BAC Information

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BAC

Clone NameB6Ng01-085D03
Chromosome14 (Build37)
Map Location 51,981,567 - 52,075,796
singlet/doubletdoublet
Overlap geneEG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10
Upstream geneTlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238
Downstream geneLOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085D03.bB6Ng01-085D03.g
ACCDH898934DH898935
length7841,137
definitionDH898934|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D03, 5' end.DH898935|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,075,013 - 52,075,796)(51,981,567 - 51,982,752)
sequence
gaattcttttttatttaatatgatatcccattgtgaggttgtgatccaga
ttctccgagcacctaaatcttcccatcttctgaagcttacttctagagta
gagttcatttcaccataaatgataacaacctttgctgaagatgtcataat
ttgtttatcatatattgtagcccttgtcatgtatatctgcatgttttctg
ggatcatattaacaaaagctaaacagatcccatgcctttggctttcttct
cttaaatctgagagaaactgaataccctggtcatcatctgagatgaccag
tcctatccaagtccatctaaaatgaaacatcaaggagaccatgccatggg
ataaatgtgtgtccttgggggctacctgatggacatggggcagccggtca
tggtcgcgtaggttaggattaaatggtccaaagaaaacctaaaggatgta
gaagagaggatgaaacttccagtcagaaaaatgattattaggatatttgg
aattatatacaagtaatgctactcacctttcagaactcctgttaagaata
gtatgactgtattataaatatcatgaatcattcctattagattctagact
attcctgacaagtctgaatttcctagaacacagttttgcctgtttataca
gtacgtctatgaactgatcatatatatatatatatatatatatacacaca
cacacacatatacatatatatacatatatatagtgcgtgcgtgcgtgcgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcttgaatatcaggaaaacactgtgggtgtggggttgcagtaagca
ctatgtaatgtgaataagtaaaatttatattaatacaaaaacaaaattaa
agtatttaacaaaatggggcaaaatgtattgttttactaactctagtatg
tatatattcactggcaaacacttcaacatctagagtgactagatgttgta
aagtagggtgcctttgtcattgacacatactgtgtacatagcaaagataa
ataaaatggagagcttgcatcccaaagatccattattcccctcatatcaa
agtgactgttccacctttaacagaaatctggaggcttcttttcatcctgg
tctcaggtctcatcaataatacagtctggaaccagctctggccatgtgtt
cctgtgttgctggcagacctctgcctcaggcttcagaggcactgaagggc
caaccttggccttcaggggcagccattctttcagccataccaggccctct
gccacctaaatggacacttccacacaggcctgtcatctcaaaaacaaaag
caaagataatccataatattgggatgcgtctctatagtcataatgagtgg
atacatgagaccatacaaggtaactaatgtctctgtgagtgttttccttc
tttgaaagtgagtaatgagatcatctgaggagtaaccactcctgactaac
atgaatgataggactgtacagagcatgggcttaacgttctaggtacagtg
caaattgctggaggagttaacaacaaaaaccaaaggaaacaacaggaata
ctagcaacaacatttttttaaaaaccttctgagtgctgggattaaaggca
tgtaccaactctggctagctttatttgtaataaaaaacaaacaaccctat
tacagtctcgcagttgccgtagaggagctgtgtgatactgtgtgctgctt
ctttcccagatactcagtcttcagtcttctacaagtgagatgatctagaa
cactagtgacctccctgctccatgcatgatctgcaacatctttctgatat
gaaaataataataagagcatgtatgagtagtcctttagcaggaacacagc
cttaatgaaacagaactcatgttgcaaattatgggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52075013_52075796
seq2: B6Ng01-085D03.b_45_828 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACGCACGCACGCACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGCACGCACGCACGC  50

seq1  ACTATATATATGTATATATATGTATATGTGTGTGTGTGTGTATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATATATGTATATATATGTATATGTGTGTGTGTGTGTATATATATA  100

seq1  TATATATATATATATGATCAGTTCATAGACGTACTGTATAAACAGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATGATCAGTTCATAGACGTACTGTATAAACAGGCAAA  150

seq1  ACTGTGTTCTAGGAAATTCAGACTTGTCAGGAATAGTCTAGAATCTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCTAGGAAATTCAGACTTGTCAGGAATAGTCTAGAATCTAATA  200

seq1  GGAATGATTCATGATATTTATAATACAGTCATACTATTCTTAACAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATTCATGATATTTATAATACAGTCATACTATTCTTAACAGGAGT  250

seq1  TCTGAAAGGTGAGTAGCATTACTTGTATATAATTCCAAATATCCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGTGAGTAGCATTACTTGTATATAATTCCAAATATCCTAATAA  300

seq1  TCATTTTTCTGACTGGAAGTTTCATCCTCTCTTCTACATCCTTTAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTGACTGGAAGTTTCATCCTCTCTTCTACATCCTTTAGGTTT  350

seq1  TCTTTGGACCATTTAATCCTAACCTACGCGACCATGACCGGCTGCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGACCATTTAATCCTAACCTACGCGACCATGACCGGCTGCCCCAT  400

seq1  GTCCATCAGGTAGCCCCCAAGGACACACATTTATCCCATGGCATGGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCAGGTAGCCCCCAAGGACACACATTTATCCCATGGCATGGTCTC  450

seq1  CTTGATGTTTCATTTTAGATGGACTTGGATAGGACTGGTCATCTCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTTTCATTTTAGATGGACTTGGATAGGACTGGTCATCTCAGATG  500

seq1  ATGACCAGGGTATTCAGTTTCTCTCAGATTTAAGAGAAGAAAGCCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGGGTATTCAGTTTCTCTCAGATTTAAGAGAAGAAAGCCAAAGG  550

seq1  CATGGGATCTGTTTAGCTTTTGTTAATATGATCCCAGAAAACATGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATCTGTTTAGCTTTTGTTAATATGATCCCAGAAAACATGCAGAT  600

seq1  ATACATGACAAGGGCTACAATATATGATAAACAAATTATGACATCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGACAAGGGCTACAATATATGATAAACAAATTATGACATCTTCAG  650

seq1  CAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACTCTAGAAGTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGTTATCATTTATGGTGAAATGAACTCTACTCTAGAAGTAAGC  700

seq1  TTCAGAAGATGGGAAGATTTAGGTGCTCGGAGAATCTGGATCACAACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGATGGGAAGATTTAGGTGCTCGGAGAATCTGGATCACAACCTC  750

seq1  ACAATGGGATATCATATTAAATAAAAAAGAATTC  784
      ||||||||||||||||||||||||||||||||||
seq2  ACAATGGGATATCATATTAAATAAAAAAGAATTC  784

seq1: chr14_51981567_51982752
seq2: B6Ng01-085D03.g_68_1204

seq1  GAATTCTTGAATATCAGGAAAACACTGTGGGTGTGGGGTTGCAGTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATATCAGGAAAACACTGTGGGTGTGGGGTTGCAGTAAGCA  50

seq1  CTATGTAATGTGAATAAGTAAAATTTATATTAATACAAAAACAAAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAATGTGAATAAGTAAAATTTATATTAATACAAAAACAAAATTAA  100

seq1  AGTATTTAACAAAATGGGGCAAAATGTATTGTTTTACTAACTCTAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAACAAAATGGGGCAAAATGTATTGTTTTACTAACTCTAGTATG  150

seq1  TATATATTCACTGGCAAACACTTCAACATCTAGAGTGACTAGATGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCACTGGCAAACACTTCAACATCTAGAGTGACTAGATGTTGTA  200

seq1  AAGTAGGGTGCCTTTGTCATTGACACATACTGTGTACATAGCAAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGGTGCCTTTGTCATTGACACATACTGTGTACATAGCAAAGATAA  250

seq1  ATAAAATGGAGAGCTTGCATCCCAAAGATCCATTATTCCCCTCATATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGAGAGCTTGCATCCCAAAGATCCATTATTCCCCTCATATCAA  300

seq1  AGTGACTGTTCCACCTTTAACAGAAATCTGGAGGCTTCTTTTCATCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTTCCACCTTTAACAGAAATCTGGAGGCTTCTTTTCATCCTGG  350

seq1  TCTCAGGTCTCATCAATAATACAGTCTGGAACCAGCTCTGGCCATGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTCTCATCAATAATACAGTCTGGAACCAGCTCTGGCCATGTGTT  400

seq1  CCTGTGTTGCTGGCAGACCTCTGCCTCAGGCTTCAGAGGCACTGAAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTGCTGGCAGACCTCTGCCTCAGGCTTCAGAGGCACTGAAGGGC  450

seq1  CAACCTTGGCCTTCAGGGGCAGCCATTCTTTCAGCCATACCAGGCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGGCCTTCAGGGGCAGCCATTCTTTCAGCCATACCAGGCCCTCT  500

seq1  GCCACCTAAATGGACACTTCCACACAGGCCTGTCATCTCAAAAACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTAAATGGACACTTCCACACAGGCCTGTCATCTCAAAAACAAAAG  550

seq1  CAAAGATAATCCATAATATTGGGATGCGTCTCTATAGTCATAATGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAATCCATAATATTGGGATGCGTCTCTATAGTCATAATGAGTGG  600

seq1  ATACATGAGACCATACAAGGTAACTAATGTCTCTGTGAGTGTTTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAGACCATACAAGGTAACTAATGTCTCTGTGAGTGTTTTCCTTC  650

seq1  TTTGAAAGTGAGTAATGAGATCATCTGAGGAGTAACCACTCCTGACTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTGAGTAATGAGATCATCTGAGGAGTAACCACTCCTGACTAAC  700

seq1  ATGAATGATAGGACTGTACAGAGCATGGGCTTAACGTTCTAGGTACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGATAGGACTGTACAGAGCATGGGCTTAACGTTCTAGGTACAGTG  750

seq1  CAAATTGCTGGAGGAGTTAACAACAAAAACCAAAGGAAACAACAGGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCTGGAGGAGTTAACAACAAAAACCAAAGGAAACAACAGGAATA  800

seq1  CTAGCAACAACATTTTTTTAAAAAACCTTCTGAGTGCTGGGATTAAAGGC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAGCAACAACATTTTTTT-AAAAACCTTCTGAGTGCTGGGATTAAAGGC  849

seq1  ATGTACCAACTCTGGCTAGCTTTATTTGTAATAAAAAACAAACAACCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAACTCTGGCTAGCTTTATTTGTAATAAAAAACAAACAACCCTA  899

seq1  TTACAGTTCTCGCAGTTGCCGTAGAGGGAGCTGTGTGATACTGTGTGCTG  950
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TTACAG-TCTCGCAGTTGCCGTAGA-GGAGCTGTGTGATACTGTGTGCTG  947

seq1  CTTCCTTTCCCCAGATACCTCAGGTCTTCAGTCTTCTACCAAGTGAGATG  1000
      ||||  || |||||||| |||| ||||||||||||||| |||||||||| 
seq2  CTTC--TTTCCCAGATA-CTCA-GTCTTCAGTCTTCTA-CAAGTGAGAT-  991

seq1  GATCTAAGAACAACTTAGTTGACCTCCCTGCTCCCATGGCATGATTCTGC  1050
      ||||| ||||||   ||| ||||||||||||| |||| |||||| |||||
seq2  GATCT-AGAACA--CTAG-TGACCTCCCTGCT-CCAT-GCATGA-TCTGC  1034

seq1  AACAATCCTTTCCTTGATAATGAAAAAATAAATAAATAAAGAGCATGTAT  1100
      ||||   |||||  |||| ||||||| |  |||     ||||||||||||
seq2  AACA--TCTTTC--TGAT-ATGAAAATAATAAT-----AAGAGCATGTAT  1074

seq1  GGAGTAGGTTCCCTTTAGGCCAGGAAACAACCAAGCCACTTTTAGTGAAA  1150
       ||||||    |||||||  ||||    |||  ||||    ||| |||||
seq2  -GAGTAG---TCCTTTAG--CAGG----AACACAGCC----TTAATGAAA  1110

seq1  AACCCAAGGAACATTCATGTTGGCAAAATATGGGCC  1186
       |      ||||  ||||||| ||||| ||||||||
seq2  CA------GAAC--TCATGTT-GCAAATTATGGGCC  1137