BAC Information

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BAC

Clone NameB6Ng01-085D16
Chromosome14 (Build37)
Map Location 95,002,515 - 95,141,685
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085D16.bB6Ng01-085D16.g
ACCDH898960DH898961
length1,093871
definitionDH898960|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D16, 5' end.DH898961|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,002,515 - 95,003,609)(95,140,816 - 95,141,685)
sequence
gaattctatatgtaatcctgatggaaagacagacatttgttgaagtgtat
cacatattatcttttctttttcttttttttttctttttttaattggaaat
tttctttatttacatttcacatgtttttacctttccaggtctccccttca
gaagccccctattgcctcccccttcccctgcctctatgagggtgctcccc
cacccaaccatccagtcctctcttcaggtcatagcattctcatacactgg
ggcatcaaccaccctcaggcacaaggggccactcctgccactgatgccca
acaggccatcctctgccacatatgtggcatgggtctcttcatgtgtactc
tttggttggtgcactcattcccaggagctaccggaatcctggccatttga
cattgttgctccccagagtgctgcaaacccccttagcccattgaatacca
cctctaactgctccatcaggacccagtgctccattccagtagttggctgt
aatcatctgcctctgcaatcatctgcctctgcatttatcagactctggca
gagcctttaaggagacagccatatcaggcttcggtcagcaagcacttcct
ggcatccacaatagagtccaggtttggtggctgtaaatgggatggatccc
caggtagggcagtcactggatagcctttccttcagtctgctccactttga
ttccatatttcctcctgtgagtattttgttcacccttctaagaatcactg
aagcatataccttttggtcttccttcttcttgggcttcatatggtctgtg
aatttaatcttggatattctgaacttttgggttaatatccacttatcagt
gagcacatagcatgtgtgttcttttgtgattgagttacctcactcaggat
gttactattaaattccatccatttgcctgtgaatttcatgaagtcatcat
ttttaatagctcaatagtatcctgtccctcaatagagaatggatacagaa
aatgtggtacattttccacaatagaatattatccattctatgttaagtag
atactggaattttccctagagttttagaaaggcctggccatgt
gaattcacatagaaaagaggaagaattattaattagagccctttattaag
acagactgaacaaagaaacatgaaattggtgttaagatatttgaatttaa
tttaaacaaatctgtatcaactgttctatcatgttagaggtcattagtgt
ctctagaattccttggttggttggcatttagaaatgtagagattcgggac
agaatatgggtttataaactttatccacaaggaactaatcacacaccctg
gggaaagtttcctaatctttttgagtttcaaatataatatgtaatgtttt
gtaagaattataatatttacctcatgagatttgaaataaggtccagtaag
cattgcctaataaattattatattgttttatagtgaaatatgcgagacta
tcagattaattaagttatagtagcactcttcagagacttttcccatgagc
ataagttaagtgtgtacaactgttgttaataagatataaggaatctgaga
acactcattttgtagtgatattctgagtgtcagtgcaatagagaggaaga
tgtttgtgacacttgcacatttatgagacagtatagaatttagttattat
ttctggaagggaaactaccacactgcactaatataaaaatgtttcagaat
aatcaataattctattttttcagctcctattcaatggtaaaatgatattt
atggtatgtagtcaagaatatccaggaccaaggctataaacttaggaatg
actgagaatgactaagaacatttctgttctttttagaacatgacatcttc
ttgtgtaaagcaacatattttccttccttttgttctttcttccttctttc
cttccttccttccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_95002515_95003609
seq2: B6Ng01-085D16.b_46_1138

seq1  GAATTCTATATGTAATCCTGATGGAAAGACAGACATTTGTTGAAGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATGTAATCCTGATGGAAAGACAGACATTTGTTGAAGTGTAT  50

seq1  CACATATTATCTTTTCTTTTTCTTTTTTTTTTCTTTTTTTAATTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTATCTTTTCTTTTTCTTTTTTTTTTCTTTTTTTAATTGGAAAT  100

seq1  TTTCTTTATTTACATTTCACATGTTTTTACCTTTCCAGGTCTCCCCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTACATTTCACATGTTTTTACCTTTCCAGGTCTCCCCTTCA  150

seq1  GAAGCCCCCTATTGCCTCCCCCTTCCCCTGCCTCTATGAGGGTGCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCCCTATTGCCTCCCCCTTCCCCTGCCTCTATGAGGGTGCTCCCC  200

seq1  CACCCAACCATCCAGTCCTCTCTTCAGGTCATAGCATTCTCATACACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAACCATCCAGTCCTCTCTTCAGGTCATAGCATTCTCATACACTGG  250

seq1  GGCATCAACCACCCTCAGGCACAAGGGGCCACTCCTGCCACTGATGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAACCACCCTCAGGCACAAGGGGCCACTCCTGCCACTGATGCCCA  300

seq1  ACAGGCCATCCTCTGCCACATATGTGGCATGGGTCTCTTCATGTGTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCATCCTCTGCCACATATGTGGCATGGGTCTCTTCATGTGTACTC  350

seq1  TTTGGTTGGTGCACTCATTCCCAGGAGCTACCGGAATCCTGGCCATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGGTGCACTCATTCCCAGGAGCTACCGGAATCCTGGCCATTTGA  400

seq1  CATTGTTGCTCCCCAGAGTGCTGCAAACCCCCTTAGCCCATTGAATACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGCTCCCCAGAGTGCTGCAAACCCCCTTAGCCCATTGAATACCA  450

seq1  CCTCTAACTGCTCCATCAGGACCCAGTGCTCCATTCCAGTAGTTGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACTGCTCCATCAGGACCCAGTGCTCCATTCCAGTAGTTGGCTGT  500

seq1  AATCATCTGCCTCTGCAATCATCTGCCTCTGCATTTATCAGACTCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGCCTCTGCAATCATCTGCCTCTGCATTTATCAGACTCTGGCA  550

seq1  GAGCCTTTAAGGAGACAGCCATATCAGGCTTCGGTCAGCAAGCACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTAAGGAGACAGCCATATCAGGCTTCGGTCAGCAAGCACTTCCT  600

seq1  GGCATCCACAATAGAGTCCAGGTTTGGTGGCTGTAAATGGGATGGATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCACAATAGAGTCCAGGTTTGGTGGCTGTAAATGGGATGGATCCC  650

seq1  CAGGTAGGGCAGTCACTGGATAGCCTTTCCTTCAGTCTGCTCCACTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGGCAGTCACTGGATAGCCTTTCCTTCAGTCTGCTCCACTTTGA  700

seq1  TTCCATATTTCCTCCTGTGAGTATTTTGTTCACCCTTCTAAGAATCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTTCCTCCTGTGAGTATTTTGTTCACCCTTCTAAGAATCACTG  750

seq1  AAGCATATACCTTTTGGTCTTCCTTCTTCTTGGGCTTCATATGGTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATACCTTTTGGTCTTCCTTCTTCTTGGGCTTCATATGGTCTGTG  800

seq1  AATTTAATCTTGGATATTCTGAACTTTTGGGTTAATATCCACTTATCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCTTGGATATTCTGAACTTTTGGGTTAATATCCACTTATCAGT  850

seq1  GAGCACATAGCATGTGTGTTCTTTTGTGATTGAGTTACCTCACTCAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATAGCATGTGTGTTCTTTTGTGATTGAGTTACCTCACTCAGGAT  900

seq1  GTTACTATTAAATTCCATCCATTTGCCTGTGAATTTCATGAAGTCATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTAAATTCCATCCATTTGCCTGTGAATTTCATGAAGTCATCAT  950

seq1  TTTTAATAGCTCAATAGTATCCTGTCCCTCAATAGAGAAATGGATACAGA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTAATAGCTCAATAGTATCCTGTCCCTCAATAGAG-AATGGATACAGA  999

seq1  AAATGTGGTACA-TTTCCACAATAGAATATTATCCATTCTATGTTAAGTA  1049
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTACATTTTCCACAATAGAATATTATCCATTCTATGTTAAGTA  1049

seq1  AGGATACTGGAATTTTCCCTAGAGTTTTAGAAAGGCCTGGCAATGT  1095
        ||||||||||||||||||||||||||||||||||||||| ||||
seq2  --GATACTGGAATTTTCCCTAGAGTTTTAGAAAGGCCTGGCCATGT  1093

seq1: chr14_95140816_95141685
seq2: B6Ng01-085D16.g_68_938 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAAAGAACAAAAGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAAAGAACAAAAGGAAGG  50

seq1  AAAATATGTTGCTTTACACAAGAAGATGTCATGTTCTAAAAAGAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTTGCTTTACACAAGAAGATGTCATGTTCTAAAAAGAACAGAA  100

seq1  ATGTTCTTAGTCATTCTCAGTCATTCCTAAGTTTATAGCCTTGGTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAGTCATTCTCAGTCATTCCTAAGTTTATAGCCTTGGTCCTGG  150

seq1  ATATTCTTGACTACATACCATAAATATCATTTTACCATTGAATAGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGACTACATACCATAAATATCATTTTACCATTGAATAGGAGCT  200

seq1  G-AAAAATAGAATTATTGATTATTCTGAAACATTTTTATATTAGTGCAGT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAGAATTATTGATTATTCTGAAACATTTTTATATTAGTGCAGT  250

seq1  GTGGTAGTTTCCCTTCCAGAAATAATAACTAAATTCTATACTGTCTCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTTTCCCTTCCAGAAATAATAACTAAATTCTATACTGTCTCATA  300

seq1  AATGTGCAAGTGTCACAAACATCTTCCTCTCTATTGCACTGACACTCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAAGTGTCACAAACATCTTCCTCTCTATTGCACTGACACTCAGA  350

seq1  ATATCACTACAAAATGAGTGTTCTCAGATTCCTTATATCTTATTAACAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTACAAAATGAGTGTTCTCAGATTCCTTATATCTTATTAACAAC  400

seq1  AGTTGTACACACTTAACTTATGCTCATGGGAAAAGTCTCTGAAGAGTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACACACTTAACTTATGCTCATGGGAAAAGTCTCTGAAGAGTGCT  450

seq1  ACTATAACTTAATTAATCTGATAGTCTCGCATATTTCACTATAAAACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAACTTAATTAATCTGATAGTCTCGCATATTTCACTATAAAACAAT  500

seq1  ATAATAATTTATTAGGCAATGCTTACTGGACCTTATTTCAAATCTCATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTTATTAGGCAATGCTTACTGGACCTTATTTCAAATCTCATGA  550

seq1  GGTAAATATTATAATTCTTACAAAACATTACATATTATATTTGAAACTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATATTATAATTCTTACAAAACATTACATATTATATTTGAAACTCA  600

seq1  AAAAGATTAGGAAACTTTCCCCAGGGTGTGTGATTAGTTCCTTGTGGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTAGGAAACTTTCCCCAGGGTGTGTGATTAGTTCCTTGTGGATA  650

seq1  AAGTTTATAAACCCATATTCTGTCCCGAATCTCTACATTTCTAAATGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAAACCCATATTCTGTCCCGAATCTCTACATTTCTAAATGCCA  700

seq1  ACCAACCAAGGAATTCTAGAGACACTAATGACCTCTAACATGATAGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAGGAATTCTAGAGACACTAATGACCTCTAACATGATAGAACA  750

seq1  GTTGATACAGATTTGTTTAAATTAAATTCAAATATCTTAACACCAATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATACAGATTTGTTTAAATTAAATTCAAATATCTTAACACCAATTTC  800

seq1  ATGTTTCTTTGTTCAGTCTGTCTTAATAAAGGGCTCTAATTAATAATTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTGTTCAGTCTGTCTTAATAAAGGGCTCTAATTAATAATTCT  850

seq1  TCCTCTTTTCTATGTGAATTC  870
      |||||||||||||||||||||
seq2  TCCTCTTTTCTATGTGAATTC  871