BAC Information

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BAC

Clone NameB6Ng01-082N15
Chromosome14 (Build37)
Map Location 116,277,421 - 116,421,540
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N15.bB6Ng01-082N15.g
ACCDH897285DH897286
length1,1811,125
definitionDH897285|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N15, 5' end.DH897286|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,420,347 - 116,421,540)(116,277,421 - 116,278,563)
sequence
gaattcaaaaaaaaaggaaggtcaaaagatttatggaagacgtcagtgac
aactttggcctccacgtgcataaaagcataggttcatataatttgaattc
acatgtacacacatgtgtgaatatgcacatacatgtatctagaaaaggat
cagtcttaactgtgaattttactggcttgtggaggagtaatctgggatgg
tgtttcttaccaaaatattctttaaaatgctcttgtctataaatatcagg
aggaatatgtgtagataagcactgtaccataccgtcttattaaacatttg
ttgtttttctttaatagaattagggtattaacatttgaaaatacatctca
aatcctttgacacctttagcagagcactcgttatggtatcttctgaaatg
gtactataaaaatcaattctaattacaatatatttcatgacataggcaaa
aaataaggagatgaattgttaatggaaagtgattatgttataaactccac
agtttatgatagaaggtctgaagtttggtgttattactactgctaattca
tttttattgaggttcattgagcaaatagctcaagactcataaagcagttt
ccctgaaatcatttatagtctcttcttcccagcttcagtcagtcagtctt
tgtttattgataacattctctgctagatatacaactctcagtacaaaagg
aatacagcaaagttacagtccttagagtagcttaggagatgtgagataac
atagctattaccacaattacaatctcatttttaactgcccttcctaattt
gctaattataacctttgtagagacagaaatttatcttatttatcactgtt
tcaccacaggctcactctagtgtcttcaaactaatattatgcagtaaatt
taccttaatgtgaatgtaatctctacattttaccaacaaatgctggtaag
gcaagcagtgccagagcatactacaaaacttcctactttcatgcagaata
taaacagaaatccacaaatagaaactgttaacagaaatttagtgatccct
cttctttgtaggacacaaatggaaattattgatagaaagaatgcctggct
ttagtacttagtcaaattctttttgaaagaccaaatgtaccctaggacta
cgtaattgtagtctacatgctgaatgcaatc
gaattcagtagatatataataatgagacatgggcttcagattttttgttt
tgttttgttttttgtttgtttgtttgcttgtttgtttgtttgttttttgt
ttttctagacagggtttctctgtatagccctggctcattttgtagaccag
actggcctcaaactaaatctgtctgcttctgcctcctgagtgctgggatt
aaaggcttgtgctaccatgcctggtttatttatttatttatttattttgg
tgggcttcagatttttatgaaaacacattatcaactaaaattttatttgt
ccttatttgttcaagaattggttttgttaccatttttttcaaggtgtggt
aaacagttggtacaaagcaaatagtcagaataacacttgtcactgaatgt
agatttttaaatagaataagcaattaaagtatcataattcatactcatac
atttcatcatgctattccatttttataaataatgtcatagaaaatgagat
gtccctaggaaataggcttatagatatatcagtagaagcaaagcattatg
gatcaaggaagaccctttacaatgcaatactcgagtggaatctcctgctt
cagaaattttgggtaagtttatcttcttcaaatattggctaccacaagag
tacagatgagatggaaatgtccgcatgtgacttgtaagagttttctatgt
aaattatctgaacaatttagtagtcagtcagtatatagtagataaaaatg
tagttatgattgagctatgaacaaattcacacactcaatgctcttccata
aaacaagttaattcttgctaactatcagtcatattttagtccatttctct
ttttttttctccataattccctatagtttattttattctttgccaacaaa
gaaaactccaagggcaaaataactatctatatgaccattaagtatttctc
aggagtccctattcaatctagttaaatggaggctatagtctaatgtttgg
agacacctggtgggtctgtaataggactaggagatgcctatgggtactcc
aagaaactctagataatgtattctctcataggtggtaaagtgggtcatca
gctagcatcaccctcaccttcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116420347_116421540
seq2: B6Ng01-082N15.b_50_1230 (reverse)

seq1  GATTGCAATCAAGGCATGTAGACTACAATTTACTGTAAGTCCTAGGGTTA  50
      ||||||| |||  ||||||||||||||| |||| || |||||||||| ||
seq2  GATTGCATTCA--GCATGTAGACTACAA-TTAC-GT-AGTCCTAGGG-TA  44

seq1  CATTTTTGTCCTTTCAAAAAAGAATTTGACTAAGTTAACTAAAGCCAGGC  100
      ||  ||||  ||||| |||||||||||||||||||  |||||||||||||
seq2  CA--TTTGGTCTTTC-AAAAAGAATTTGACTAAGT--ACTAAAGCCAGGC  89

seq1  ATTCCTTTCTATCAATAATATCCATTTGTGTTCTACAGAGAAGAGTGATC  150
      ||| ||||||||||||||| ||||||||||| ||||| ||||||| ||||
seq2  ATT-CTTTCTATCAATAATTTCCATTTGTGTCCTACAAAGAAGAGGGATC  138

seq1  ACTAGATTTCTGTTAACAGTTTCTATTTGTGGATTTCTGTTTATATTCTG  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTCTGTTAACAGTTTCTATTTGTGGATTTCTGTTTATATTCTG  188

seq1  CATGAAAGTAGGAAGTTTTTGTAGTATGCTCTGGCACTGCTTGCCTTACC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTAGGAAG-TTTTGTAGTATGCTCTGGCACTGCTTGCCTTACC  237

seq1  AGCATTTGTTGGTAAAATGTAGAGATTACATTCACATTAAGGTAAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTTGGTAAAATGTAGAGATTACATTCACATTAAGGTAAATTTA  287

seq1  CTGCATAATATTAGTTTGAAGACACTAGAGTGAGCCTGTGGTGAAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAATATTAGTTTGAAGACACTAGAGTGAGCCTGTGGTGAAACAGT  337

seq1  GATAAATAAGATAAATTTCTGTCTCTACAAAGGTTATAATTAGCAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAAGATAAATTTCTGTCTCTACAAAGGTTATAATTAGCAAATTA  387

seq1  GGAAGGGCAGTTAAAAATGAGATTGTAATTGTGGTAATAGCTATGTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCAGTTAAAAATGAGATTGTAATTGTGGTAATAGCTATGTTATC  437

seq1  TCACATCTCCTAAGCTACTCTAAGGACTGTAACTTTGCTGTATTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTCCTAAGCTACTCTAAGGACTGTAACTTTGCTGTATTCCTTTT  487

seq1  GTACTGAGAGTTGTATATCTAGCAGAGAATGTTATCAATAAACAAAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGAGTTGTATATCTAGCAGAGAATGTTATCAATAAACAAAGACT  537

seq1  GACTGACTGAAGCTGGGAAGAAGAGACTATAAATGATTTCAGGGAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTGAAGCTGGGAAGAAGAGACTATAAATGATTTCAGGGAAACTG  587

seq1  CTTTATGAGTCTTGAGCTATTTGCTCAATGAACCTCAATAAAAATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAGTCTTGAGCTATTTGCTCAATGAACCTCAATAAAAATGAATT  637

seq1  AGCAGTAGTAATAACACCAAACTTCAGACCTTCTATCATAAACTGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGTAATAACACCAAACTTCAGACCTTCTATCATAAACTGTGGAG  687

seq1  TTTATAACATAATCACTTTCCATTAACAATTCATCTCCTTATTTTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACATAATCACTTTCCATTAACAATTCATCTCCTTATTTTTTGCC  737

seq1  TATGTCATGAAATATATTGTAATTAGAATTGATTTTTATAGTACCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATGAAATATATTGTAATTAGAATTGATTTTTATAGTACCATTTC  787

seq1  AGAAGATACCATAACGAGTGCTCTGCTAAAGGTGTCAAAGGATTTGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACCATAACGAGTGCTCTGCTAAAGGTGTCAAAGGATTTGAGAT  837

seq1  GTATTTTCAAATGTTAATACCCTAATTCTATTAAAGAAAAACAACAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCAAATGTTAATACCCTAATTCTATTAAAGAAAAACAACAAATG  887

seq1  TTTAATAAGACGGTATGGTACAGTGCTTATCTACACATATTCCTCCTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGACGGTATGGTACAGTGCTTATCTACACATATTCCTCCTGAT  937

seq1  ATTTATAGACAAGAGCATTTTAAAGAATATTTTGGTAAGAAACACCATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGACAAGAGCATTTTAAAGAATATTTTGGTAAGAAACACCATCC  987

seq1  CAGATTACTCCTCCACAAGCCAGTAAAATTCACAGTTAAGACTGATCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACTCCTCCACAAGCCAGTAAAATTCACAGTTAAGACTGATCCTT  1037

seq1  TTCTAGATACATGTATGTGCATATTCACACATGTGTGTACATGTGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATACATGTATGTGCATATTCACACATGTGTGTACATGTGAATTC  1087

seq1  AAATTATATGAACCTATGCTTTTATGCACGTGGAGGCCAAAGTTGTCACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATGAACCTATGCTTTTATGCACGTGGAGGCCAAAGTTGTCACT  1137

seq1  GACGTCTTCCATAAATCTTTTGACCTTCCTTTTTTTTTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTCCATAAATCTTTTGACCTTCCTTTTTTTTTGAATTC  1181

seq1: chr14_116277421_116278563
seq2: B6Ng01-082N15.g_68_1192

seq1  GAATTCAGTAGATATATAATAATGAGACATGGGCTTCAGATTTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGATATATAATAATGAGACATGGGCTTCAGATTTTTTGTTT  50

seq1  TGTTTTGTTTTTTGTTTGTTTGTTTGCTTGTTTGTTTGTTTGTTTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTTGTTTGTTTGTTTGCTTGTTTGTTTGTTTGTTTTTTGT  100

seq1  TTTTCTAGACAGGGTTTCTCTGTATAGCCCTGGCTCATTTTGTAGACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGACAGGGTTTCTCTGTATAGCCCTGGCTCATTTTGTAGACCAG  150

seq1  ACTGGCCTCAAACTAAATCTGTCTGCTTCTGCCTCCTGAGTGCTGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTCAAACTAAATCTGTCTGCTTCTGCCTCCTGAGTGCTGGGATT  200

seq1  AAAGGCTTGTGCTACCATGCCTGGTTTATTTATTTATTTATTTATTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTGTGCTACCATGCCTGGTTTATTTATTTATTTATTTATTTTGG  250

seq1  TGGGCTTCAGATTTTTATGAAAACACATTATCAACTAAAATTTTATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCAGATTTTTATGAAAACACATTATCAACTAAAATTTTATTTGT  300

seq1  CCTTATTTGTTCAAGAATTGGTTTTGTTACCATTTTTTTCAAGGTGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTGTTCAAGAATTGGTTTTGTTACCATTTTTTTCAAGGTGTGGT  350

seq1  AAACAGTTGGTACAAAGCAAATAGTCAGAATAACACTTGTCACTGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGGTACAAAGCAAATAGTCAGAATAACACTTGTCACTGAATGT  400

seq1  AGATTTTTAAATAGAATAAGCAATTAAAGTATCATAATTCATACTCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTAAATAGAATAAGCAATTAAAGTATCATAATTCATACTCATAC  450

seq1  ATTTCATCATGCTATTCCATTTTTATAAATAATGTCATAGAAAATGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCATGCTATTCCATTTTTATAAATAATGTCATAGAAAATGAGAT  500

seq1  GTCCCTAGGAAATAGGCTTATAGATATATCAGTAGAAGCAAAGCATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGGAAATAGGCTTATAGATATATCAGTAGAAGCAAAGCATTATG  550

seq1  GATCAAGGAAGACCCTTTACAATGCAATACTCGAGTGGAATCTCCTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAAGACCCTTTACAATGCAATACTCGAGTGGAATCTCCTGCTT  600

seq1  CAGAAATTTTGGGTAAGTTTATCTTCTTCAAATATTGGCTACCACAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTTGGGTAAGTTTATCTTCTTCAAATATTGGCTACCACAAGAG  650

seq1  TACAGATGAGATGGAAATGTCCGCATGTGACTTGTAAGAGTTTTCTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAGATGGAAATGTCCGCATGTGACTTGTAAGAGTTTTCTATGT  700

seq1  AAATTATCTGAACAATTTAGTAGTCAGTCAGTATATAGTAGATAAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTGAACAATTTAGTAGTCAGTCAGTATATAGTAGATAAAAATG  750

seq1  TAGTTATGATTGAGCTATGAACAAATTCACACACTCAATGCTCTTCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGATTGAGCTATGAACAAATTCACACACTCAATGCTCTTCCATA  800

seq1  AAACAAGTTAATTCTTGCTAACTATCAGTCATATTTTAGTCCATTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTAATTCTTGCTAACTATCAGTCATATTTTAGTCCATTTCTCT  850

seq1  TTTTTTTTCTCCATAATTCCCTATAGTTTATTTTATTCTTTGCCAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTCCATAATTCCCTATAGTTTATTTTATTCTTTGCCAACAAA  900

seq1  GAAAACTCCAAGGGCAAAATAACTATCTATATGACCATTAAGTATTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAACTCCAAGGGCAAAATAACTATCTATATGACCATTAAGTATTT-CT  949

seq1  CCAGAGTCCCCTATTCAATCTAGTTAAAATGAGGCTAATTAGTCTTAATT  1000
      |  |||| ||||||||||||||||||||  |||||||  ||||||  | |
seq2  CAGGAGT-CCCTATTCAATCTAGTTAAATGGAGGCTA--TAGTCT--AAT  994

seq1  GTTTGGAGAACACCT-GTGAGTCTGTTAATA-GACTAAGAGATGCCTAAT  1048
      |||||||| |||||| ||| ||||| ||||| ||||| ||||||||| ||
seq2  GTTTGGAG-ACACCTGGTGGGTCTG-TAATAGGACTAGGAGATGCCT-AT  1041

seq1  GGTAACTCCAGAAAACCTCTTAGATAAATGTAATTCTCTCATTAGGTGGT  1098
      ||  |||||| | || ||| ||||| ||||| ||||||||| ||||||||
seq2  GGGTACTCCA-AGAAACTC-TAGAT-AATGT-ATTCTCTCA-TAGGTGGT  1086

seq1  AAAAGTGGTTCAAATTCAGCTAGCATCACCCTCACACTTTCATTG  1143
       ||||||| |||   |||||||||||||||||  ||| |||||||
seq2  -AAAGTGGGTCA---TCAGCTAGCATCACCCT--CACCTTCATTG  1125