BAC Information

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BAC

Clone NameB6Ng01-083G17
Chromosome14 (Build37)
Map Location 85,271,001 - 85,436,517
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083G17.bB6Ng01-083G17.g
ACCDH897686DH897687
length1,0891,122
definitionDH897686|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G17, 5' end.DH897687|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,271,001 - 85,272,098)(85,435,396 - 85,436,517)
sequence
gaattctaaactttactctatagaccatatatcaaagcatattgaaaagg
agaaatctagtagaaagaataagaaatgaagtctatgtagaagttaagct
tccttgcaagttgtcaaagggaagtagagcactactgaagtcagtggagt
ggggagaaggagcacgcgcagttctactttgagtgcagaacttgttcagg
cttgagaaactcgaactccacatcagtcaacgcatcactcccttcctgtc
aaacaaaaggagtggaaaatctgctggaccaacaataaattggtaaacta
ggatgatttgatattgtacaatgcgctataaactcttaacaattcagcaa
ctggtcctacaggtagcgatcaataatatatttagagatttgttacactt
gttatttcacatttcaaatgattaaatggataccataaaagttatttctt
gaagttataacatcgttaatgaggttcaaaatagaatattgagactttaa
gatgttttgaaatttatttgctaaattttacattttatcagaaatttgag
tacatattccgttcatatttctattcatatattcaattcatatttctttt
cgtttcagataaatggtcatcttattgaatcttaaagtgtattatgataa
attattgagcatatgcactaatggaataggccaatatcaggaacactttt
cctaatataatatgaaatgtcttccttctgtcacttttaagccaacattt
gctttatgtgcatattttagctattaatatgagtcatataaaatgaaatt
atatagtgtcaagcacttagtgataataattctgaggaaatgtattttaa
ttgttacacatttcttaaaacacattcctgaaaaacttagtagtaccttc
ccattcgtacagttttgagattcccagacatttgaattcaaatcaagttc
agtcagaagcctcagatttgcttttgtaaacaaggccaggtttttctcct
taaatgttattgaaaatcaaaaagagaatatttcctgttgtttgatcatt
catatgtacctccatgttttatgatacatagctataatt
gaattcctgaagaaggccatcactgaggattttcttatgatggagctaga
gttttaaaggtctgttggggttggatagaatattcatctctgcctgagac
acaactgaatattaagagtacagcctcgaataagtttgtgaattctgata
tcgggagtcacgaggaaatctgtcaacactttcttgctggtaagtacaaa
attagagtacataatttctaaatccccttttcagaattctttaactaata
tgtcatgaatttactcattgaatgaaatatgaagtaggggttagggacag
agagagtacaaataacccgaaaaagcctttacaagtttttgacaatgaaa
aatatttccaaatgtgtagaaatccagagaaattctttgatatcaaactg
atatgttgaaaaatataattcatccctttgcaactgggatataaacattc
tgtgacattatatacaggtgccactgttatatactacagagccttatgca
tgtgaatacgactgatctgtggacctcagattaagaaaaagaagaagaaa
gaaagaaagagatgggtggcagctctgggattttagtatggcagtcacag
agctggtgttaagatccttgtctttcaccttatgtattatagctctatgc
tgagagctttaacacctcacctcaggcaagtcccaagtgcctgtgaattg
acaccataaacacacctccaaatttaacaaaggaataaaaaagaaaggga
ttaaaatgagggaaatgctctgaggacctctttttttgcattaagattaa
aacttgaggaaaagtttgaggagccactttgaaatgtcattaaggggaaa
aaaaagaaacacgggtttatctgacgacccagtctccaaagcacagcctc
gtgggtggtgtcggataaagcgctatcatcttttaccttgatgaactcgg
cactgacaggtcttttatgacaaatttggtgctctagtagcactttaaat
ctgtttgagatttggcgctgcatatcgggtaggttctgggccctggtgca
tggtgtgggtgggtctctcaggctcatctggggtcactaatggcggatcc
agaatgagggcaactgaaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85271001_85272098
seq2: B6Ng01-083G17.b_42_1130

seq1  GAATTCTAAACTTTACTCTATAGACCATATATCAAAGCATATTGAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACTTTACTCTATAGACCATATATCAAAGCATATTGAAAAGG  50

seq1  AGAAATCTAGTAGAAAGAATAAGAAATGAAGTCTATGTAGAAGTTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTAGTAGAAAGAATAAGAAATGAAGTCTATGTAGAAGTTAAGCT  100

seq1  TCCTTGCAAGTTGTCAAAGGGAAGTAGAGCACTACTGAAGTCAGTGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAGTTGTCAAAGGGAAGTAGAGCACTACTGAAGTCAGTGGAGT  150

seq1  GGGGAGAAGGAGCACGCGCAGTTCTACTTTGAGTGCAGAACTTGTTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGGAGCACGCGCAGTTCTACTTTGAGTGCAGAACTTGTTCAGG  200

seq1  CTTGAGAAACTCGAACTCCACATCAGTCAACGCATCACTCCCTTCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACTCGAACTCCACATCAGTCAACGCATCACTCCCTTCCTGTC  250

seq1  AAACAAAAGGAGTGGAAAATCTGCTGGACCAACAATAAATTGGTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGGAGTGGAAAATCTGCTGGACCAACAATAAATTGGTAAACTA  300

seq1  GGATGATTTGATATTGTACAATGCGCTATAAACTCTTAACAATTCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTGATATTGTACAATGCGCTATAAACTCTTAACAATTCAGCAA  350

seq1  CTGGTCCTACAGGTAGCGATCAATAATATATTTAGAGATTTGTTACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTACAGGTAGCGATCAATAATATATTTAGAGATTTGTTACACTT  400

seq1  GTTATTTCACATTTCAAATGATTAAATGGATACCATAAAAGTTATTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCACATTTCAAATGATTAAATGGATACCATAAAAGTTATTTCTT  450

seq1  GAAGTTATAACATCGTTAATGAGGTTCAAAATAGAATATTGAGACTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATAACATCGTTAATGAGGTTCAAAATAGAATATTGAGACTTTAA  500

seq1  GATGTTTTGAAATTTATTTGCTAAATTTTACATTTTATCAGAAATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGAAATTTATTTGCTAAATTTTACATTTTATCAGAAATTTGAG  550

seq1  TACATATTCCGTTCATATTTCTATTCATATATTCAATTCATATTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTCCGTTCATATTTCTATTCATATATTCAATTCATATTTCTTTT  600

seq1  CGTTTCAGATAAATGGTCATCTTATTGAATCTTAAAGTGTATTATGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCAGATAAATGGTCATCTTATTGAATCTTAAAGTGTATTATGATAA  650

seq1  ATTATTGAGCATATGCACTAATGGAATAGGCCAATATCAGGAACACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAGCATATGCACTAATGGAATAGGCCAATATCAGGAACACTTTT  700

seq1  CCTAATATAATATGAAATGTCTTCCTTCTGTCACTTTTAAGCCAACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATAATATGAAATGTCTTCCTTCTGTCACTTTTAAGCCAACATTT  750

seq1  GCTTTATGTGCATATTTTAGCTATTAATATGAGTCATATAAAATGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGTGCATATTTTAGCTATTAATATGAGTCATATAAAATGAAATT  800

seq1  ATATAGTGTCAAGCACTTAGTGATAATAATTCTGAGGAAATGTATTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGTCAAGCACTTAGTGATAATAATTCTGAGGAAATGTATTTTAA  850

seq1  TTGTTACACATTTCTTAAAACACATTCCTGAAAAACTTAGTAGTACCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACACATTTCTTAAAACACATTCCTGAAAAACTTAGTAGTACCTTC  900

seq1  CCATTCGTACAGTTTTGAGATTCCCAGACATTTGAATTCAAATCAAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGTACAGTTTTGAGATTCCCAGACATTTGAATTCAAATCAAGTTC  950

seq1  AGTCAGAAGCCTCAGATTTGCTCTGTAAAACAAGGCCAGGTTTTTCTCTT  1000
      |||||||||||||||||||||| |   ||||||||||||||||||||| |
seq2  AGTCAGAAGCCTCAGATTTGCTTTTGTAAACAAGGCCAGGTTTTTCTCCT  1000

seq1  TAAATGTTATTTGAAAAATCAAAAAAGAGAATTATTTCCATGTTGTTTTG  1050
      |||||||||||   |||||| |||||||||| ||||||| ||||||||  
seq2  TAAATGTTATT--GAAAATC-AAAAAGAGAA-TATTTCC-TGTTGTTT--  1043

seq1  AATCAATTCATATGTAACCTCCATGTTTTATGATACATAAGCTA-AATT  1098
       ||| |||||||||| |||||||||||||||||||||| ||||| ||||
seq2  GATC-ATTCATATGT-ACCTCCATGTTTTATGATACAT-AGCTATAATT  1089

seq1: chr14_85435396_85436517
seq2: B6Ng01-083G17.g_67_1188 (reverse)

seq1  GGATGTCAGTTG-CCTCTATCTTGGGAT-CGCCATTTAGTGA-CCCAGAT  47
      |||| ||||||| ||||  |||  |||| ||||| ||||||| |||||||
seq2  GGATTTCAGTTGCCCTCATTCT--GGATCCGCCA-TTAGTGACCCCAGAT  47

seq1  GAGGCCTGAGAGAACTCACCACA-CATGCA-CAGGG-CCAGATACTACCC  94
      || |||||||||| |   ||||| |||||| ||||| |||||  ||||||
seq2  GA-GCCTGAGAGACCCACCCACACCATGCACCAGGGCCCAGAACCTACCC  96

seq1  GATATGCAGCGCCAAATCTCATACAGATTTAAAGTTGCTACTAGAGCACA  144
      ||||||||||||||||||||| |||||||||||| |||||||||||||| 
seq2  GATATGCAGCGCCAAATCTCAAACAGATTTAAAG-TGCTACTAGAGCACC  145

seq1  AAATTTGTCATAAAAGACCTGTCAGTGCCGAGTTCATCAAGGTAAAAGAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTCATAAAAGACCTGTCAGTGCCGAGTTCATCAAGGTAAAAGAT  195

seq1  GATAGCGCTTTATCCTGACACCA-CCACGAGGCTGTGCTTTGGAGACTGG  243
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GATAGCGCTTTATCC-GACACCACCCACGAGGCTGTGCTTTGGAGACTGG  244

seq1  GTCGTCAGATAAAACCCGTGTTTCTTTTTTTTCCCCTTAATGACATTTCA  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCAGAT-AAACCCGTGTTTCTTTTTTTTCCCCTTAATGACATTTCA  293

seq1  AAGTGGCTCCTCAAACTTTTCCTCAAGTTTTAATCTTAATGCAAAAAAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTCCTCAAACTTTTCCTCAAGTTTTAATCTTAATGCAAAAAAAG  343

seq1  AGGTCCTCAGAGCATTTCCCTCATTTTAATCCCTTTCTTTTTTATTCCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCAGAGCATTTCCCTCATTTTAATCCCTTTCTTTTTTATTCCTT  393

seq1  TGTTAAATTTGGAGGTGTGTTTATGGTGTCAATTCACAGGCACTTGGGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATTTGGAGGTGTGTTTATGGTGTCAATTCACAGGCACTTGGGAC  443

seq1  TTGCCTGAGGTGAGGTGTTAAAGCTCTCAGCATAGAGCTATAATACATAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAGGTGAGGTGTTAAAGCTCTCAGCATAGAGCTATAATACATAA  493

seq1  GGTGAAAGACAAGGATCTTAACACCAGCTCTGTGACTGCCATACTAAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGACAAGGATCTTAACACCAGCTCTGTGACTGCCATACTAAAAT  543

seq1  CCCAGAGCTGCCACCCATCTCTTTCTTTCTTTCTTCTTCTTTTTCTTAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTGCCACCCATCTCTTTCTTTCTTTCTTCTTCTTTTTCTTAAT  593

seq1  CTGAGGTCCACAGATCAGTCGTATTCACATGCATAAGGCTCTGTAGTATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCACAGATCAGTCGTATTCACATGCATAAGGCTCTGTAGTATA  643

seq1  TAACAGTGGCACCTGTATATAATGTCACAGAATGTTTATATCCCAGTTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGGCACCTGTATATAATGTCACAGAATGTTTATATCCCAGTTGC  693

seq1  AAAGGGATGAATTATATTTTTCAACATATCAGTTTGATATCAAAGAATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATGAATTATATTTTTCAACATATCAGTTTGATATCAAAGAATTT  743

seq1  CTCTGGATTTCTACACATTTGGAAATATTTTTCATTGTCAAAAACTTGTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATTTCTACACATTTGGAAATATTTTTCATTGTCAAAAACTTGTA  793

seq1  AAGGCTTTTTCGGGTTATTTGTACTCTCTCTGTCCCTAACCCCTACTTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTTTCGGGTTATTTGTACTCTCTCTGTCCCTAACCCCTACTTCA  843

seq1  TATTTCATTCAATGAGTAAATTCATGACATATTAGTTAAAGAATTCTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTCAATGAGTAAATTCATGACATATTAGTTAAAGAATTCTGAA  893

seq1  AAGGGGATTTAGAAATTATGTACTCTAATTTTGTACTTACCAGCAAGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGATTTAGAAATTATGTACTCTAATTTTGTACTTACCAGCAAGAAA  943

seq1  GTGTTGACAGATTTCCTCGTGACTCCCGATATCAGAATTCACAAACTTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACAGATTTCCTCGTGACTCCCGATATCAGAATTCACAAACTTAT  993

seq1  TCGAGGCTGTACTCTTAATATTCAGTTGTGTCTCAGGCAGAGATGAATAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCTGTACTCTTAATATTCAGTTGTGTCTCAGGCAGAGATGAATAT  1043

seq1  TCTATCCAACCCCAACAGACCTTTAAAACTCTAGCTCCATCATAAGAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCAACCCCAACAGACCTTTAAAACTCTAGCTCCATCATAAGAAAA  1093

seq1  TCCTCAGTGATGGCCTTCTTCAGGAATTC  1122
      |||||||||||||||||||||||||||||
seq2  TCCTCAGTGATGGCCTTCTTCAGGAATTC  1122