BAC Information

Click to search

BAC

Clone NameB6Ng01-084N17
Chromosome14 (Build37)
Map Location 21,894,874 - 22,045,848
singlet/doubletdoublet
Overlap geneAdk
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084N17.bB6Ng01-084N17.g
ACCDH898688DH898689
length1,1251,145
definitionDH898688|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N17, 5' end.DH898689|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,894,874 - 21,896,018)(22,044,699 - 22,045,848)
sequence
gaattcagcgctcctttgcagctgttgccttgcttttagttttccacggc
ctgaggtttcccaggtggctgcttttcgtctgcagatgaggttttgcgga
ctgttaaaccacgtccaagatttgtcctgacagcgtccctttccccagac
tgttaaagggacctgagctcgccgaggtagagcgtgcccatgtgactgcg
aaccgggttgccagcggcgcggccatttttgaggcgggcactcaacctta
ttgccctggggggccgggagggcaaggggaggtggttaccaggactcaag
atggccaccgtgcccgctagccagccctctggctggtcagctagcccgcg
tggcagcgagcctgaccgagccccagcgagccccgcgggcagcgagcctc
ggcgctcagccctgggggcggcgctacagcggaccgacgggggcggggcg
tccgccctcctttggccgcagccaatcagcgggtggggccagctcgcccc
gggccgcccgcgcgcggggtgtgtaaggacgagctctccgacgctgagtg
ccagagctagggagcagttgctgtggtacctactgctacctgggcagacg
ctgagcatcggacatcaggcgcggggcgctgcggtgcgggacgggtaggt
gcagtcatgacgtccaccaggtaagcagagggcggccgcttcagctatgc
cccggctgggcgtgagcttgcagattctgagagaactattgccccttccc
taggtctagagcctccctttgccgctggctcctcttctgttcccctcaca
cttctcactggttcatttcttgtttcttccgaagtttttgcattagtagc
agacgcgctgccctatttgttgtcacttacatgaggtgacccttgctcag
attccagggtctgtggcttacttgtgtgtgtgtaatgaattctcatgaaa
actgcctcccgcccccatcgacccactgtgggtgacccaggcccaaggaa
tgtgccctgttcagtgtatgcccattctctgtgtcatgcttctgacgaac
ttcatggtagccatgacagatctttaagtgcacctctccagcgattgttc
cagtgtgaatgggtgttcctaaaat
gaattcatgttattagctttgcatggtgaacactgttagcgactcagtta
cttcttacccagacacttggcatttaactttgggttcagagactgcatgc
tattactacagggaacagctattgatgggggagcactgacagagggaaca
gagactgactacagaaacaccaggaaggaccatgtcttctgttcaaacaa
aacaaacaaggccacaggattgcaaaaactatcaaggaaaataatttttt
ttactgaaagaaatttaatctcatttaaaaacactgtgtaaataatatat
tttcaatatgtgcatacttgtgtgtctgtctgaggttatgtgagagagtg
caggttgctcttgaggtccagtgagggcatctgatcacctggagcaggag
tcacaagtgcttatgagcagctccatctgtgtgctgggaactctgaatga
gcagcactcttaaccaataagcccctaaattatgattgtcaacaatagct
tatatcatctggaattttcactgaattaataaaagatgaatgaacagaaa
taggcagccaggatttatcttcaaaatataatgatgaaaaaagaaaaaca
aaaaccaaaacaacccaatccaaaccaataacaacaaaagtacattgtat
ggtatggctgtgtgggaaaactgtgctaaagtcccagtctaccatgtcca
gatagatcctctaatcttggcacaaaatggaagacgccctttcccagcag
ggcttcctcttttctgaccctgcctggagagcctgaacccctcacaccct
ctacctgggaacatcaggtagccttggtgagattacagcttcaactttct
ttctccaaaaaacctgttcagcaagcacctagaattcctggcaagcctct
ccaggcaaaggaggcattcttaggtacccttgctatagacaatgctacat
acccaccctggaaatccctacccctttcccaaaagtgatatagcctccct
tgatccaccccacagctgagctgctctgaagctcatgcgggtttcttgtc
atttcttgttagactcggccacggaccatgtcctccaactaatattccct
ttgttcttgtgggctggtagcaatagcctctggggcgggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21894874_21896018
seq2: B6Ng01-084N17.b_45_1169

seq1  GAATTCAGCGCTCCTTTGCAGCTGTTGCCTTGCTTTTAGTTTTCCACGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGCTCCTTTGCAGCTGTTGCCTTGCTTTTAGTTTTCCACGGC  50

seq1  CTGAGGTTTCCCAGGTGGCTGCTTTTCGTCTGCAGATGAGGTTTTGCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTTCCCAGGTGGCTGCTTTTCGTCTGCAGATGAGGTTTTGCGGA  100

seq1  CTGTTAAACCACGTCCAAGATTTGTCCTGACAGCGTCCCTTTCCCCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAACCACGTCCAAGATTTGTCCTGACAGCGTCCCTTTCCCCAGAC  150

seq1  TGTTAAAGGGACCTGAGCTCGCCGAGGTAGAGCGTGCCCATGTGACTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGGGACCTGAGCTCGCCGAGGTAGAGCGTGCCCATGTGACTGCG  200

seq1  AACCGGGTTGCCAGCGGCGCGGCCATTTTTGAGGCGGGCACTCAACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGGTTGCCAGCGGCGCGGCCATTTTTGAGGCGGGCACTCAACCTTA  250

seq1  TTGCCCTGGGGGGCCGGGAGGGCAAGGGGAGGTGGTTACCAGGACTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGGGGGCCGGGAGGGCAAGGGGAGGTGGTTACCAGGACTCAAG  300

seq1  ATGGCCACCGTGCCCGCTAGCCAGCCCTCTGGCTGGTCAGCTAGCCCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCGTGCCCGCTAGCCAGCCCTCTGGCTGGTCAGCTAGCCCGCG  350

seq1  TGGCAGCGAGCCTGACCGAGCCCCAGCGAGCCCCGCGGGCAGCGAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGAGCCTGACCGAGCCCCAGCGAGCCCCGCGGGCAGCGAGCCTC  400

seq1  GGCGCTCAGCCCTGGGGGCGGCGCTACAGCGGACCGACGGGGGCGGGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCAGCCCTGGGGGCGGCGCTACAGCGGACCGACGGGGGCGGGGCG  450

seq1  TCCGCCCTCCTTTGGCCGCAGCCAATCAGCGGGTGGGGCCAGCTCGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCTCCTTTGGCCGCAGCCAATCAGCGGGTGGGGCCAGCTCGCCCC  500

seq1  GGGCCGCCCGCGCGCGGGGTGTGTAAGGACGAGCTCTCCGACGCTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGCCCGCGCGCGGGGTGTGTAAGGACGAGCTCTCCGACGCTGAGTG  550

seq1  CCAGAGCTAGGGAGCAGTTGCTGTGGTACCTACTGCTACCTGGGCAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTAGGGAGCAGTTGCTGTGGTACCTACTGCTACCTGGGCAGACG  600

seq1  CTGAGCATCGGACATCAGGCGCGGGGCGCTGCGGTGCGGGACGGGTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCGGACATCAGGCGCGGGGCGCTGCGGTGCGGGACGGGTAGGT  650

seq1  GCAGTCATGACGTCCACCAGGTAAGCAGAGGGCGGCCGCTTCAGCTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATGACGTCCACCAGGTAAGCAGAGGGCGGCCGCTTCAGCTATGC  700

seq1  CCCGGCTGGGCGTGAGCTTGCAGATTCTGAGAGAACTATTGCCCCTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTGGGCGTGAGCTTGCAGATTCTGAGAGAACTATTGCCCCTTCCC  750

seq1  TAGGTCTAGAGCCTCCCTTTGCCGCTGGCTCCTCTTCTGTTCCCCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTAGAGCCTCCCTTTGCCGCTGGCTCCTCTTCTGTTCCCCTCACA  800

seq1  CTTCTCACTGGTTCATTTCTTGTTTCTTCCGAAGTTTTTGCATTAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTGGTTCATTTCTTGTTTCTTCCGAAGTTTTTGCATTAGTAGC  850

seq1  AGAAGGCGCTGCCCTATTTGTTGTCACTTACATGAGGTGACCCTTGCTCA  900
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ACGCGCTGCCCTATTTGTTGTCACTTACATGAGGTGACCCTTGCTCA  899

seq1  GATTCCAGGGTCTGTGGCTTACTTGTGTGTGTGTAATGAATTTCTCATGA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  GATTCCAGGGTCTGTGGCTTACTTGTGTGTGTGTAATGAA-TTCTCATG-  947

seq1  AAAACTGCCTCCCGCCCCCATCGACCCACTGTGGGGTGACCCGGGCCCCA  1000
      |||||||||||||||||||||||||||||||| ||||||||| |||||  
seq2  AAAACTGCCTCCCGCCCCCATCGACCCACTGT-GGGTGACCCAGGCCC--  994

seq1  AGGGAATGTGCCCTGTACAGTGTATGCCCATTCCTCTGTGTCATGCCTTC  1050
      | |||||||||||||| ||||||||||||||| |||||||||||| ||||
seq2  AAGGAATGTGCCCTGTTCAGTGTATGCCCATT-CTCTGTGTCATG-CTTC  1042

seq1  TGACAGAACTTCATGGTTAGCCATGAGCAGATCTGTAGAGTTGGCACCTC  1100
      |||| ||||||||||| ||||||||| ||||||| || |||  |||||||
seq2  TGAC-GAACTTCATGG-TAGCCATGA-CAGATCTTTA-AGT--GCACCTC  1086

seq1  TCACGCAGATTGTTCCCAAGTTGTGAAATTGTGTGTCCCTAAAAT  1145
      ||  || |||||||||  || ||||||  || |||| ||||||||
seq2  TCCAGC-GATTGTTCC--AG-TGTGAA--TGGGTGTTCCTAAAAT  1125

seq1: chr14_22044699_22045848
seq2: B6Ng01-084N17.g_71_1215 (reverse)

seq1  CTCCCCACCGCCCCAGAGGCTATTGGCTACCAGCCCACAAGGACAAAGGG  50
      |||||| ||||||||||||||||| |||||||||||||||| ||||||||
seq2  CTCCCCCCCGCCCCAGAGGCTATT-GCTACCAGCCCACAAGAACAAAGGG  49

seq1  AATA-TAGTTGAGGAACATGGTTCCGGTGGCCCGAGTCTGAC-AGAAATG  98
      |||| ||||||  | |||||||  | |||| |||||||| || |||||||
seq2  AATATTAGTTGGAGGACATGGT--CCGTGG-CCGAGTCTAACAAGAAATG  96

seq1  AC-AGAAACCCGGCATGAGCTTCAGAGGCAGCTCAGCTGTGGGGTGGATC  147
      || |||||||| |||||||||||||| |||||||||||||||||||||||
seq2  ACAAGAAACCC-GCATGAGCTTCAGA-GCAGCTCAGCTGTGGGGTGGATC  144

seq1  AAGGGAGGGCTATATCACTTTTGGGAAAGGGGTAGGGATTTCCAGGGTGG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGA-GGCTATATCACTTTTGGGAAAGGGGTAGGGATTTCCAGGGTGG  193

seq1  GTATGTAGCATTGTCTATAGCAAGGGTACCTAAGAATGCCTCCTTTGCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGCATTGTCTATAGCAAGGGTACCTAAGAATGCCTCCTTTGCCT  243

seq1  GGAGAGGCTTGCCAGGAATTCTAGGTGCTTGCTGAACAGGTTTTTTTGGA  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGAGGCTTGCCAGGAATTCTAGGTGCTTGCTGAACAGG-TTTTTTGGA  292

seq1  GAAAGAAAGTTGAAGCTGTAATCTCACCAAGGCTACCTGATGTTCCCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGTTGAAGCTGTAATCTCACCAAGGCTACCTGATGTTCCCAGG  342

seq1  TAGAGGGTGTGAGGGGTTCAGGCTCTCCAGGCAGGGTCAGAAAAGAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTGTGAGGGGTTCAGGCTCTCCAGGCAGGGTCAGAAAAGAGGAA  392

seq1  GCCCTGCTGGGAAAGGGCGTCTTCCATTTTGTGCCAAGATTAGAGGATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGGGAAAGGGCGTCTTCCATTTTGTGCCAAGATTAGAGGATCT  442

seq1  ATCTGGACATGGTAGACTGGGACTTTAGCACAGTTTTCCCACACAGCCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACATGGTAGACTGGGACTTTAGCACAGTTTTCCCACACAGCCAT  492

seq1  ACCATACAATGTACTTTTGTTGTTATTGGTTTGGATTGGGTTGTTTTGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACAATGTACTTTTGTTGTTATTGGTTTGGATTGGGTTGTTTTGGT  542

seq1  TTTTGTTTTTCTTTTTTCATCATTATATTTTGAAGATAAATCCTGGCTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCTTTTTTCATCATTATATTTTGAAGATAAATCCTGGCTGC  592

seq1  CTATTTCTGTTCATTCATCTTTTATTAATTCAGTGAAAATTCCAGATGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGTTCATTCATCTTTTATTAATTCAGTGAAAATTCCAGATGAT  642

seq1  ATAAGCTATTGTTGACAATCATAATTTAGGGGCTTATTGGTTAAGAGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATTGTTGACAATCATAATTTAGGGGCTTATTGGTTAAGAGTGC  692

seq1  TGCTCATTCAGAGTTCCCAGCACACAGATGGAGCTGCTCATAAGCACTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCAGAGTTCCCAGCACACAGATGGAGCTGCTCATAAGCACTTG  742

seq1  TGACTCCTGCTCCAGGTGATCAGATGCCCTCACTGGACCTCAAGAGCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGCTCCAGGTGATCAGATGCCCTCACTGGACCTCAAGAGCAAC  792

seq1  CTGCACTCTCTCACATAACCTCAGACAGACACACAAGTATGCACATATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTCTCACATAACCTCAGACAGACACACAAGTATGCACATATTG  842

seq1  AAAATATATTATTTACACAGTGTTTTTAAATGAGATTAAATTTCTTTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTATTTACACAGTGTTTTTAAATGAGATTAAATTTCTTTCAG  892

seq1  TAAAAAAAATTATTTTCCTTGATAGTTTTTGCAATCCTGTGGCCTTGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATTATTTTCCTTGATAGTTTTTGCAATCCTGTGGCCTTGTTT  942

seq1  GTTTTGTTTGAACAGAAGACATGGTCCTTCCTGGTGTTTCTGTAGTCAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTGAACAGAAGACATGGTCCTTCCTGGTGTTTCTGTAGTCAGT  992

seq1  CTCTGTTCCCTCTGTCAGTGCTCCCCCATCAATAGCTGTTCCCTGTAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCCTCTGTCAGTGCTCCCCCATCAATAGCTGTTCCCTGTAGTA  1042

seq1  ATAGCATGCAGTCTCTGAACCCAAAGTTAAATGCCAAGTGTCTGGGTAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGCAGTCTCTGAACCCAAAGTTAAATGCCAAGTGTCTGGGTAAG  1092

seq1  AAGTAACTGAGTCGCTAACAGTGTTCACCATGCAAAGCTAATGACATGAA  1147
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTAACTGAGTCGCTAACAGTGTTCACCATGCAAAGCTAATAACATGAA  1142

seq1  TTC  1150
      |||
seq2  TTC  1145