BAC Information

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BAC

Clone NameB6Ng01-084A09
Chromosome2 (Build37)14 (Build37)
Map Location 82,610,313 - 82,611,44898,726,290 - 98,727,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084A09.bB6Ng01-084A09.g
ACCDH898112DH898113
length1,123219
definitionDH898112|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A09, 5' end.DH898113|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,610,313 - 82,611,448)(98,726,290 - 98,727,063)
sequence
gaattctcccaagcacagatttccgctctactactaaatactttgggggt
cataatgcatgaacagaaaagagtatgcatgggttatgcatgattagagg
tcattgaagatagacctctctctggaggaaggatttggtccccactctgt
gttttcctagtaatactagaaaagtaaataccaccatcatttctcttcag
aatataaacaatcacccagaaagctgaagataaataggattttgctgaag
tccgttatgggaaagtttcttcttacaggtcaagagaacggaatctgtgt
tataattctgactctgggtagagacaagtcactttttatcttccacaaag
attaaaatattacaagctattggctcattgtctcttaagagaatcatcag
ggcctgttaatcatctggctttgaaacagaaagtcttattcagttgaaga
caagatatgctatgggaggactgttaatcctctaataagatatttgatta
tccttcctagaatcctctcccttggtgcagtatcttccagagatgccctc
atactgcactgataaggctgccaacttttctaactcagaaatgcgtaact
ttccctttggtttcttcctcttggatactggccaaaagcctaaacatgtt
ttttcccaacactgtgctttcttattctttgtctaaagtccccaacccct
cttaccaggtatctgcttcaggatttctgccattgagtaagctagctttc
ttagatgctgactcaaaaggggtatcttgttttccttttctgtttcatat
ctttctttcttgcagctgctgaaaatttcagcctgtacaccctgcagttt
ttctctaaaacttgaataaattggcctttcaacttccgtttttttagtct
attaaaaattcttttattaacaaatacgagaattcaaagggaacttcaat
tttctctgtagtatagactgtggtgtgtggtacacatttgtattatttcc
agtctgtgaattgtttgtacaaaacacactggcataaattatggatacat
tttataaggcgatgctagacacctcaggacaagctcccagcacagctgaa
ttgatgcaagaaactctaatcat
ctagcatagaaataggagtgtctctgactcttttgcttgtccttgggtcc
cttttccttctaatgggtcaccttatccaactttggtatgagggtttgtg
cccagtcttatcttttcttgttatgccatgtctgtttgaggccaactctt
tcctggagggaaagaacagggagaattcccttatacagtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82610313_82611448
seq2: B6Ng01-084A09.b_46_1168 (reverse)

seq1  ATGATTAGGAAGTATCTTGCATCATATCCAGCTTGTGCTGTGAGCTTTGT  50
      ||||||||  ||| |||||||||| || |||| ||||||| |||| ||||
seq2  ATGATTAG--AGTTTCTTGCATCA-ATTCAGC-TGTGCTGGGAGC-TTGT  45

seq1  CCCTGAGTTGTCTAGCATCGCCTTTAATAAAATGTATCCAATAATTTTAT  100
       |||||| ||||||||||||||||  ||||||||||||| |||| |||||
seq2  -CCTGAGGTGTCTAGCATCGCCTT--ATAAAATGTATCC-ATAA-TTTAT  90

seq1  GCCAGTGTGTTTTGTTACCAAACAATTCACAGACTGGAAATAATACAAAT  150
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GCCAGTGTGTTTTGT--ACAAACAATTCACAGACTGGAAATAATACAAAT  138

seq1  GTGTACCACACACCACAGTCTATACTACAGAGAAAATTGAAGTTCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTACCACACACCACAGTCTATACTACAGAGAAAATTGAAGTTCCC-TT  187

seq1  TGAATTCTCGTATTTGTTAATAAAAGAATTTTTAATAGACTAAAAAAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCGTATTTGTTAATAAAAGAATTTTTAATAGACTAAAAAAACG  237

seq1  GAAGTTGAAAGGCCAATTTATTCAAGTTTTAGAGAAAAACTGCAGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAAGGCCAATTTATTCAAGTTTTAGAGAAAAACTGCAGGGTGT  287

seq1  ACAGGCTGAAATTTTCAGCAGCTGCAAGAAAGAAAGATATGAAACAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGAAATTTTCAGCAGCTGCAAGAAAGAAAGATATGAAACAGAAA  337

seq1  AGGAAAACAAGATACCCCTTTTGAGTCAGCATCTAAGAAAGCTAGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAAGATACCCCTTTTGAGTCAGCATCTAAGAAAGCTAGCTTAC  387

seq1  TCAATGGCAGAAATCCTGAAGCAGATACCTGGTAAGAGGGGTTGGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCAGAAATCCTGAAGCAGATACCTGGTAAGAGGGGTTGGGGACT  437

seq1  TTAGACAAAGAATAAGAAAGCACAGTGTTGGGAAAAAACATGTTTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAAGAATAAGAAAGCACAGTGTTGGGAAAAAACATGTTTAGGCT  487

seq1  TTTGGCCAGTATCCAAGAGGAAGAAACCAAAGGGAAAGTTACGCATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCAGTATCCAAGAGGAAGAAACCAAAGGGAAAGTTACGCATTTCT  537

seq1  GAGTTAGAAAAGTTGGCAGCCTTATCAGTGCAGTATGAGGGCATCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAAAAGTTGGCAGCCTTATCAGTGCAGTATGAGGGCATCTCTGG  587

seq1  AAGATACTGCACCAAGGGAGAGGATTCTAGGAAGGATAATCAAATATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTGCACCAAGGGAGAGGATTCTAGGAAGGATAATCAAATATCTT  637

seq1  ATTAGAGGATTAACAGTCCTCCCATAGCATATCTTGTCTTCAACTGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGATTAACAGTCCTCCCATAGCATATCTTGTCTTCAACTGAATA  687

seq1  AGACTTTCTGTTTCAAAGCCAGATGATTAACAGGCCCTGATGATTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTGTTTCAAAGCCAGATGATTAACAGGCCCTGATGATTCTCTT  737

seq1  AAGAGACAATGAGCCAATAGCTTGTAATATTTTAATCTTTGTGGAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAATGAGCCAATAGCTTGTAATATTTTAATCTTTGTGGAAGATA  787

seq1  AAAAGTGACTTGTCTCTACCCAGAGTCAGAATTATAACACAGATTCCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACTTGTCTCTACCCAGAGTCAGAATTATAACACAGATTCCGTT  837

seq1  CTCTTGACCTGTAAGAAGAAACTTTCCCATAACGGACTTCAGCAAAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACCTGTAAGAAGAAACTTTCCCATAACGGACTTCAGCAAAATCC  887

seq1  TATTTATCTTCAGCTTTCTGGGTGATTGTTTATATTCTGAAGAGAAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTTCAGCTTTCTGGGTGATTGTTTATATTCTGAAGAGAAATGA  937

seq1  TGGTGGTATTTACTTTTCTAGTATTACTAGGAAAACACAGAGTGGGGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTATTTACTTTTCTAGTATTACTAGGAAAACACAGAGTGGGGACC  987

seq1  AAATCCTTCCTCCAGAGAGAGGTCTATCTTCAATGACCTCTAATCATGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCCTCCAGAGAGAGGTCTATCTTCAATGACCTCTAATCATGCA  1037

seq1  TAACCCATGCATACTCTTTTCTGTTCATGCATTATGACCCCCAAAGTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATGCATACTCTTTTCTGTTCATGCATTATGACCCCCAAAGTATT  1087

seq1  TAGTAGTAGAGCGGAAATCTGTGCTTGGGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAGAGCGGAAATCTGTGCTTGGGAGAATTC  1123

seq1: chr14_98726290_98727063
seq2: B6Ng01-084A09.g_235_292 (reverse)

seq1  ACACACACACACAAACACACACACACACACACTGTATGTGATGGAGGGTT  50
      ||||||||||||| |||||||||||||||||||||||   | || |  ||
seq2  ACACACACACACACACACACACACACACACACTGTAT---AAGG-GAATT  46

seq1  AACATTGAACATTATCATTAAATGAGTCCATATTTAAGCTGCAAAGATTG  100
        |  ||  | |                                      
seq2  CTCCCTGTTCTT--------------------------------------  58

seq1  ATAATAATCAACTTTTACTATTATTTGGGGCACAATATGAGCAACTACAT  150
                                                        
seq2  --------------------------------------------------  58

seq1  AGATAATACATGGTTGAAAAAAGAAATCTAACAGCGACTGGCTGAGGTGG  200
                                                        
seq2  --------------------------------------------------  58

seq1  AGGAACCCAAGAAGACGGTCTGTCCAGAACTTTCACGGTGGATCTGTACA  250
                                                        
seq2  --------------------------------------------------  58

seq1  GTATTCTTTTCTTCTGAGTGTGAGTGAAGATGCTTCCTGGAATGGGAACT  300
                                                        
seq2  --------------------------------------------------  58

seq1  CTTAGAACCTTTCATGAAGCAAGGTATGCCAGGGAGATCCATCACAGTTT  350
                                                        
seq2  --------------------------------------------------  58

seq1  ACTCAAAAAAGCAGAGGAGATTATGTCAGTTTTCGTGGTTTTATTTTTCA  400
                                                        
seq2  --------------------------------------------------  58

seq1  CGCACACACACACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450
                                                        
seq2  --------------------------------------------------  58

seq1  TGTGTGTGTGTGTGTGTGTTCACGTGCGCATAAAGGAGTCAGTGAGTTCC  500
                                                        
seq2  --------------------------------------------------  58

seq1  CCTTCCACCATGTGGGTTCCAGGGGTTGAATACAAGTAATCAGGCCAAGT  550
                                                        
seq2  --------------------------------------------------  58

seq1  GGCAAGCATTTTTTAAACTTCTCGCTGCTCCAGTATTTTTAGCTTTATGG  600
                                                        
seq2  --------------------------------------------------  58

seq1  TTGGCTTTGGTGTGAAAAAGTGCTTATGCAGTGATTTGGGGAAGAGAGGT  650
                                                        
seq2  --------------------------------------------------  58

seq1  TGATGTTTCTATAACTTAATTTATAGGAGAATTAGGAATGAGAGATTGAA  700
                                                        
seq2  --------------------------------------------------  58

seq1  GAGATGGAGTTGCCCTAAAGAAACTTTGTCCCTGAAGGTGTTTCAAAGAC  750
                                                        
seq2  --------------------------------------------------  58

seq1  CTTCACATCATTTTCCCTGTTCTT  774
                              
seq2  ------------------------  58