BAC Information

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BAC

Clone NameB6Ng01-085C10
Chromosome14 (Build37)
Map Location 55,175,820 - 55,346,699
singlet/doubletdoublet
Overlap geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
Upstream geneEG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e
Downstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085C10.bB6Ng01-085C10.g
ACCDH898900DH898901
length1,1431,026
definitionDH898900|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C10, 5' end.DH898901|Mus musculus domesticus DNA, BAC clone: B6Ng01-085C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,345,545 - 55,346,699)(55,175,820 - 55,176,851)
sequence
gaattctcgagtgttcaggtgcaacatgaaggtcatcttgattgggtagt
tgcagaagcaatggaaggagatagtattttccatgagtcattcagctttt
ctcagttctcagttgtgatattaccgctgcaaggcaaatacagggagact
gtgacctggtcaccatcagatctcatgggagaactaagccttgcattcat
tggcctccacagactatcgaagtgaaagggcttagttcatccagagagag
ccacagagatgattttgacgttggaaactgacttccattgagaaaacccc
atagcattgttacaggcttacatgagtttgcacttgtagaatgttaagaa
aacaacctgcctatgttagtgtttaatcatttttaaagggaaaactaaag
tagatcactcagccaagagaaaatgatgaagagaagaacaaggccttatt
tatcagttaacaatctccgtaaggggtcaacaggatgaaaagaaataaat
gagcttgagccataatctaaagtgaaatatggcagggtgagagatgccct
gagccagcaagtaccagcacggccaacccaggtatccactctgaatgatt
actcctacaccgtcacaacagttacagacccacattttatccctgtaata
agaagcagttcttagccagatgtgtagcacaggtctttaatcccagtacc
gaggaagcagaggcagctggatctctgtgagtttgaggccagcctggttt
atatagcaggttccaggacagccagagctacatagagagaccttgtctcc
aaaaagccagaaagaagttcctggcagtaaaggtataatccatcctaggc
tactgaaagtggcagaaagtccccctcttgagatgttcactataaaatag
cacacctggcttagaggggaagaatagcccctaaccagtgaacatctccc
aatgccttcttctcttcatctcacagtgcctctccaccctgctgatgctg
gtcaccagtgacatgtaccccctcatcaactatttgggcttcatcactac
ctcttctatggggtaacgttgcagaagatagtccttcgcctggaagagcc
tgaaattctcgccccatcagtaagaggtcgccctaagtcctca
gaattcattaggtgagctctctttgagacaagagagttaatgctctctag
tacagagagtgtaggtcattctagcaaccagaaatgcagcagaggtacat
gactttaatcccagcactctggagacaagcaaacctctgtgatttcaaga
ctagagtagtctacatagtgagttccaggacagccaaagctatgtagaga
gaccctgtctcaacgaaaacataagaaaatatggcaaaggattgcaaaaa
gaatgttcaaatcagagcacccaccgtcctgagccagagctgcaccccac
caaactccttttcctcaggttactttgtaaagaaaaaaaaaaaaaacagc
ctcattggggtgttttagcataaaatgttcaaagggttttgctgtaactg
tgcattaccacaagtcagctagtgagcaccctccaaaattactcaccgtc
caaagttgcagccacccccaccgctcccagaattcaggaggctgaaatac
aaaggatcccaaactggaggacagcctgggcagctccatgtaactctgtc
tcgaaagcaaacagaaaagaaactggggcattgccaagtgagagcgagct
tacgacggaagtctagcatcctgaactcagtctcaagtatcataaataca
tacacgcaaacacacatttttgattgttttaattttttgagacaggcctc
aaacttacaaatgtagcccacggctagctttgaactcctgattcccctga
attcactatccaagtaaataatcacatttgaaaataaaaatataaaacta
gtgaacacaggggtgcataccttaatcctatcactggagacacagaagca
ggggaatctctgtgagtcaagttactgtaatgagttccaggacagccagg
gatacatagagagaccctgttgataaatagttaggactgggaaagatggc
tcacagttaggacccctgatacccttccgaggacctaagtttgggtcttc
cttctttcttccttcctccttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55345545_55346699
seq2: B6Ng01-085C10.b_44_1186 (reverse)

seq1  TGAGGACTCTAGGGCAGACCCTCTTACCTTGATGGGGCGGGGAATGTCAG  50
      |||||||| |||||| || ||||||||  ||||||||| | |||| ||||
seq2  TGAGGACT-TAGGGC-GA-CCTCTTAC--TGATGGGGC-GAGAATTTCAG  44

seq1  GCTTCTTCCA-GCGAAGGACTATCTGTCCTGCAACCGTTACCCCATAGAA  99
      || ||||||| |||||||||||||  | |||||| |||||||||||||||
seq2  GC-TCTTCCAGGCGAAGGACTATC--TTCTGCAA-CGTTACCCCATAGAA  90

seq1  GAGGTAGTTGATGAAGCCCACATAGTTGATGAGTGTGTACATGTCACTGG  149
      ||||||| |||||||||||| |||||||||||| | ||||||||||||||
seq2  GAGGTAG-TGATGAAGCCCAAATAGTTGATGAGGGGGTACATGTCACTGG  139

seq1  TGACCAGCATCAGCAGGGTGGAGAGGCACTGTTGAGATGAAGAAGAAGAA  199
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TGACCAGCATCAGCAGGGTGGAGAGGCACTG-TGAGATGAAG-AGAAGAA  187

seq1  GGCATTGGGAGATGTTCACTGGTTAGGGGCTATTCTTCCCCTCTAAGCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGGAGATGTTCACTGGTTAGGGGCTATTCTTCCCCTCTAAGCCA  237

seq1  GGTGTGCTATTTTATAGTGAACATCTCAAGAGGGGGACTTTCTGCCACCT  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGTGCTATTTTATAGTGAACATCTCAAGAGGGGGACTTTCTGCCACTT  287

seq1  TCAGTAGCCTAGGATGGATTATACCTTTACTGCCAGGAACTTCTTTCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCCTAGGATGGATTATACCTTTACTGCCAGGAACTTCTTTCTGG  337

seq1  CTTTTTGGAGACAAGGTCTCTCTATGTAGCTCTGGCTGTCCTGGAACCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGAGACAAGGTCTCTCTATGTAGCTCTGGCTGTCCTGGAACCTG  387

seq1  CTATATAAACCAGGCTGGCCTCAAACTCACAGAGATCCAGCTGCCTCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAACCAGGCTGGCCTCAAACTCACAGAGATCCAGCTGCCTCTGC  437

seq1  TTCCTCGGTACTGGGATTAAAGACCTGTGCTACACATCTGGCTAAGAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGGTACTGGGATTAAAGACCTGTGCTACACATCTGGCTAAGAACT  487

seq1  GCTTCTTATTACAGGGATAAAATGTGGGTCTGTAACTGTTGTGACGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTATTACAGGGATAAAATGTGGGTCTGTAACTGTTGTGACGGTGT  537

seq1  AGGAGTAATCATTCAGAGTGGATACCTGGGTTGGCCGTGCTGGTACTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAATCATTCAGAGTGGATACCTGGGTTGGCCGTGCTGGTACTTGC  587

seq1  TGGCTCAGGGCATCTCTCACCCTGCCATATTTCACTTTAGATTATGGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGGCATCTCTCACCCTGCCATATTTCACTTTAGATTATGGCTC  637

seq1  AAGCTCATTTATTTCTTTTCATCCTGTTGACCCCTTACGGAGATTGTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATTTATTTCTTTTCATCCTGTTGACCCCTTACGGAGATTGTTAA  687

seq1  CTGATAAATAAGGCCTTGTTCTTCTCTTCATCATTTTCTCTTGGCTGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATAAGGCCTTGTTCTTCTCTTCATCATTTTCTCTTGGCTGAGT  737

seq1  GATCTACTTTAGTTTTCCCTTTAAAAATGATTAAACACTAACATAGGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTTTAGTTTTCCCTTTAAAAATGATTAAACACTAACATAGGCAG  787

seq1  GTTGTTTTCTTAACATTCTACAAGTGCAAACTCATGTAAGCCTGTAACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTCTTAACATTCTACAAGTGCAAACTCATGTAAGCCTGTAACAA  837

seq1  TGCTATGGGGTTTTCTCAATGGAAGTCAGTTTCCAACGTCAAAATCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGGGTTTTCTCAATGGAAGTCAGTTTCCAACGTCAAAATCATCT  887

seq1  CTGTGGCTCTCTCTGGATGAACTAAGCCCTTTCACTTCGATAGTCTGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCTCTCTGGATGAACTAAGCCCTTTCACTTCGATAGTCTGTGG  937

seq1  AGGCCAATGAATGCAAGGCTTAGTTCTCCCATGAGATCTGATGGTGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATGAATGCAAGGCTTAGTTCTCCCATGAGATCTGATGGTGACCA  987

seq1  GGTCACAGTCTCCCTGTATTTGCCTTGCAGCGGTAATATCACAACTGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGTCTCCCTGTATTTGCCTTGCAGCGGTAATATCACAACTGAGA  1037

seq1  ACTGAGAAAAGCTGAATGACTCATGGAAAATACTATCTCCTTCCATTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAAGCTGAATGACTCATGGAAAATACTATCTCCTTCCATTGCT  1087

seq1  TCTGCAACTACCCAATCAAGATGACCTTCATGTTGCACCTGAACACTCGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACTACCCAATCAAGATGACCTTCATGTTGCACCTGAACACTCGA  1137

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1143

seq1: chr14_55175820_55176851
seq2: B6Ng01-085C10.g_70_1095

seq1  GAATTCATTAGGTGAGCTCTCTTTGAGACAAGAGAGTTAATGCTCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTGAGCTCTCTTTGAGACAAGAGAGTTAATGCTCTCTAG  50

seq1  TACAGAGAGTGTAGGTCATTCTAGCAACCAGAAATGCAGCAGAGGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAGTGTAGGTCATTCTAGCAACCAGAAATGCAGCAGAGGTACAT  100

seq1  GACTTTAATCCCAGCACTCTGGAGACAAGCAAACCTCTGTGATTTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAATCCCAGCACTCTGGAGACAAGCAAACCTCTGTGATTTCAAGA  150

seq1  CTAGAGTAGTCTACATAGTGAGTTCCAGGACAGCCAAAGCTATGTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAGTCTACATAGTGAGTTCCAGGACAGCCAAAGCTATGTAGAGA  200

seq1  GACCCTGTCTCAACGAAAACATAAGAAAATATGGCAAAGGATTGCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTCAACGAAAACATAAGAAAATATGGCAAAGGATTGCAAAAA  250

seq1  GAATGTTCAAATCAGAGCACCCACCGTCCTGAGCCAGAGCTGCACCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCAAATCAGAGCACCCACCGTCCTGAGCCAGAGCTGCACCCCAC  300

seq1  CAAACTCCTTTTCCTCAGGTTACTTTGTAAAGAAAAAAAAAAAAAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTTTTCCTCAGGTTACTTTGTAAAGAAAAAAAAAAAAAACAGC  350

seq1  CTCATTGGGGTGTTTTAGCATAAAATGTTCAAAGGGTTTTGCTGTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGGGTGTTTTAGCATAAAATGTTCAAAGGGTTTTGCTGTAACTG  400

seq1  TGCATTACCACAAGTCAGCTAGTGAGCACCCTCCAAAATTACTCACCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACCACAAGTCAGCTAGTGAGCACCCTCCAAAATTACTCACCGTC  450

seq1  CAAAGTTGCAGCCACCCCCACCGCTCCCAGAATTCAGGAGGCTGAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCAGCCACCCCCACCGCTCCCAGAATTCAGGAGGCTGAAATAC  500

seq1  AAAGGATCCCAAACTGGAGGACAGCCTGGGCAGCTCCATGTAACTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCCCAAACTGGAGGACAGCCTGGGCAGCTCCATGTAACTCTGTC  550

seq1  TCGAAAGCAAACAGAAAAGAAACTGGGGCATTGCCAAGTGAGAGCGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCAAACAGAAAAGAAACTGGGGCATTGCCAAGTGAGAGCGAGCT  600

seq1  TACGACGGAAGTCTAGCATCCTGAACTCAGTCTCAAGTATCATAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACGGAAGTCTAGCATCCTGAACTCAGTCTCAAGTATCATAAATACA  650

seq1  TACACGCAAACACACATTTTTGATTGTTTTAATTTTTTGAGACAGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCAAACACACATTTTTGATTGTTTTAATTTTTTGAGACAGGCCTC  700

seq1  AAACTTACAAATGTAGCCCACGGCTAGCTTTGAACTCCTGATTCCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACAAATGTAGCCCACGGCTAGCTTTGAACTCCTGATTCCCCTGA  750

seq1  ATTCACTATCCAAGTAAATAATCACATTTGAAAATAAAAATATAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATCCAAGTAAATAATCACATTTGAAAATAAAAATATAAAACTA  800

seq1  GTGAACACAGGGGTGCATACCTTAATCCTATCACTGGAGACACAGAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACAGGGGTGCATACCTTAATCCTATCACTGGAGACACAGAAGCA  850

seq1  GGGGGAATCTCTGTGAGTTCAAGTTTACTGTAATGAGTTCCAGGACAGCC  900
       |||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  -GGGGAATCTCTGTGAG-TCAAG-TTACTGTAATGAGTTCCAGGACAGCC  897

seq1  AGGGATACATAGAGAGACCCTGTTGATAAATAGTTAGGACT-GGAAAGAT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGGATACATAGAGAGACCCTGTTGATAAATAGTTAGGACTGGGAAAGAT  947

seq1  GGCTCAACAGTTAAGAACACTTGATACCCTTCAGAGGACCTAAGTTTGGT  999
      ||||| |||||| || || | ||||||||||| |||||||||||||||| 
seq2  GGCTC-ACAGTT-AGGACCCCTGATACCCTTCCGAGGACCTAAGTTTGGG  995

seq1  TCTTCCTTCTTTCTTCCTTCCTTCCTTCCTTCC  1032
      ||||||||||||||||||||| ||||| |||||
seq2  TCTTCCTTCTTTCTTCCTTCC-TCCTT-CTTCC  1026