BAC Information

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BAC

Clone NameB6Ng01-084E05
Chromosome3 (Build37)14 (Build37)
Map Location 72,748,599 - 72,749,71125,475,670 - 25,475,782
singlet/doubletsingletsinglet
Overlap gene2010204N08Rik
Upstream geneLOC100041459
Downstream geneSlitrk3, Bche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E05.bB6Ng01-084E05.g
ACCDH898273DH898274
length1,107514
definitionDH898273|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E05, 5' end.DH898274|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,748,599 - 72,749,711)(25,475,670 - 25,475,782)
sequence
gaattctgcggacctacctgtctatacctcccagggctgggatgacaagt
ggtcaccaccatgtgtggctttcgtgtgggtgctggagaactgaactcaa
gtctttatacttgtgtgcctcagctttccttactgagccatctcaccagc
tcctaagcattatcacatttaaatcaattagtgtgctagaaatgatgaaa
attagtatttagacaaatgctgcacagcatcaatgtgtaaattgcaatgt
acctatcaatgactatcccccatagaattatgtattattaaaacaatgaa
gtatcatttaattaaatacaacacattacatgtaatacaattaatgtgta
atgggtttatacttattgtagctaaaaaatcttgtccagtctcaaaagaa
atgaaatgcaggaaccttatcaaatattaactaaatgtggtcttttgtgg
gttttgttttgttttgttttgattaggtatatagaacacactataaaaac
agaaataaatattgtgataaaatatcttacgaaaatattgtgatattatt
ttctctaaggtattcttgacaaaatcatgtactccaaaacgctttgcatg
gatgctgtgcagcactgggggaatcagtatgatgtacacagcctgtatgg
atacagcatggctatagccacagagaagtaagtcaaattgtgtatttagc
aaagatttgcttattccggaggactttctttggaaattttgttttcctgt
tttctatggaaaagtacaatatagttgcttttatcaatcatgacattccc
aactggcttaaaacggtgatgcagtgactgctctttatccttcgaaaata
agtgtttcaactaaaatttagtttctaattagtagagcacaatagaataa
ggaacatggcataaaacagaaacaggtatatagcacatattgagtttcag
ttcttttgctagtgttctgtagtttctagagagcagcaactgacaataca
cagaccttctcagtatttttttttatcattttctttatcatgttttttaa
atctttgaatgtgctttcttaggtttaagggaacactaataccatatatg
ataattt
catttggcaaataataagcaatgcactaaacacaagggacaaagaaaaag
ataaatcttgcaaggataaaaatttcaagaccaattagaaaaacaacaga
tatgagcaagaccttgatagctggaaggaactggaaagatattttacaaa
tagtagcagactgtatttgccagccctgagtattctacccagtgaaattc
gcaaaaactatagatggagaaaaaaatatatcccattatagaaccaaaat
taagctgttactaactaaaaatccagccttacagacagaaaaatgtaacc
tgaagaagttagcaacactcaaggaaacagtagaaataagaaataagtaa
cagcataccagaaaatccaaagagaggaacatacatacatacatacatac
atacatacatacatacaaaacacacatacaaacagtctcctctctctctc
tctctctctctctctctctctctctctcacactcacacacacacacacac
acacacacactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72748599_72749711
seq2: B6Ng01-084E05.b_43_1149 (reverse)

seq1  AAATTATCATATATGGTTATTAGTGTTCCTTTAAACATAAAGAAAGCACA  50
      |||||||||||||||| |||||||||||| |||||| | |||||||||||
seq2  AAATTATCATATATGG-TATTAGTGTTCCCTTAAACCT-AAGAAAGCACA  48

seq1  TCAAAAGATTTAAAAAAACAATGAATAAAGAAAATGATAAAAAAAAATAC  100
      |  ||||||||||||||   ||| ||||||||||||||||||||||||||
seq2  TTCAAAGATTTAAAAAA--CATG-ATAAAGAAAATGATAAAAAAAAATAC  95

seq1  TGAGAAGGTCTGTGTATTGTCAGTTGCTGCTCTCTAGAAACTTACAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGAAGGTCTGTGTATTGTCAGTTGCTGCTCTCTAGAAAC-TACAGAAC  144

seq1  ACTAGCAAAAGAACTGAAACTCAATATGTGCTATATACCTGTTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAAAGAACTGAAACTCAATATGTGCTATATACCTGTTTCTGTTT  194

seq1  TATGCCATGTTCCTTATTCTATTGTGCTCTACTAATTAGAAACTAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATGTTCCTTATTCTATTGTGCTCTACTAATTAGAAACTAAATTT  244

seq1  TAGTTGAAACACTTATTTTCGAAGGATAAAGAGCAGTCACTGCATCACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAAACACTTATTTTCGAAGGATAAAGAGCAGTCACTGCATCACCG  294

seq1  TTTTAAGCCAGTTGGGAATGTCATGATTGATAAAAGCAACTATATTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCCAGTTGGGAATGTCATGATTGATAAAAGCAACTATATTGTAC  344

seq1  TTTTCCATAGAAAACAGGAAAACAAAATTTCCAAAGAAAGTCCTCCGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATAGAAAACAGGAAAACAAAATTTCCAAAGAAAGTCCTCCGGAA  394

seq1  TAAGCAAATCTTTGCTAAATACACAATTTGACTTACTTCTCTGTGGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATCTTTGCTAAATACACAATTTGACTTACTTCTCTGTGGCTAT  444

seq1  AGCCATGCTGTATCCATACAGGCTGTGTACATCATACTGATTCCCCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCTGTATCCATACAGGCTGTGTACATCATACTGATTCCCCCAGT  494

seq1  GCTGCACAGCATCCATGCAAAGCGTTTTGGAGTACATGATTTTGTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGCATCCATGCAAAGCGTTTTGGAGTACATGATTTTGTCAAGA  544

seq1  ATACCTTAGAGAAAATAATATCACAATATTTTCGTAAGATATTTTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAGAGAAAATAATATCACAATATTTTCGTAAGATATTTTATCAC  594

seq1  AATATTTATTTCTGTTTTTATAGTGTGTTCTATATACCTAATCAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTTCTGTTTTTATAGTGTGTTCTATATACCTAATCAAAACAA  644

seq1  AACAAAACAAAACCCACAAAAGACCACATTTAGTTAATATTTGATAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACCCACAAAAGACCACATTTAGTTAATATTTGATAAGGT  694

seq1  TCCTGCATTTCATTTCTTTTGAGACTGGACAAGATTTTTTAGCTACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTTCATTTCTTTTGAGACTGGACAAGATTTTTTAGCTACAATA  744

seq1  AGTATAAACCCATTACACATTAATTGTATTACATGTAATGTGTTGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAACCCATTACACATTAATTGTATTACATGTAATGTGTTGTATTT  794

seq1  AATTAAATGATACTTCATTGTTTTAATAATACATAATTCTATGGGGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGATACTTCATTGTTTTAATAATACATAATTCTATGGGGGATA  844

seq1  GTCATTGATAGGTACATTGCAATTTACACATTGATGCTGTGCAGCATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGATAGGTACATTGCAATTTACACATTGATGCTGTGCAGCATTTG  894

seq1  TCTAAATACTAATTTTCATCATTTCTAGCACACTAATTGATTTAAATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACTAATTTTCATCATTTCTAGCACACTAATTGATTTAAATGTG  944

seq1  ATAATGCTTAGGAGCTGGTGAGATGGCTCAGTAAGGAAAGCTGAGGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTAGGAGCTGGTGAGATGGCTCAGTAAGGAAAGCTGAGGCACA  994

seq1  CAAGTATAAAGACTTGAGTTCAGTTCTCCAGCACCCACACGAAAGCCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAAAGACTTGAGTTCAGTTCTCCAGCACCCACACGAAAGCCACA  1044

seq1  CATGGTGGTGACCACTTGTCATCCCAGCCCTGGGAGGTATAGACAGGTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGTGACCACTTGTCATCCCAGCCCTGGGAGGTATAGACAGGTAG  1094

seq1  GTCCGCAGAATTC  1113
      |||||||||||||
seq2  GTCCGCAGAATTC  1107

seq1: chr14_25475670_25475782
seq2: B6Ng01-084E05.g_482_589 (reverse)

seq1  GAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTGTGAGTGTGTGGTG  100
      |||||||||||||||||||||||||   |||| ||| ||  |||||| | 
seq2  GAGAGAGAGAGAGAGAGAGAGAGAG---GAGACTGTTTGTATGTGTGTTT  97

seq1  TGTATATGTATGT  113
      ||  |||||||||
seq2  TG--TATGTATGT  108