BAC Information

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BAC

Clone NameB6Ng01-082L16
Chromosome14 (Build37)
Map Location 65,659,656 - 65,834,301
singlet/doubletdoublet
Overlap geneExtl3, Fzd3, LOC668286
Upstream gene4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e
Downstream geneFbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082L16.bB6Ng01-082L16.g
ACCDH897198DH897199
length1,142895
definitionDH897198|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L16, 5' end.DH897199|Mus musculus domesticus DNA, BAC clone: B6Ng01-082L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,659,656 - 65,660,808)(65,833,402 - 65,834,301)
sequence
gaattcaccaagaactgggtgacattcctcgggtaggggatgaaggggtc
aggcttccagataaggtcaggcagagaagaagaggaagccatactgaaaa
agggagcccctccgttttgcttggagctcagggagctgtctcgtcatggt
agacgttaatagcagggtttcccaacacctactgagcaggtgcagttcac
agagaatcggacagtcactgcctacctgtgatccaggcccttccagtgta
aaccagtgagtgctggctgctcttctagtcttctctgtgccttgtcacac
tggacacgggatcaggagggcagggagcacaacctgggtgacaggttgtt
cgtgaacttattggagtaaaggctgctgttactcttgcatagccttccgt
agctcgttgcttgcctgttttgagagagggtcctgacatacgtacatcat
gctgacatcaccaccatgcctgtcctttaacaagtctttccccaaagggt
taaagcatgtatctactgctataacaaatgaccccactcctagcatcttc
aaaagagccgacatttcttcccttgcggttttggggctttgctagagttc
ccacactggagtcgtctttcctcacagctggatgtggggcctgaaataca
gagtttgagtgaatgtcccaaaaataggcagtttgtggctcctgccctct
ctgcatcctgtgtgaggctcaggccaaggagacgggactcctagtctatt
cctctcacgcaagggcacataaccccctcatccccacagcttccagccca
cagcctcacggttatccttaaaaggcaggagttgacttttccagataaca
gtgaacgaccaacaggttccctcactgtgatggtgcactgaagagcgaag
ctacctggtaataaaacggatgactctccttctcagataccaggcagcag
acagctgctggcttgtgctttcagccacctaacgaagtaggtggtacgtt
ttcagctctcccagtggggtactacatcgatggtgttattttgaacctag
ccaagggtgaaagcaccgactctggctcttgacaaagccacaagctgaat
ctggatggctaaagaactgaacggcaggtggctgtgcctgtg
gaattcaaggccagacaaattctctgtctaaaaaacaaaagccccaaaat
ttaaaaaacaacaaaaaacaaactgtaaactgctcagaggaaaagctgct
cttcatcagtatatctatgatttacattctacagacttttctagacactt
tggtcctatgtttgctaatgttcagaaatgtctaccccagaccctgtctg
cagtcagtgaagcatacctcttgtgctcaccaaagcctttgctttgaatt
agatagtcttcgacttggttttgattgatagacttcaaacaaaggtgact
gagtcttcatgaacctgaagtactcatgtggaaaaaaaggatcttgttcc
ggatttgtcaagtaaaactgtagaatgcctgactgaaagaaaggatgaca
ggagggtaagagagaaggcaagacttggaggcactcttgggatgagtata
gaaatttttttttccatttttattaggtatttagctcatttacatttcca
atgctataccaaaagtcccccatacccacccacccccactcccctaccca
cccactccccctttttggccctggcgttcccctgtactggggcatataaa
gtttgcgtgtccaatgggcctctctttccagtgatgactgactaggccat
cttttgatacatatgcagctagagtcaagagctccggggtactggttagt
tcataatgttgttccacctatagggttgcagatccctttagctccttggg
tatttctctagttcctcctttgggagccctgtgacccatcaatagctgac
tggaatcatcacttctgtgttgctaagccccggcatagtcttaccacaga
tagctacatccgggatctttcgataaaatctgctaatgtatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65659656_65660808
seq2: B6Ng01-082L16.b_48_1189

seq1  GAATTCACCAAGAACTGGGTGACATTCCTCGGGTAGGGGATGAAGGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGAACTGGGTGACATTCCTCGGGTAGGGGATGAAGGGGTC  50

seq1  AGGCTTCCAGATAAGGTCAGGCAGAGAAGAAGAGGAAGCCATACTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCAGATAAGGTCAGGCAGAGAAGAAGAGGAAGCCATACTGAAAA  100

seq1  AGGGAGCCCCTCCGTTTTGCTTGGAGCTCAGGGAGCTGTCTCGTCATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCCCTCCGTTTTGCTTGGAGCTCAGGGAGCTGTCTCGTCATGGT  150

seq1  AGACGTTAATAGCAGGGTTTCCCAACACCTACTGAGCAGGTGCAGTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTAATAGCAGGGTTTCCCAACACCTACTGAGCAGGTGCAGTTCAC  200

seq1  AGAGAATCGGACAGTCACTGCCTACCTGTGATCCAGGCCCTTCCAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCGGACAGTCACTGCCTACCTGTGATCCAGGCCCTTCCAGTGTA  250

seq1  AACCAGTGAGTGCTGGCTGCTCTTCTAGTCTTCTCTGTGCCTTGTCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGAGTGCTGGCTGCTCTTCTAGTCTTCTCTGTGCCTTGTCACAC  300

seq1  TGGACACGGGATCAGGAGGGCAGGGAGCACAACCTGGGTGACAGGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACGGGATCAGGAGGGCAGGGAGCACAACCTGGGTGACAGGTTGTT  350

seq1  CGTGAACTTATTGGAGTAAAGGCTGCTGTTACTCTTGCATAGCCTTCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACTTATTGGAGTAAAGGCTGCTGTTACTCTTGCATAGCCTTCCGT  400

seq1  AGCTCGTTGCTTGCCTGTTTTGAGAGAGGGTCCTGACATACGTACATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTTGCTTGCCTGTTTTGAGAGAGGGTCCTGACATACGTACATCAT  450

seq1  GCTGACATCACCACCATGCCTGTCCTTTAACAAGTCTTTCCCCAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATCACCACCATGCCTGTCCTTTAACAAGTCTTTCCCCAAAGGGT  500

seq1  TAAAGCATGTATCTACTGCTATAACAAATGACCCCACTCCTAGCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATGTATCTACTGCTATAACAAATGACCCCACTCCTAGCATCTTC  550

seq1  AAAAGAGCCGACATTTCTTCCCTTGCGGTTTTGGGGCTTTGCTAGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCCGACATTTCTTCCCTTGCGGTTTTGGGGCTTTGCTAGAGTTC  600

seq1  CCACACTGGAGTCGTCTTTCCTCACAGCTGGATGTGGGGCCTGAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGGAGTCGTCTTTCCTCACAGCTGGATGTGGGGCCTGAAATACA  650

seq1  GAGTTTGAGTGAATGTCCCAAAAATAGGCAGTTTGTGGCTCCTGCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGTGAATGTCCCAAAAATAGGCAGTTTGTGGCTCCTGCCCTCT  700

seq1  CTGCATCCTGTGTGAGGCTCAGGCCAAGGAGACGGGACTCCTAGTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTGTGTGAGGCTCAGGCCAAGGAGACGGGACTCCTAGTCTATT  750

seq1  CCTCTCAGGCAAGGGCACATAACCCCCTCATCCCCACAGCTTCCAGCCCA  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACGCAAGGGCACATAACCCCCTCATCCCCACAGCTTCCAGCCCA  800

seq1  CAGCCTCACGGTTATCCTTAAAAGGCAGGAGTTGACTTTTCCAGATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCACGGTTATCCTTAAAAGGCAGGAGTTGACTTTTCCAGATAACA  850

seq1  GTGAACGACCAACAGGTTCCCTCACTGTGATGGTGCACTGAAGAGCGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACGACCAACAGGTTCCCTCACTGTGATGGTGCACTGAAGAGCGAAG  900

seq1  CTACCTGGTAATAAAACGGATGACTCTCCTTCTCAGATACCAGGCAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTACCTGGTAATAAAACGGATGACTCTCCTTCTCAGATACCAGGCAGCA-  949

seq1  GACAGGCTGCTGGCTTGTGCTTTCAGCCACCTAACGGAAGGTAGGTGGTA  1000
      |||| |||||||||||||||||||||||||||||||  | ||||||||||
seq2  GACA-GCTGCTGGCTTGTGCTTTCAGCCACCTAACG--AAGTAGGTGGTA  996

seq1  CGTTTTCAGGCTCTCCCCAGTGGGGTACTACATCGAT-GTGTTATTTTGA  1049
      |||||||| ||||| |||||||||||||||||||||| ||||||||||||
seq2  CGTTTTCA-GCTCT-CCCAGTGGGGTACTACATCGATGGTGTTATTTTGA  1044

seq1  ACCTTAGCCAAGGGTGAAAGCAACCGACTCTGGCTCTGGACAAAGCAAC-  1098
      ||| ||||||||||||||||| ||||||||||||||| |||||||| || 
seq2  ACC-TAGCCAAGGGTGAAAGC-ACCGACTCTGGCTCTTGACAAAGCCACA  1092

seq1  AGCTGAATCTGGATGGGCCTTACAGAACTGAGCCGCAGGTGGCTTGTGCC  1148
      ||||||||||||||||    || |||||||| | ||||||||| |||| |
seq2  AGCTGAATCTGGATGG---CTAAAGAACTGAACGGCAGGTGGC-TGTG-C  1137

seq1  CTGTG  1153
      |||||
seq2  CTGTG  1142

seq1: chr14_65833402_65834301
seq2: B6Ng01-082L16.g_69_963 (reverse)

seq1  TTGCATACACTAGCAAGATTTTATCGAAAGGACCCGGATGTAGCTATCTC  50
      ||||||||| |||| |||||||||||||||  ||||||||||||||||| 
seq2  TTGCATACATTAGC-AGATTTTATCGAAAGATCCCGGATGTAGCTATCTG  49

seq1  TTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGT  100
      | || ||||||||||||||| |||| ||||||||||| ||||||  ||||
seq2  TGGTAAGACTATGCCGGGGCTTAGC-AACACAGAAGT-GATGATTCCAGT  97

seq1  CAGCTATTGGATGGGTCACAGGGCTCCCAATGGAGGAACTAGAGAAAATA  150
      |||||||| ||||||||||||||||||||| ||||||||||||| |||||
seq2  CAGCTATT-GATGGGTCACAGGGCTCCCAAAGGAGGAACTAGAG-AAATA  145

seq1  CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGA  195

seq1  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG  245

seq1  ATGGCCTAGTCAGTCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTCAGTCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAC  295

seq1  TTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGG  345

seq1  TGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCAT  395

seq1  TGGAAATGTAAATGAGCTAAATACCTAATAAAAATGGAAAAAAAAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAAATGAGCTAAATACCTAATAAAAATGGAAAAAAAAATTTC  445

seq1  TATACTCATCCCAAGAGTGCCTCCAAGTCTTGCCTTCTCTCTTACCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCATCCCAAGAGTGCCTCCAAGTCTTGCCTTCTCTCTTACCCTCC  495

seq1  TGTCATCCTTTCTTTCAGTCAGGCATTCTACAGTTTTACTTGACAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTTTCTTTCAGTCAGGCATTCTACAGTTTTACTTGACAAATCC  545

seq1  GGAACAAGATCCTTTTTTTCCACATGAGTACTTCAGGTTCATGAAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGATCCTTTTTTTCCACATGAGTACTTCAGGTTCATGAAGACTC  595

seq1  AGTCACCTTTGTTTGAAGTCTATCAATCAAAACCAAGTCGAAGACTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTTTGTTTGAAGTCTATCAATCAAAACCAAGTCGAAGACTATCT  645

seq1  AATTCAAAGCAAAGGCTTTGGTGAGCACAAGAGGTATGCTTCACTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAGCAAAGGCTTTGGTGAGCACAAGAGGTATGCTTCACTGACTG  695

seq1  CAGACAGGGTCTGGGGTAGACATTTCTGAACATTAGCAAACATAGGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGTCTGGGGTAGACATTTCTGAACATTAGCAAACATAGGACCA  745

seq1  AAGTGTCTAGAAAAGTCTGTAGAATGTAAATCATAGATATACTGATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTAGAAAAGTCTGTAGAATGTAAATCATAGATATACTGATGAAG  795

seq1  AGCAGCTTTTCCTCTGAGCAGTTTACAGTTTGTTTTTTGTTGTTTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTTCCTCTGAGCAGTTTACAGTTTGTTTTTTGTTGTTTTTTAA  845

seq1  ATTTTGGGGCTTTTGTTTTTTAGACAGAGAATTTGTCTGGCCTTGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGCTTTTGTTTTTTAGACAGAGAATTTGTCTGGCCTTGAATTC  895