (Build37)
Map Location 112,799,981 - 112,947,540
singlet/doubletdoublet
Overlap geneEG223186
Upstream geneSlitrk5, LOC100043501
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082L11.bB6Ng01-082L11.g
ACCDH897188DH897189
length1,0531,165
definitionDH897188|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L11, 5' end.DH897189|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,799,981 - 112,801,037)(112,946,345 - 112,947,540)
sequence
gaattctctttggttggtgtttcagtctctgtgaggcaccatgtacccag
gttatttgactctgtaaatcttcttgtggtacccttgaacactctagctc
actcaattccatctcccagtattccacaagactctctatgctcctcctgc
tcttggccatgggactcttcacctgtgtctatccctgcctgatcaaattt
ctcaggagacacttacattgcagactctatttttttctttggtgcatctt
ttgttacaatggttcatcttggctgtatgccaactacagactacctacat
gtccaacttgcaatgaaggtcagcatttttagtgaattgacagttcctgc
cagaattgcagaaaatgttcatgctacatctccctcttgtcaaacaaaca
atcacaaacttttttcttctgttgtctcacagagaacattataaatggag
tacttaaatagaagctaggaaattttgcctgtgatataaatcaagaaatt
gaatttgagcataaagtatggtttttacattatatatctatatatcttct
ggtccttctgttttgttttgttttgttttgttttgttttgtttaaacgaa
tactactactggatcaacagtttaaaatacaatactcatcagatatggac
tggcattctttcactcatgtctggacatgtttgattggatggcaatttgt
atttgtaccttgtacagcctcttaattgattctgctcatagaagtctttc
tctccttgtgagttagcggagatgtgtgggacagttgcatcagaacagac
tgacaagagctttaatggaagatcaatgacttcaggcaggtatagatcca
ggcaattagtaacacagatcactaacatgaaaatgtcaggattactgtgt
catcaacttctgatagaatatgcttcaagagctttgatttgaaagcaatg
ccctagtatgtaaatcactaatgcactttattactagttaaacattattc
ctctctatcacctttattgggaaacttcctagatgttaacttaatataga
taa
gaattctctattgggtcactggagcaagccccattcaaccaaagtaggct
gcctatcacagacccacaacaaaggtaaagacagaaggagccagagaatg
acgaggatccacaagattagaaaatattgccaaagttagtaaaagaacaa
attggtagaaacaaagagaggatggattgaatcaatcaacatagaagact
agattgtacagaggctagaaccttttaggtctagggatagttagaagagg
gaaggaaatggtgtgggctcagccaagccatgtattgaattcacagtctg
gttatggctctcatcacattccttcatcagaggaaataaaagagacaatt
ataaacagtacttatttcctgattaatatacgatactcatcaataaccat
agtcctctgtcctttacttctcaggtctcaagttctacttgatatcattg
tctatacaacaaattatttctagtttctaatttttgtttagcataaccac
attgaattaactgactaatggactcattgggaaatgatcaattcatctac
atatttacagtgcttttacttctatatattacaagtctaagacttattct
aaatgaagagatggttttcccccaaacaaccagaaactactgttatatgg
taagagttcaaatgattttttaagtttcaagctatagattacttcctatc
tattagtaggcatcctgtttgtgtttatgaatttggataatttctcataa
gaagtgaaaaaggaaaatgtttgtttcccattatgaaagagtttgagaaa
ctttttttaataagcattttatttgtttacatttcaaatgatatccctgt
tcctgtttacccctccacaaccccctccctatgacatgcccacttccctc
ttccctttgcccttatgggaaatgggaagctctttagaattttaatactg
ttctcctttaatgcagtaagttatatagcaaattttcatcaaatctgtga
atattctcattattagagtcttgtggggtattcatgttctttctttaaga
ctatggtataatacaataaactcatgcttccccccgcaaaatctgtaacc
actctctatattaatcatcatggatcaatcaatgttcattttagacacta
ttgtggtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112799981_112801037
seq2: B6Ng01-082L11.b_46_1098

seq1  GAATTCTCTTTGGTTGGTGTTTCAGTCTCTGTGAGGCACCATGTACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGTTGGTGTTTCAGTCTCTGTGAGGCACCATGTACCCAG  50

seq1  GTTATTTGACTCTGTAAATCTTCTTGTGGTACCCTTGAACACTCTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGACTCTGTAAATCTTCTTGTGGTACCCTTGAACACTCTAGCTC  100

seq1  ACTCAATTCCATCTCCCAGTATTCCACAAGACTCTCTATGCTCCTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTCCATCTCCCAGTATTCCACAAGACTCTCTATGCTCCTCCTGC  150

seq1  TCTTGGCCATGGGACTCTTCACCTGTGTCTATCCCTGCCTGATCAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCATGGGACTCTTCACCTGTGTCTATCCCTGCCTGATCAAATTT  200

seq1  CTCAGGAGACACTTACATTGCAGACTCTATTTTTTTCTTTGGTGCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGACACTTACATTGCAGACTCTATTTTTTTCTTTGGTGCATCTT  250

seq1  TTGTTACAATGGTTCATCTTGGCTGTATGCCAACTACAGACTACCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAATGGTTCATCTTGGCTGTATGCCAACTACAGACTACCTACAT  300

seq1  GTCCAACTTGCAATGAAGGTCAGCATTTTTAGTGAATTGACAGTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTTGCAATGAAGGTCAGCATTTTTAGTGAATTGACAGTTCCTGC  350

seq1  CAGAATTGCAGAAAATGTTCATGCTACATCTCCCTCTTGTCAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGCAGAAAATGTTCATGCTACATCTCCCTCTTGTCAAACAAACA  400

seq1  ATCACAAACTTTTTTCTTCTGTTGTCTCACAGAGAACATTATAAATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACTTTTTTCTTCTGTTGTCTCACAGAGAACATTATAAATGGAG  450

seq1  TACTTAAATAGAAGCTAGGAAATTTTGCCTGTGATATAAATCAAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATAGAAGCTAGGAAATTTTGCCTGTGATATAAATCAAGAAATT  500

seq1  GAATTTGAGCATAAAGTATGGTTTTTACATTATATATCTATATATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGCATAAAGTATGGTTTTTACATTATATATCTATATATCTTCT  550

seq1  GGTCCTTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAAACGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAAACGAA  600

seq1  TACTACTACTGGATCAACAGTTTAAAATACAATACTCATCAGATATGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTACTGGATCAACAGTTTAAAATACAATACTCATCAGATATGGAC  650

seq1  TGGCATTCTTTCACTCATGTCTGGACATGTTTGATTGGATGGCAATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTTTCACTCATGTCTGGACATGTTTGATTGGATGGCAATTTGT  700

seq1  ATTTGTACCTTGTACAGCCTCTTAATTGATTCTGCTCATAGAAGTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACCTTGTACAGCCTCTTAATTGATTCTGCTCATAGAAGTCTTTC  750

seq1  TCTCCTTGTGAGTTAGCGGAGATGTGTGGGACAGTTGCATCAGAACAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTGAGTTAGCGGAGATGTGTGGGACAGTTGCATCAGAACAGAC  800

seq1  TGACAAGAGCTTTAATGGAAGATCAATGACTTCAGGCAGGTATAGATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAGCTTTAATGGAAGATCAATGACTTCAGGCAGGTATAGATCCA  850

seq1  GGCAATTAGTAACACAGATCACTAACATGAAAATGTCAGGATTACTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTAGTAACACAGATCACTAACATGAAAATGTCAGGATTACTGTGT  900

seq1  CATCAACTTCTGATAGAATATGCTTCAAAGAGCTTTGATTTGAAAAGCAA  950
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CATCAACTTCTGATAGAATATGCTTC-AAGAGCTTTGATTTG-AAAGCAA  948

seq1  TGCACTAGTATTGTAAATCACTAATGCACTTTATTACTAGTTAAACATTA  1000
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGTA-TGTAAATCACTAATGCACTTTATTACTAGTTAAACATTA  997

seq1  TTCCTCTCTAATTCA-CTTTATTGGGAAACTTCTTAGATGTTACCTAAAT  1049
      ||||||||||  ||| ||||||||||||||||| ||||||||| || |||
seq2  TTCCTCTCTA--TCACCTTTATTGGGAAACTTCCTAGATGTTAACTTAAT  1045

seq1  ATAGATAA  1057
      ||||||||
seq2  ATAGATAA  1053

seq1: chr14_112946345_112947540
seq2: B6Ng01-082L11.g_69_1233 (reverse)

seq1  ACACACACAC----ATA-TGTCTAAAAATGAACAATTGGATTAGATACCA  45
      ||||||||||    ||| ||||| ||||||||||  | |||| ||| |||
seq2  ACACACACACCACAATAGTGTCT-AAAATGAACA--TTGATT-GAT-CCA  45

seq1  TGAATTTGATTAATAATAGGGAGGAGTGGTGTACAGAATATTTTGCGGGG  95
      |||   |||||||| ||||    ||||||| |||||   |||||||||||
seq2  TGA---TGATTAAT-ATAG---AGAGTGGT-TACAG---ATTTTGCGGGG  84

seq1  GGGAAAGGGAATGGAGATATATTGTAATTATACCATAGTCTTTAAAAGAA  145
      || |    | || ||| | |||||| ||||||||||||||||  |||| |
seq2  GGAA----GCAT-GAG-TTTATTGT-ATTATACCATAGTCTT--AAAG-A  124

seq1  AAGAACATGAAATTACCCCACAAAGGACTCTAATAATTGAGAATAATTCA  195
      |||||||||||  ||||||||||  ||||||||||| ||||||| |||||
seq2  AAGAACATGAA--TACCCCACAA--GACTCTAATAA-TGAGAAT-ATTCA  168

seq1  CAGATTTGAATGAAAATTTGCTATATAACTTACCTGCATTAAAGGAAGAA  245
      |||||||| ||||||||||||||||||||||| |||||||||||| ||||
seq2  CAGATTTG-ATGAAAATTTGCTATATAACTTA-CTGCATTAAAGG-AGAA  215

seq1  CAGTATTAAAATTCTAAAGAGCTTCCCATTTCCCATAAGGGCAAAGGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAAAATTCTAAAGAGCTTCCCATTTCCCATAAGGGCAAAGGGAA  265

seq1  GAGGGAAGTGGGCATGTCATAGGGAGGGGGTTGTGGAGGGGTAAACAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGTGGGCATGTCATAGGGAGGGGGTTGTGGAGGGGTAAACAGGA  315

seq1  ACAGGGATATCATTTGAAATGTAAACAAATAAAATGCTTATTTAAAAAAA  395
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGGGATATCATTTGAAATGTAAACAAATAAAATGCTTA-TTAAAAAAA  364

seq1  GTTTCTCAAACTCTTTCATAATGGGAAACAAACATTTTCCTTTTTCACTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAACTCTTTCATAATGGGAAACAAACATTTTCCTTTTTCACTT  414

seq1  CTTATGAGAAATTATCCAAATTCATAAACACAAACAGGATGCCTACTAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGAAATTATCCAAATTCATAAACACAAACAGGATGCCTACTAAT  464

seq1  AGATAGGAAGTAATCTATAGCTTGAAACTTAAAAAATCATTTGAACTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGTAATCTATAGCTTGAAACTTAAAAAATCATTTGAACTCTT  514

seq1  ACCATATAACAGTAGTTTCTGGTTGTTTGGGGGAAAACCATCTCTTCATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAACAGTAGTTTCTGGTTGTTTGGGGGAAAACCATCTCTTCATT  564

seq1  TAGAATAAGTCTTAGACTTGTAATATATAGAAGTAAAAGCACTGTAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAGTCTTAGACTTGTAATATATAGAAGTAAAAGCACTGTAAATA  614

seq1  TGTAGATGAATTGATCATTTCCCAATGAGTCCATTAGTCAGTTAATTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGAATTGATCATTTCCCAATGAGTCCATTAGTCAGTTAATTCAA  664

seq1  TGTGGTTATGCTAAACAAAAATTAGAAACTAGAAATAATTTGTTGTATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATGCTAAACAAAAATTAGAAACTAGAAATAATTTGTTGTATAG  714

seq1  ACAATGATATCAAGTAGAACTTGAGACCTGAGAAGTAAAGGACAGAGGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATATCAAGTAGAACTTGAGACCTGAGAAGTAAAGGACAGAGGAC  764

seq1  TATGGTTATTGATGAGTATCGTATATTAATCAGGAAATAAGTACTGTTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTATTGATGAGTATCGTATATTAATCAGGAAATAAGTACTGTTTA  814

seq1  TAATTGTCTCTTTTATTTCCTCTGATGAAGGAATGTGATGAGAGCCATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCTCTTTTATTTCCTCTGATGAAGGAATGTGATGAGAGCCATAA  864

seq1  CCAGACTGTGAATTCAATACATGGCTTGGCTGAGCCCACACCATTTCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTGAATTCAATACATGGCTTGGCTGAGCCCACACCATTTCCTT  914

seq1  CCCTCTTCTAACTATCCCTAGACCTAAAAGGTTCTAGCCTCTGTACAATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTAACTATCCCTAGACCTAAAAGGTTCTAGCCTCTGTACAATC  964

seq1  TAGTCTTCTATGTTGATTGATTCAATCCATCCTCTCTTTGTTTCTACCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTATGTTGATTGATTCAATCCATCCTCTCTTTGTTTCTACCAA  1014

seq1  TTTGTTCTTTTACTAACTTTGGCAATATTTTCTAATCTTGTGGATCCTCG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTTTACTAACTTTGGCAATATTTTCTAATCTTGTGGATCCTCG  1064

seq1  TCATTCTCTGGCTCCTTCTGTCTTTACCTTTGTTGTGGGTCTGTGATAGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTGGCTCCTTCTGTCTTTACCTTTGTTGTGGGTCTGTGATAGG  1114

seq1  CAGCCTACTTTGGTTGAATGGGGCTTGCTCCAGTGACCCAGTAGAGAATT  1195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCCTACTTTGGTTGAATGGGGCTTGCTCCAGTGACCCAATAGAGAATT  1164

seq1  C  1196
      |
seq2  C  1165